RNA–Protein interactions for RNA: ENST00000592690.1

LIG3-215, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 722 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-215ENST00000592690 RNF24Q9Y225 148 aa11.39□□□□□ -0.59
LIG3-215ENST00000592690 TRAV5A0A0B4J249 113 aa11.38□□□□□ -0.59
LIG3-215ENST00000592690 IGHV4-28A0A0C4DH34 117 aa11.38□□□□□ -0.59
LIG3-215ENST00000592690 MPDU1O75352 247 aa11.38□□□□□ -0.59
LIG3-215ENST00000592690 ZNF705DP0CH99 300 aaPredicted RBP11.38□□□□□ -0.59
LIG3-215ENST00000592690 ZNF705BP0CI00 300 aaPredicted RBP11.38□□□□□ -0.59
LIG3-215ENST00000592690 PET100P0DJ07 73 aa11.38□□□□□ -0.59
LIG3-215ENST00000592690 RBMY1A1P0DJD3 496 aaKnown RBP11.38□□□□□ -0.59
LIG3-215ENST00000592690 RBMY1CP0DJD4 496 aa11.38□□□□□ -0.59
LIG3-215ENST00000592690 PRB4P10163 310 aaPredicted RBP11.38□□□□□ -0.59
LIG3-215ENST00000592690 RBMY1FQ15415 496 aaKnown RBP11.38□□□□□ -0.59
LIG3-215ENST00000592690 BPIFA4PQ86YQ2 179 aa11.38□□□□□ -0.59
LIG3-215ENST00000592690 OR1L4Q8NGR5 311 aa11.38□□□□□ -0.59
LIG3-215ENST00000592690 PFDN5Q99471 154 aa11.38□□□□□ -0.59
LIG3-215ENST00000592690 LYSTQ99698 3801 aa11.37□□□□□ -0.59
LIG3-215ENST00000592690 A8MTW9 85 aa11.37□□□□□ -0.59
LIG3-215ENST00000592690 H3BTX0 84 aa11.37□□□□□ -0.59
LIG3-215ENST00000592690 IGLC2P0DOY2 106 aa11.37□□□□□ -0.59
LIG3-215ENST00000592690 MIFP14174 115 aa11.37□□□□□ -0.59
LIG3-215ENST00000592690 PSG9Q00887 426 aa11.37□□□□□ -0.59
LIG3-215ENST00000592690 FCN2Q15485 313 aa11.37□□□□□ -0.59
LIG3-215ENST00000592690 GCSAMLQ5JQS6 135 aa11.37□□□□□ -0.59
LIG3-215ENST00000592690 ZNF738Q8NE65 137 aa11.37□□□□□ -0.59
LIG3-215ENST00000592690 OR11H7Q8NGC8 314 aa11.37□□□□□ -0.59
LIG3-215ENST00000592690 HSPB11Q9Y547 144 aa11.37□□□□□ -0.59
LIG3-215ENST00000592690 LCE6AA0A183 80 aa11.36□□□□□ -0.59
LIG3-215ENST00000592690 SLC17A3O00476 420 aa11.36□□□□□ -0.59
LIG3-215ENST00000592690 CNN1P51911 297 aaKnown RBP11.36□□□□□ -0.59
LIG3-215ENST00000592690 NANOS2P60321 138 aaKnown RBP11.36□□□□□ -0.59
LIG3-215ENST00000592690 LCN15Q6UWW0 184 aa11.36□□□□□ -0.59
LIG3-215ENST00000592690 AMTNQ6UX39 209 aa11.36□□□□□ -0.59
LIG3-215ENST00000592690 LRRC20Q8TCA0 184 aa11.36□□□□□ -0.59
LIG3-215ENST00000592690 WDR61Q9GZS3 305 aaKnown RBP11.36□□□□□ -0.59
LIG3-215ENST00000592690 MFFQ9GZY8 342 aa11.36□□□□□ -0.59
LIG3-215ENST00000592690 H3BQ15 152 aa11.35□□□□□ -0.59
LIG3-215ENST00000592690 CXCL2P19875 107 aa11.35□□□□□ -0.59
LIG3-215ENST00000592690 RPL12P30050 165 aaKnown RBP11.35□□□□□ -0.59
LIG3-215ENST00000592690 PSG3Q16557 428 aa11.35□□□□□ -0.59
LIG3-215ENST00000592690 ZNF705AQ6ZN79 300 aaPredicted RBP11.35□□□□□ -0.59
LIG3-215ENST00000592690 C11orf45Q8TAV5 145 aa11.35□□□□□ -0.59
LIG3-215ENST00000592690 ATP5SQ99766 215 aa11.35□□□□□ -0.59
LIG3-215ENST00000592690 SLC50A1Q9BRV3 221 aa11.35□□□□□ -0.59
LIG3-215ENST00000592690 SMIM3Q9BZL3 60 aa11.35□□□□□ -0.59
LIG3-215ENST00000592690 MED28Q9H204 178 aa11.35□□□□□ -0.59
LIG3-215ENST00000592690 ZNF331Q9NQX6 463 aaPredicted RBP11.35□□□□□ -0.59
LIG3-215ENST00000592690 NUPR2A6NF83 97 aa11.34□□□□□ -0.59
LIG3-215ENST00000592690 DUSP14O95147 198 aaKnown RBP11.34□□□□□ -0.59
LIG3-215ENST00000592690 HRH4Q9H3N8 390 aa11.34□□□□□ -0.59
LIG3-215ENST00000592690 IGHV3OR16-12A0A075B7B8 117 aa11.33□□□□□ -0.6
LIG3-215ENST00000592690 ZNF705FA8MVS1 300 aaPredicted RBP11.33□□□□□ -0.6
LIG3-215ENST00000592690 HIST1H1AQ02539 215 aaPredicted RBP11.33□□□□□ -0.6
LIG3-215ENST00000592690 SPINK13Q1W4C9 94 aa11.33□□□□□ -0.6
LIG3-215ENST00000592690 CEMP1Q6PRD7 247 aaPredicted RBP11.33□□□□□ -0.6
LIG3-215ENST00000592690 OR8A1Q8NGG7 326 aa11.33□□□□□ -0.6
LIG3-215ENST00000592690 PHLDA1Q8WV24 401 aaPredicted RBP11.33□□□□□ -0.6
LIG3-215ENST00000592690 RPUSD4Q96CM3 377 aaKnown RBP11.33□□□□□ -0.6
LIG3-215ENST00000592690 SAT2Q96F10 170 aaPredicted RBP11.33□□□□□ -0.6
LIG3-215ENST00000592690 ZNF586Q9NXT0 402 aa11.33□□□□□ -0.6
LIG3-215ENST00000592690 ALMS1Q8TCU4 4167 aa11.33□□□□□ -0.6
LIG3-215ENST00000592690 DNAH1Q9P2D7 4330 aa11.32□□□□□ -0.6
LIG3-215ENST00000592690 M0R2Z0 102 aa11.32□□□□□ -0.6
LIG3-215ENST00000592690 RGS21Q2M5E4 152 aa11.32□□□□□ -0.6
LIG3-215ENST00000592690 MIR17HGQ75NE6 70 aa11.32□□□□□ -0.6
LIG3-215ENST00000592690 C1orf158Q8N1D5 194 aa11.32□□□□□ -0.6
LIG3-215ENST00000592690 WFDC1Q9HC57 220 aa11.32□□□□□ -0.6
LIG3-215ENST00000592690 CELA1Q9UNI1 258 aa11.32□□□□□ -0.6
LIG3-215ENST00000592690 PYYP10082 97 aa11.31□□□□□ -0.6
LIG3-215ENST00000592690 NEU1Q99519 415 aa11.31□□□□□ -0.6
LIG3-215ENST00000592690 SLC25A2Q9BXI2 301 aa11.31□□□□□ -0.6
LIG3-215ENST00000592690 KCNIP2Q9NS61 270 aa11.31□□□□□ -0.6
LIG3-215ENST00000592690 TMEM14CQ9P0S9 112 aa11.31□□□□□ -0.6
LIG3-215ENST00000592690 PLECQ15149 4684 aaKnown RBP11.3□□□□□ -0.6
LIG3-215ENST00000592690 PRAC2D3DTV9 90 aa11.3□□□□□ -0.6
LIG3-215ENST00000592690 C17orf112F2Z3M2 114 aa11.3□□□□□ -0.6
LIG3-215ENST00000592690 BOLA2-SMG1P6H3BVE0 249 aa11.3□□□□□ -0.6
LIG3-215ENST00000592690 CRXO43186 299 aaPredicted RBP11.3□□□□□ -0.6
LIG3-215ENST00000592690 GUK1Q16774 197 aa11.3□□□□□ -0.6
LIG3-215ENST00000592690 Q5BKY6 102 aa11.3□□□□□ -0.6
LIG3-215ENST00000592690 BAP18Q8IXM2 172 aa11.3□□□□□ -0.6
LIG3-215ENST00000592690 FAM167A-AS1Q96KT0 104 aa11.3□□□□□ -0.6
LIG3-215ENST00000592690 IGF2BP2-AS1Q96M15 143 aa11.3□□□□□ -0.6
LIG3-215ENST00000592690 GOLT1BQ9Y3E0 138 aa11.3□□□□□ -0.6
LIG3-215ENST00000592690 RFNGQ9Y644 331 aa11.3□□□□□ -0.6
LIG3-215ENST00000592690 TRBV19A0A075B6N1 114 aa11.29□□□□□ -0.6
LIG3-215ENST00000592690 TRAV12-2A0A075B6T6 113 aa11.29□□□□□ -0.6
LIG3-215ENST00000592690 JTBO76095 146 aa11.29□□□□□ -0.6
LIG3-215ENST00000592690 NDUFB4O95168 129 aa11.29□□□□□ -0.6
LIG3-215ENST00000592690 IFNA5P01569 189 aa11.29□□□□□ -0.6
LIG3-215ENST00000592690 RHOBP62745 196 aa11.29□□□□□ -0.6
LIG3-215ENST00000592690 OXA1LQ15070 435 aa11.29□□□□□ -0.6
LIG3-215ENST00000592690 SCGB1C1Q8TD33 95 aa11.29□□□□□ -0.6
LIG3-215ENST00000592690 MRPL32Q9BYC8 188 aaKnown RBP11.29□□□□□ -0.6
LIG3-215ENST00000592690 HYDINQ4G0P3 5121 aa11.29□□□□□ -0.6
LIG3-215ENST00000592690 SMIM9A6NGZ8 99 aa11.28□□□□□ -0.6
LIG3-215ENST00000592690 ZNF253O75346 499 aa11.28□□□□□ -0.6
LIG3-215ENST00000592690 INSP01308 110 aa11.28□□□□□ -0.6
LIG3-215ENST00000592690 AMBPP02760 352 aa11.28□□□□□ -0.6
LIG3-215ENST00000592690 GIPP09681 153 aaPredicted RBP11.28□□□□□ -0.6
LIG3-215ENST00000592690 HIST1H1EP10412 219 aaKnown RBP11.28□□□□□ -0.6
LIG3-215ENST00000592690 FFAR4Q5NUL3 377 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms