RNA–Protein interactions for RNA: ENST00000582653.1

SHMT1-209, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 3

Gene SHMT1, Length 879 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-209ENST00000582653 CXCL3P19876 107 aa14.55□□□□□ -0.08
SHMT1-209ENST00000582653 VAMP2P63027 116 aa14.55□□□□□ -0.08
SHMT1-209ENST00000582653 ZNF846Q147U1 533 aa14.55□□□□□ -0.08
SHMT1-209ENST00000582653 NUDT15Q9NV35 164 aa14.55□□□□□ -0.08
SHMT1-209ENST00000582653 TRAV12-2A0A075B6T6 113 aa14.54□□□□□ -0.08
SHMT1-209ENST00000582653 ZNF705GA8MUZ8 300 aaPredicted RBP14.54□□□□□ -0.08
SHMT1-209ENST00000582653 MRPS12O15235 138 aaKnown RBP14.54□□□□□ -0.08
SHMT1-209ENST00000582653 LINC00305Q7Z4B0 112 aa14.54□□□□□ -0.08
SHMT1-209ENST00000582653 BAP18Q8IXM2 172 aa14.54□□□□□ -0.08
SHMT1-209ENST00000582653 LRRC20Q8TCA0 184 aa14.54□□□□□ -0.08
SHMT1-209ENST00000582653 ZNF431Q8TF32 576 aaPredicted RBP14.54□□□□□ -0.08
SHMT1-209ENST00000582653 MGST2Q99735 147 aa14.54□□□□□ -0.08
SHMT1-209ENST00000582653 C5orf51A6NDU8 294 aa14.53□□□□□ -0.08
SHMT1-209ENST00000582653 BCAP31P51572 246 aa14.53□□□□□ -0.08
SHMT1-209ENST00000582653 HIST1H1AQ02539 215 aaPredicted RBP14.53□□□□□ -0.08
SHMT1-209ENST00000582653 PSG3Q16557 428 aa14.53□□□□□ -0.08
SHMT1-209ENST00000582653 ZNF546Q86UE3 836 aa14.53□□□□□ -0.08
SHMT1-209ENST00000582653 GGACTQ9BVM4 153 aa14.53□□□□□ -0.08
SHMT1-209ENST00000582653 FAM24AA6NFZ4 105 aa14.52□□□□□ -0.09
SHMT1-209ENST00000582653 CST7O76096 145 aa14.52□□□□□ -0.09
SHMT1-209ENST00000582653 INSP01308 110 aa14.52□□□□□ -0.09
SHMT1-209ENST00000582653 CAV2P51636 162 aa14.52□□□□□ -0.09
SHMT1-209ENST00000582653 RHOBP62745 196 aa14.52□□□□□ -0.09
SHMT1-209ENST00000582653 LGALS9BQ3B8N2 356 aa14.52□□□□□ -0.09
SHMT1-209ENST00000582653 MORN5Q5VZ52 161 aa14.52□□□□□ -0.09
SHMT1-209ENST00000582653 S100A7AQ86SG5 101 aa14.52□□□□□ -0.09
SHMT1-209ENST00000582653 C12orf45Q8N5I9 185 aaPredicted RBP14.52□□□□□ -0.09
SHMT1-209ENST00000582653 OR8A1Q8NGG7 326 aa14.52□□□□□ -0.09
SHMT1-209ENST00000582653 TMEM37Q8WXS4 190 aa14.52□□□□□ -0.09
SHMT1-209ENST00000582653 C11orf1Q9H5F2 150 aa14.52□□□□□ -0.09
SHMT1-209ENST00000582653 H3BTX0 84 aa14.51□□□□□ -0.09
SHMT1-209ENST00000582653 BOLA2-SMG1P6H3BVE0 249 aa14.51□□□□□ -0.09
SHMT1-209ENST00000582653 COX7A2P2O60397 106 aa14.51□□□□□ -0.09
SHMT1-209ENST00000582653 H2AFB2P0C5Z0 115 aa14.51□□□□□ -0.09
SHMT1-209ENST00000582653 AZU1P20160 251 aa14.51□□□□□ -0.09
SHMT1-209ENST00000582653 PXDC1Q5TGL8 231 aa14.51□□□□□ -0.09
SHMT1-209ENST00000582653 C2orf50Q96LR7 162 aa14.51□□□□□ -0.09
SHMT1-209ENST00000582653 A0A1B0GVY2 172 aa14.5□□□□□ -0.09
SHMT1-209ENST00000582653 M0R2N4 97 aa14.5□□□□□ -0.09
SHMT1-209ENST00000582653 DAD1P61803 113 aa14.5□□□□□ -0.09
SHMT1-209ENST00000582653 RPUSD4Q96CM3 377 aaKnown RBP14.5□□□□□ -0.09
SHMT1-209ENST00000582653 CAMLGP49069 296 aa14.49□□□□□ -0.09
SHMT1-209ENST00000582653 RNF212Q495C1 297 aa14.49□□□□□ -0.09
SHMT1-209ENST00000582653 NRARPQ7Z6K4 114 aa14.49□□□□□ -0.09
SHMT1-209ENST00000582653 CCDC32Q9BV29 185 aa14.49□□□□□ -0.09
SHMT1-209ENST00000582653 ZNF331Q9NQX6 463 aaPredicted RBP14.49□□□□□ -0.09
SHMT1-209ENST00000582653 PPP1R14DQ9NXH3 145 aa14.49□□□□□ -0.09
SHMT1-209ENST00000582653 RNF24Q9Y225 148 aa14.49□□□□□ -0.09
SHMT1-209ENST00000582653 PRSS29PA6NIE9 313 aa14.48□□□□□ -0.09
SHMT1-209ENST00000582653 RTL8CO15255 209 aa14.48□□□□□ -0.09
SHMT1-209ENST00000582653 B2MP61769 119 aa14.48□□□□□ -0.09
SHMT1-209ENST00000582653 OPCMLQ14982 345 aa14.48□□□□□ -0.09
SHMT1-209ENST00000582653 FCN2Q15485 313 aa14.48□□□□□ -0.09
SHMT1-209ENST00000582653 C10orf113Q5VZT2 155 aa14.48□□□□□ -0.09
SHMT1-209ENST00000582653 MIC13Q5XKP0 118 aa14.48□□□□□ -0.09
SHMT1-209ENST00000582653 BPIFA4PQ86YQ2 179 aa14.48□□□□□ -0.09
SHMT1-209ENST00000582653 LINC01587Q99440 93 aa14.48□□□□□ -0.09
SHMT1-209ENST00000582653 TRAV5A0A0B4J249 113 aa14.47□□□□□ -0.09
SHMT1-209ENST00000582653 FAM240BA0A1B0GVZ2 78 aa14.47□□□□□ -0.09
SHMT1-209ENST00000582653 SLC17A3O00476 420 aa14.47□□□□□ -0.09
SHMT1-209ENST00000582653 HTN1P15515 57 aa14.47□□□□□ -0.09
SHMT1-209ENST00000582653 S100A10P60903 97 aa14.47□□□□□ -0.09
SHMT1-209ENST00000582653 IL15RAQ13261 267 aa14.47□□□□□ -0.09
SHMT1-209ENST00000582653 TMEM88Q6PEY1 159 aa14.47□□□□□ -0.09
SHMT1-209ENST00000582653 LCN15Q6UWW0 184 aa14.47□□□□□ -0.09
SHMT1-209ENST00000582653 UBE2DNLQ8IWF7 75 aa14.47□□□□□ -0.09
SHMT1-209ENST00000582653 IGSF23A1L1A6 192 aa14.46□□□□□ -0.09
SHMT1-209ENST00000582653 PLAC8L1A1L4L8 177 aa14.46□□□□□ -0.09
SHMT1-209ENST00000582653 PRAC2D3DTV9 90 aa14.46□□□□□ -0.09
SHMT1-209ENST00000582653 H3BQ15 152 aa14.46□□□□□ -0.09
SHMT1-209ENST00000582653 CXCL2P19875 107 aa14.46□□□□□ -0.09
SHMT1-209ENST00000582653 PVALBP20472 110 aaPredicted RBP14.46□□□□□ -0.09
SHMT1-209ENST00000582653 RAB32Q13637 225 aa14.46□□□□□ -0.09
SHMT1-209ENST00000582653 Q6ZRG5 221 aa14.46□□□□□ -0.09
SHMT1-209ENST00000582653 PARD6GQ9BYG4 376 aaPredicted RBP14.46□□□□□ -0.09
SHMT1-209ENST00000582653 DNAJC4Q9NNZ3 241 aa14.46□□□□□ -0.09
SHMT1-209ENST00000582653 UQCC1Q9NVA1 299 aa14.46□□□□□ -0.09
SHMT1-209ENST00000582653 WDR83OSQ9Y284 106 aa14.46□□□□□ -0.09
SHMT1-209ENST00000582653 PKD1P98161 4303 aa14.46□□□□□ -0.1
SHMT1-209ENST00000582653 IGLC2P0DOY2 106 aa14.45□□□□□ -0.1
SHMT1-209ENST00000582653 DEFB130BP0DP73 79 aa14.45□□□□□ -0.1
SHMT1-209ENST00000582653 DEFB130AP0DP74 79 aa14.45□□□□□ -0.1
SHMT1-209ENST00000582653 TSPOP30536 169 aa14.45□□□□□ -0.1
SHMT1-209ENST00000582653 RAB31Q13636 194 aa14.45□□□□□ -0.1
SHMT1-209ENST00000582653 KIR3DS1Q14943 382 aa14.45□□□□□ -0.1
SHMT1-209ENST00000582653 Q6ZR54 194 aa14.45□□□□□ -0.1
SHMT1-209ENST00000582653 TMEM252Q8N6L7 170 aa14.45□□□□□ -0.1
SHMT1-209ENST00000582653 SLC50A1Q9BRV3 221 aa14.45□□□□□ -0.1
SHMT1-209ENST00000582653 UBE2L5PA0A1B0GUS4 154 aa14.44□□□□□ -0.1
SHMT1-209ENST00000582653 LYRM9A8MSI8 78 aa14.44□□□□□ -0.1
SHMT1-209ENST00000582653 SULT1A1P50225 295 aa14.44□□□□□ -0.1
SHMT1-209ENST00000582653 VWC2Q2TAL6 325 aa14.44□□□□□ -0.1
SHMT1-209ENST00000582653 SAT2Q96F10 170 aaPredicted RBP14.44□□□□□ -0.1
SHMT1-209ENST00000582653 LYRM2Q9NU23 88 aaPredicted RBP14.44□□□□□ -0.1
SHMT1-209ENST00000582653 KIAA1109Q2LD37 5005 aa14.43□□□□□ -0.1
SHMT1-209ENST00000582653 IGLV2-18A0A075B6J9 118 aa14.43□□□□□ -0.1
SHMT1-209ENST00000582653 CDKN1BP46527 198 aa14.43□□□□□ -0.1
SHMT1-209ENST00000582653 BAXQ07812 192 aa14.43□□□□□ -0.1
SHMT1-209ENST00000582653 MZT2BQ6NZ67 158 aa14.43□□□□□ -0.1
SHMT1-209ENST00000582653 TMEM256Q8N2U0 113 aa14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms