RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 TRIM16LQ309B1 348 aa10.3□□□□□ -0.76
VPS53-218ENST00000575207 OR10J3Q5JRS4 329 aa10.3□□□□□ -0.76
VPS53-218ENST00000575207 ATP6V0E2Q8NHE4 81 aa10.3□□□□□ -0.76
VPS53-218ENST00000575207 A0A0G2JRQ6 117 aa10.29□□□□□ -0.76
VPS53-218ENST00000575207 HRH1P35367 487 aa10.29□□□□□ -0.76
VPS53-218ENST00000575207 AARDQ4LEZ3 155 aa10.29□□□□□ -0.76
VPS53-218ENST00000575207 SH2D6Q7Z4S9 175 aa10.29□□□□□ -0.76
VPS53-218ENST00000575207 IQCF2Q8IXL9 164 aa10.29□□□□□ -0.76
VPS53-218ENST00000575207 OR5H2Q8NGV7 314 aa10.29□□□□□ -0.76
VPS53-218ENST00000575207 AUNIPQ9H7T9 357 aa10.29□□□□□ -0.76
VPS53-218ENST00000575207 GABARAPH6UMI1 98 aa10.28□□□□□ -0.76
VPS53-218ENST00000575207 GABARAPO95166 117 aa10.28□□□□□ -0.76
VPS53-218ENST00000575207 TAS2R46P59540 309 aa10.28□□□□□ -0.76
VPS53-218ENST00000575207 MLLT11Q13015 90 aaPredicted RBP10.28□□□□□ -0.76
VPS53-218ENST00000575207 NMSQ5H8A3 153 aa10.28□□□□□ -0.76
VPS53-218ENST00000575207 FAM219AQ8IW50 185 aa10.28□□□□□ -0.76
VPS53-218ENST00000575207 CEBPZOSA8MTT3 80 aa10.27□□□□□ -0.77
VPS53-218ENST00000575207 PTGES3LE9PB15 166 aa10.27□□□□□ -0.77
VPS53-218ENST00000575207 ANXA2RQ3ZCQ2 193 aa10.27□□□□□ -0.77
VPS53-218ENST00000575207 C8orf59Q8N0T1 100 aaPredicted RBP10.27□□□□□ -0.77
VPS53-218ENST00000575207 ZBTB8BQ8NAP8 495 aaPredicted RBP10.27□□□□□ -0.77
VPS53-218ENST00000575207 RNASE11Q8TAA1 199 aaKnown RBP10.27□□□□□ -0.77
VPS53-218ENST00000575207 LRRC20Q8TCA0 184 aa10.27□□□□□ -0.77
VPS53-218ENST00000575207 CFDP00746 253 aaPredicted RBP10.26□□□□□ -0.77
VPS53-218ENST00000575207 SFTA3P0C7M3 94 aa10.26□□□□□ -0.77
VPS53-218ENST00000575207 NHLRC2Q8NBF2 726 aa10.26□□□□□ -0.77
VPS53-218ENST00000575207 ZNF431Q8TF32 576 aaPredicted RBP10.26□□□□□ -0.77
VPS53-218ENST00000575207 SLC35E1Q96K37 410 aa10.26□□□□□ -0.77
VPS53-218ENST00000575207 TP53RKQ96S44 253 aa10.26□□□□□ -0.77
VPS53-218ENST00000575207 TRGV9Q99603 122 aa10.26□□□□□ -0.77
VPS53-218ENST00000575207 CTNNBIP1Q9NSA3 81 aaPredicted RBP10.26□□□□□ -0.77
VPS53-218ENST00000575207 NOTOA8MTQ0 251 aa10.25□□□□□ -0.77
VPS53-218ENST00000575207 GNAO1P09471 354 aa10.25□□□□□ -0.77
VPS53-218ENST00000575207 S100A7P31151 101 aa10.25□□□□□ -0.77
VPS53-218ENST00000575207 LEPP41159 167 aa10.25□□□□□ -0.77
VPS53-218ENST00000575207 IBA57Q5T440 356 aaKnown RBP10.25□□□□□ -0.77
VPS53-218ENST00000575207 REG3GQ6UW15 175 aa10.25□□□□□ -0.77
VPS53-218ENST00000575207 EIF4E3Q8N5X7 224 aaKnown RBP10.25□□□□□ -0.77
VPS53-218ENST00000575207 ZNF479Q96JC4 524 aa10.25□□□□□ -0.77
VPS53-218ENST00000575207 A0A0A6YYH2 397 aa10.24□□□□□ -0.77
VPS53-218ENST00000575207 A6NJ64 397 aa10.24□□□□□ -0.77
VPS53-218ENST00000575207 ORM2P19652 201 aa10.24□□□□□ -0.77
VPS53-218ENST00000575207 GGNBP1Q5YKI7 109 aa10.24□□□□□ -0.77
VPS53-218ENST00000575207 TEPPQ6URK8 271 aa10.24□□□□□ -0.77
VPS53-218ENST00000575207 DHRSXQ8N5I4 330 aa10.24□□□□□ -0.77
VPS53-218ENST00000575207 TMEM147Q9BVK8 224 aa10.24□□□□□ -0.77
VPS53-218ENST00000575207 LOC100131303A0A0U1RQF7 123 aa10.23□□□□□ -0.77
VPS53-218ENST00000575207 LINC00854A0A1B0GVQ3 168 aa10.23□□□□□ -0.77
VPS53-218ENST00000575207 RPL7P18124 248 aaKnown RBP10.23□□□□□ -0.77
VPS53-218ENST00000575207 NAT1P18440 290 aa10.23□□□□□ -0.77
VPS53-218ENST00000575207 GPX4P36969 197 aaPredicted RBP10.23□□□□□ -0.77
VPS53-218ENST00000575207 UCP3P55916 312 aa10.23□□□□□ -0.77
VPS53-218ENST00000575207 TOR2AQ5JU69 321 aa10.23□□□□□ -0.77
VPS53-218ENST00000575207 C10orf67Q8IYJ2 551 aa10.23□□□□□ -0.77
VPS53-218ENST00000575207 SLC25A38Q96DW6 304 aa10.23□□□□□ -0.77
VPS53-218ENST00000575207 VAX2Q9UIW0 290 aa10.23□□□□□ -0.77
VPS53-218ENST00000575207 ANAPC10Q9UM13 185 aa10.23□□□□□ -0.77
VPS53-218ENST00000575207 A0A087X0K7 114 aa10.22□□□□□ -0.77
VPS53-218ENST00000575207 TRAV8-1A0A0A6YYK1 113 aa10.22□□□□□ -0.77
VPS53-218ENST00000575207 CRYM-AS1A6NIL9 109 aa10.22□□□□□ -0.77
VPS53-218ENST00000575207 TSPAN5P62079 268 aa10.22□□□□□ -0.77
VPS53-218ENST00000575207 Q8N3U1 123 aa10.22□□□□□ -0.77
VPS53-218ENST00000575207 RMI2Q96E14 147 aa10.22□□□□□ -0.77
VPS53-218ENST00000575207 ODF3Q96PU9 254 aa10.22□□□□□ -0.77
VPS53-218ENST00000575207 MGLLQ99685 303 aa10.22□□□□□ -0.77
VPS53-218ENST00000575207 IGKV1OR2-108A0A075B7D4 117 aa10.21□□□□□ -0.77
VPS53-218ENST00000575207 RND3P61587 244 aa10.21□□□□□ -0.77
VPS53-218ENST00000575207 CIRBPQ14011 172 aaKnown RBP10.21□□□□□ -0.77
VPS53-218ENST00000575207 FAM122CQ6P4D5 195 aa10.21□□□□□ -0.77
VPS53-218ENST00000575207 KIF25-AS1Q9Y6Z4 181 aa10.21□□□□□ -0.77
VPS53-218ENST00000575207 U3KQ87 197 aa10.21□□□□□ -0.77
VPS53-218ENST00000575207 C3orf85A0A1B0GTC6 90 aa10.2□□□□□ -0.78
VPS53-218ENST00000575207 C7orf71A4D174 169 aa10.2□□□□□ -0.78
VPS53-218ENST00000575207 PRAC2D3DTV9 90 aa10.2□□□□□ -0.78
VPS53-218ENST00000575207 H3BRN7 92 aa10.2□□□□□ -0.78
VPS53-218ENST00000575207 SLC25A5P05141 298 aaKnown RBP10.2□□□□□ -0.78
VPS53-218ENST00000575207 CT45A10P0DMU9 189 aa10.2□□□□□ -0.78
VPS53-218ENST00000575207 PGAM2P15259 253 aa10.2□□□□□ -0.78
VPS53-218ENST00000575207 C14orf177Q52M58 125 aa10.2□□□□□ -0.78
VPS53-218ENST00000575207 C22orf42Q6IC83 251 aa10.2□□□□□ -0.78
VPS53-218ENST00000575207 OR10G4Q8NGN3 311 aa10.2□□□□□ -0.78
VPS53-218ENST00000575207 PHOX2AO14813 284 aa10.19□□□□□ -0.78
VPS53-218ENST00000575207 SP6Q3SY56 376 aa10.19□□□□□ -0.78
VPS53-218ENST00000575207 GPR107Q5VW38 600 aa10.19□□□□□ -0.78
VPS53-218ENST00000575207 LGI3Q8N145 548 aa10.19□□□□□ -0.78
VPS53-218ENST00000575207 BPIFCQ8NFQ6 507 aa10.19□□□□□ -0.78
VPS53-218ENST00000575207 OR5H6Q8NGV6 325 aa10.19□□□□□ -0.78
VPS53-218ENST00000575207 SHANK2-AS3Q9BTD1 123 aa10.19□□□□□ -0.78
VPS53-218ENST00000575207 SSR3Q9UNL2 185 aa10.19□□□□□ -0.78
VPS53-218ENST00000575207 IGKV2D-24A0A075B6R9 120 aa10.18□□□□□ -0.78
VPS53-218ENST00000575207 TRDV1A0A1B0GX56 115 aa10.18□□□□□ -0.78
VPS53-218ENST00000575207 GGTLC3B5MD39 225 aa10.18□□□□□ -0.78
VPS53-218ENST00000575207 RGS10O43665 173 aa10.18□□□□□ -0.78
VPS53-218ENST00000575207 PI3P19957 117 aa10.18□□□□□ -0.78
VPS53-218ENST00000575207 HLA-DMAP28067 261 aa10.18□□□□□ -0.78
VPS53-218ENST00000575207 PIGPP57054 158 aa10.18□□□□□ -0.78
VPS53-218ENST00000575207 SPINK6Q6UWN8 80 aa10.18□□□□□ -0.78
VPS53-218ENST00000575207 SDIM1Q6ZPB5 146 aa10.18□□□□□ -0.78
VPS53-218ENST00000575207 DAZ4Q86SG3 579 aaKnown RBP10.18□□□□□ -0.78
VPS53-218ENST00000575207 LYSMD2Q8IV50 215 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 94.1 ms