RNA–Protein interactions for RNA: ENST00000579558.5

SHMT1-206, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 2

Gene SHMT1, Length 1,077 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-206ENST00000579558 IGHV3OR16-12A0A075B7B8 117 aa17.25■□□□□ 0.35
SHMT1-206ENST00000579558 A8MTW9 85 aa17.25■□□□□ 0.35
SHMT1-206ENST00000579558 DUSP14O95147 198 aaKnown RBP17.25■□□□□ 0.35
SHMT1-206ENST00000579558 H2BFSP57053 126 aa17.25■□□□□ 0.35
SHMT1-206ENST00000579558 OPCMLQ14982 345 aa17.25■□□□□ 0.35
SHMT1-206ENST00000579558 MORN5Q5VZ52 161 aa17.25■□□□□ 0.35
SHMT1-206ENST00000579558 ZNF705AQ6ZN79 300 aaPredicted RBP17.25■□□□□ 0.35
SHMT1-206ENST00000579558 BPIFA4PQ86YQ2 179 aa17.25■□□□□ 0.35
SHMT1-206ENST00000579558 OR1L4Q8NGR5 311 aa17.25■□□□□ 0.35
SHMT1-206ENST00000579558 ALMS1Q8TCU4 4167 aa17.24■□□□□ 0.35
SHMT1-206ENST00000579558 CXCL3P19876 107 aa17.24■□□□□ 0.35
SHMT1-206ENST00000579558 HLA-DMBP28068 263 aa17.24■□□□□ 0.35
SHMT1-206ENST00000579558 RPL29P47914 159 aaKnown RBP17.24■□□□□ 0.35
SHMT1-206ENST00000579558 CNN1P51911 297 aaKnown RBP17.24■□□□□ 0.35
SHMT1-206ENST00000579558 B2MP61769 119 aa17.24■□□□□ 0.35
SHMT1-206ENST00000579558 NHLH2Q02577 135 aa17.24■□□□□ 0.35
SHMT1-206ENST00000579558 LINC00476Q8WZB0 136 aa17.24■□□□□ 0.35
SHMT1-206ENST00000579558 SLC39A9Q9NUM3 307 aa17.24■□□□□ 0.35
SHMT1-206ENST00000579558 ZNF705FA8MVS1 300 aaPredicted RBP17.23■□□□□ 0.35
SHMT1-206ENST00000579558 H0YIZ8 118 aa17.23■□□□□ 0.35
SHMT1-206ENST00000579558 ZNF705DP0CH99 300 aaPredicted RBP17.23■□□□□ 0.35
SHMT1-206ENST00000579558 ZNF705BP0CI00 300 aaPredicted RBP17.23■□□□□ 0.35
SHMT1-206ENST00000579558 CXCL2P19875 107 aa17.23■□□□□ 0.35
SHMT1-206ENST00000579558 LCN15Q6UWW0 184 aa17.23■□□□□ 0.35
SHMT1-206ENST00000579558 AMTNQ6UX39 209 aa17.23■□□□□ 0.35
SHMT1-206ENST00000579558 CHAC2Q8WUX2 184 aa17.23■□□□□ 0.35
SHMT1-206ENST00000579558 PFDN5Q99471 154 aa17.23■□□□□ 0.35
SHMT1-206ENST00000579558 NEU1Q99519 415 aa17.23■□□□□ 0.35
SHMT1-206ENST00000579558 GOLT1BQ9Y3E0 138 aa17.23■□□□□ 0.35
SHMT1-206ENST00000579558 MPDU1O75352 247 aa17.22■□□□□ 0.35
SHMT1-206ENST00000579558 SNRPCP09234 159 aaKnown RBP17.22■□□□□ 0.35
SHMT1-206ENST00000579558 PSG3Q16557 428 aa17.22■□□□□ 0.35
SHMT1-206ENST00000579558 OR5C1Q8NGR4 320 aa17.22■□□□□ 0.35
SHMT1-206ENST00000579558 PPP1R1CQ8WVI7 109 aa17.22■□□□□ 0.35
SHMT1-206ENST00000579558 PXMP4Q9Y6I8 212 aa17.22■□□□□ 0.35
SHMT1-206ENST00000579558 SMIM9A6NGZ8 99 aa17.21■□□□□ 0.35
SHMT1-206ENST00000579558 LY6G6CO95867 125 aa17.21■□□□□ 0.35
SHMT1-206ENST00000579558 OR11H7Q8NGC8 314 aa17.21■□□□□ 0.35
SHMT1-206ENST00000579558 SLC50A1Q9BRV3 221 aa17.21■□□□□ 0.35
SHMT1-206ENST00000579558 CELA1Q9UNI1 258 aa17.21■□□□□ 0.35
SHMT1-206ENST00000579558 TRAV5A0A0B4J249 113 aa17.2■□□□□ 0.34
SHMT1-206ENST00000579558 HIST1H1AQ02539 215 aaPredicted RBP17.2■□□□□ 0.34
SHMT1-206ENST00000579558 OR8A1Q8NGG7 326 aa17.2■□□□□ 0.34
SHMT1-206ENST00000579558 THAP6Q8TBB0 222 aa17.2■□□□□ 0.34
SHMT1-206ENST00000579558 NPCDR1Q9BY65 106 aa17.2■□□□□ 0.34
SHMT1-206ENST00000579558 ZNF331Q9NQX6 463 aaPredicted RBP17.2■□□□□ 0.34
SHMT1-206ENST00000579558 C11orf94C9JXX5 98 aa17.19■□□□□ 0.34
SHMT1-206ENST00000579558 H3BTX0 84 aa17.19■□□□□ 0.34
SHMT1-206ENST00000579558 AMBPP02760 352 aa17.19■□□□□ 0.34
SHMT1-206ENST00000579558 IGLC2P0DOY2 106 aa17.19■□□□□ 0.34
SHMT1-206ENST00000579558 CLINT1Q14677 625 aa17.19■□□□□ 0.34
SHMT1-206ENST00000579558 SPINK13Q1W4C9 94 aa17.19■□□□□ 0.34
SHMT1-206ENST00000579558 Q6ZTC4 211 aa17.19■□□□□ 0.34
SHMT1-206ENST00000579558 C1orf158Q8N1D5 194 aa17.19■□□□□ 0.34
SHMT1-206ENST00000579558 C2CD4CQ8TF44 421 aa17.19■□□□□ 0.34
SHMT1-206ENST00000579558 IGF2BP2-AS1Q96M15 143 aa17.19■□□□□ 0.34
SHMT1-206ENST00000579558 RFNGQ9Y644 331 aa17.19■□□□□ 0.34
SHMT1-206ENST00000579558 HYDINQ4G0P3 5121 aa17.18■□□□□ 0.34
SHMT1-206ENST00000579558 M0R2Z0 102 aa17.18■□□□□ 0.34
SHMT1-206ENST00000579558 PET100P0DJ07 73 aa17.18■□□□□ 0.34
SHMT1-206ENST00000579558 RPUSD4Q96CM3 377 aaKnown RBP17.18■□□□□ 0.34
SHMT1-206ENST00000579558 TMEM189A5PLL7 270 aa17.17■□□□□ 0.34
SHMT1-206ENST00000579558 SLC17A3O00476 420 aa17.17■□□□□ 0.34
SHMT1-206ENST00000579558 MPC2O95563 127 aa17.17■□□□□ 0.34
SHMT1-206ENST00000579558 PRB4P10163 310 aaPredicted RBP17.17■□□□□ 0.34
SHMT1-206ENST00000579558 EMP1P54849 157 aa17.17■□□□□ 0.34
SHMT1-206ENST00000579558 RHOBP62745 196 aa17.17■□□□□ 0.34
SHMT1-206ENST00000579558 TMEM208Q9BTX3 173 aa17.17■□□□□ 0.34
SHMT1-206ENST00000579558 RNF126Q9BV68 326 aa17.17■□□□□ 0.34
SHMT1-206ENST00000579558 H3BQ15 152 aa17.16■□□□□ 0.34
SHMT1-206ENST00000579558 BOLA2-SMG1P6H3BVE0 249 aa17.16■□□□□ 0.34
SHMT1-206ENST00000579558 INSP01308 110 aa17.16■□□□□ 0.34
SHMT1-206ENST00000579558 HBE1P02100 147 aa17.16■□□□□ 0.34
SHMT1-206ENST00000579558 ZNF767PQ75MW2 155 aa17.16■□□□□ 0.34
SHMT1-206ENST00000579558 PPP1R14DQ9NXH3 145 aa17.16■□□□□ 0.34
SHMT1-206ENST00000579558 ALG5Q9Y673 324 aa17.16■□□□□ 0.34
SHMT1-206ENST00000579558 TRAV10A0A0B4J240 114 aa17.15■□□□□ 0.34
SHMT1-206ENST00000579558 PTTG1O95997 202 aa17.15■□□□□ 0.34
SHMT1-206ENST00000579558 GUK1Q16774 197 aa17.15■□□□□ 0.34
SHMT1-206ENST00000579558 C12orf74Q32Q52 190 aa17.15■□□□□ 0.34
SHMT1-206ENST00000579558 SAT2Q96F10 170 aaPredicted RBP17.15■□□□□ 0.34
SHMT1-206ENST00000579558 IGLL5B9A064 214 aa17.14■□□□□ 0.33
SHMT1-206ENST00000579558 CRXO43186 299 aaPredicted RBP17.14■□□□□ 0.33
SHMT1-206ENST00000579558 RRN3P1Q2M238 152 aa17.14■□□□□ 0.33
SHMT1-206ENST00000579558 GCSAMLQ5JQS6 135 aa17.14■□□□□ 0.33
SHMT1-206ENST00000579558 BAP18Q8IXM2 172 aa17.14■□□□□ 0.33
SHMT1-206ENST00000579558 WDR61Q9GZS3 305 aaKnown RBP17.14■□□□□ 0.33
SHMT1-206ENST00000579558 HSPB11Q9Y547 144 aa17.14■□□□□ 0.33
SHMT1-206ENST00000579558 LOC102723971A0A1B0GUV8 181 aa17.13■□□□□ 0.33
SHMT1-206ENST00000579558 SPART-AS1P0CW21 52 aa17.13■□□□□ 0.33
SHMT1-206ENST00000579558 ATP5SQ99766 215 aa17.13■□□□□ 0.33
SHMT1-206ENST00000579558 KCNIP2Q9NS61 270 aa17.13■□□□□ 0.33
SHMT1-206ENST00000579558 ZNF586Q9NXT0 402 aa17.13■□□□□ 0.33
SHMT1-206ENST00000579558 MBD2Q9UBB5 411 aa17.13■□□□□ 0.33
SHMT1-206ENST00000579558 BIRC6Q9NR09 4857 aa17.13■□□□□ 0.33
SHMT1-206ENST00000579558 TRAV12-2A0A075B6T6 113 aa17.12■□□□□ 0.33
SHMT1-206ENST00000579558 TCTAP57738 103 aa17.12■□□□□ 0.33
SHMT1-206ENST00000579558 TMEM14CQ9P0S9 112 aa17.12■□□□□ 0.33
SHMT1-206ENST00000579558 RPL12P30050 165 aaKnown RBP17.11■□□□□ 0.33
SHMT1-206ENST00000579558 OR10J6PQ8NGY7 276 aa17.11■□□□□ 0.33
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms