RNA–Protein interactions for RNA: ENST00000568605.5

CLK3-224, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 1,047 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-224ENST00000568605 FXYD6-FXYD2A0A087WZ82 144 aa9.5□□□□□ -0.89
CLK3-224ENST00000568605 A0A0J9YX75 114 aa9.5□□□□□ -0.89
CLK3-224ENST00000568605 ZNF253O75346 499 aa9.5□□□□□ -0.89
CLK3-224ENST00000568605 IGLC2P0DOY2 106 aa9.5□□□□□ -0.89
CLK3-224ENST00000568605 FFAR4Q5NUL3 377 aa9.5□□□□□ -0.89
CLK3-224ENST00000568605 MORN5Q5VZ52 161 aa9.5□□□□□ -0.89
CLK3-224ENST00000568605 RNF182Q8N6D2 247 aa9.5□□□□□ -0.89
CLK3-224ENST00000568605 C20orf173Q96LM9 149 aa9.5□□□□□ -0.89
CLK3-224ENST00000568605 TMEM14CQ9P0S9 112 aa9.5□□□□□ -0.89
CLK3-224ENST00000568605 TRAV8-2A0A0B4J237 113 aa9.49□□□□□ -0.89
CLK3-224ENST00000568605 A0A0J9YWU9 116 aa9.49□□□□□ -0.89
CLK3-224ENST00000568605 IGKV3-20P01619 116 aa9.49□□□□□ -0.89
CLK3-224ENST00000568605 TAS2R45P59539 299 aa9.49□□□□□ -0.89
CLK3-224ENST00000568605 RHOBP62745 196 aa9.49□□□□□ -0.89
CLK3-224ENST00000568605 PSG9Q00887 426 aa9.49□□□□□ -0.89
CLK3-224ENST00000568605 PDE6HQ13956 83 aa9.49□□□□□ -0.89
CLK3-224ENST00000568605 PSG3Q16557 428 aa9.49□□□□□ -0.89
CLK3-224ENST00000568605 C17orf77Q96MU5 243 aa9.49□□□□□ -0.89
CLK3-224ENST00000568605 C11orf68Q9H3H3 251 aaKnown RBP9.49□□□□□ -0.89
CLK3-224ENST00000568605 ZNF331Q9NQX6 463 aaPredicted RBP9.49□□□□□ -0.89
CLK3-224ENST00000568605 FUT9Q9Y231 359 aa9.49□□□□□ -0.89
CLK3-224ENST00000568605 TIMM9Q9Y5J7 89 aa9.49□□□□□ -0.89
CLK3-224ENST00000568605 TRAV5A0A0B4J249 113 aa9.48□□□□□ -0.89
CLK3-224ENST00000568605 F6UB75 175 aa9.48□□□□□ -0.89
CLK3-224ENST00000568605 AMBPP02760 352 aa9.48□□□□□ -0.89
CLK3-224ENST00000568605 MIFP14174 115 aa9.48□□□□□ -0.89
CLK3-224ENST00000568605 DEFB1P60022 68 aa9.48□□□□□ -0.89
CLK3-224ENST00000568605 KHDC3LQ587J8 217 aa9.48□□□□□ -0.89
CLK3-224ENST00000568605 GCSAMLQ5JQS6 135 aa9.48□□□□□ -0.89
CLK3-224ENST00000568605 IGFL4Q6B9Z1 124 aa9.48□□□□□ -0.89
CLK3-224ENST00000568605 MFFQ9GZY8 342 aa9.48□□□□□ -0.89
CLK3-224ENST00000568605 AAMDCQ9H7C9 122 aa9.48□□□□□ -0.89
CLK3-224ENST00000568605 XCL2Q9UBD3 114 aa9.48□□□□□ -0.89
CLK3-224ENST00000568605 BORCS7-ASMTA0A0B4J1R7 106 aa9.47□□□□□ -0.89
CLK3-224ENST00000568605 SLC17A3O00476 420 aa9.47□□□□□ -0.89
CLK3-224ENST00000568605 HIST1H1EP10412 219 aaKnown RBP9.47□□□□□ -0.89
CLK3-224ENST00000568605 CNN1P51911 297 aaKnown RBP9.47□□□□□ -0.89
CLK3-224ENST00000568605 HIST1H1AQ02539 215 aaPredicted RBP9.47□□□□□ -0.89
CLK3-224ENST00000568605 ACOT6Q3I5F7 207 aaPredicted RBP9.47□□□□□ -0.89
CLK3-224ENST00000568605 MIR17HGQ75NE6 70 aa9.47□□□□□ -0.89
CLK3-224ENST00000568605 OR8A1Q8NGG7 326 aa9.47□□□□□ -0.89
CLK3-224ENST00000568605 RPUSD4Q96CM3 377 aaKnown RBP9.47□□□□□ -0.89
CLK3-224ENST00000568605 PSMG3Q9BT73 122 aaPredicted RBP9.47□□□□□ -0.89
CLK3-224ENST00000568605 PPP1R14DQ9NXH3 145 aa9.47□□□□□ -0.89
CLK3-224ENST00000568605 TNFSF18Q9UNG2 199 aa9.47□□□□□ -0.89
CLK3-224ENST00000568605 GOLT1BQ9Y3E0 138 aa9.47□□□□□ -0.89
CLK3-224ENST00000568605 RNF222A6NCQ9 220 aa9.46□□□□□ -0.9
CLK3-224ENST00000568605 A8MTW9 85 aa9.46□□□□□ -0.9
CLK3-224ENST00000568605 ZNF705EA8MWA4 302 aaPredicted RBP9.46□□□□□ -0.9
CLK3-224ENST00000568605 H3BQ15 152 aa9.46□□□□□ -0.9
CLK3-224ENST00000568605 OR7C2O60412 319 aa9.46□□□□□ -0.9
CLK3-224ENST00000568605 GIG44P09565 113 aaPredicted RBP9.46□□□□□ -0.9
CLK3-224ENST00000568605 M6PRP20645 277 aa9.46□□□□□ -0.9
CLK3-224ENST00000568605 CASC10Q5T4H9 136 aa9.46□□□□□ -0.9
CLK3-224ENST00000568605 HSD17B11Q8NBQ5 300 aa9.46□□□□□ -0.9
CLK3-224ENST00000568605 OR10J6PQ8NGY7 276 aa9.46□□□□□ -0.9
CLK3-224ENST00000568605 MRPL53Q96EL3 112 aaKnown RBP9.46□□□□□ -0.9
CLK3-224ENST00000568605 PAXXQ9BUH6 204 aa9.46□□□□□ -0.9
CLK3-224ENST00000568605 SLC25A2Q9BXI2 301 aa9.46□□□□□ -0.9
CLK3-224ENST00000568605 SLC35B3Q9H1N7 401 aa9.46□□□□□ -0.9
CLK3-224ENST00000568605 OR51M1Q9H341 326 aa9.46□□□□□ -0.9
CLK3-224ENST00000568605 WFDC1Q9HC57 220 aa9.46□□□□□ -0.9
CLK3-224ENST00000568605 ZNF586Q9NXT0 402 aa9.46□□□□□ -0.9
CLK3-224ENST00000568605 PRELID1Q9Y255 219 aa9.46□□□□□ -0.9
CLK3-224ENST00000568605 DNAH7Q8WXX0 4024 aa9.46□□□□□ -0.9
CLK3-224ENST00000568605 TRBV19A0A075B6N1 114 aa9.45□□□□□ -0.9
CLK3-224ENST00000568605 A0A1W2PPV4 95 aa9.45□□□□□ -0.9
CLK3-224ENST00000568605 H3BTX0 84 aa9.45□□□□□ -0.9
CLK3-224ENST00000568605 BOLA2-SMG1P6H3BVE0 249 aa9.45□□□□□ -0.9
CLK3-224ENST00000568605 ARPC5O15511 151 aa9.45□□□□□ -0.9
CLK3-224ENST00000568605 INSP01308 110 aa9.45□□□□□ -0.9
CLK3-224ENST00000568605 SNRPCP09234 159 aaKnown RBP9.45□□□□□ -0.9
CLK3-224ENST00000568605 PYYP10082 97 aa9.45□□□□□ -0.9
CLK3-224ENST00000568605 HLA-DMBP28068 263 aa9.45□□□□□ -0.9
CLK3-224ENST00000568605 UBE2L3P68036 154 aaKnown RBP9.45□□□□□ -0.9
CLK3-224ENST00000568605 Q5BKY6 102 aa9.45□□□□□ -0.9
CLK3-224ENST00000568605 ZFAND6Q6FIF0 208 aa9.45□□□□□ -0.9
CLK3-224ENST00000568605 CSNK1G2-AS1Q8NCQ2 148 aa9.45□□□□□ -0.9
CLK3-224ENST00000568605 BLNKQ8WV28 456 aa9.45□□□□□ -0.9
CLK3-224ENST00000568605 SAT2Q96F10 170 aaPredicted RBP9.45□□□□□ -0.9
CLK3-224ENST00000568605 TAAR5O14804 337 aa9.44□□□□□ -0.9
CLK3-224ENST00000568605 MBP02144 154 aa9.44□□□□□ -0.9
CLK3-224ENST00000568605 FXYD7P58549 80 aa9.44□□□□□ -0.9
CLK3-224ENST00000568605 SERF2P84101 59 aa9.44□□□□□ -0.9
CLK3-224ENST00000568605 Q8NAQ8 132 aa9.44□□□□□ -0.9
CLK3-224ENST00000568605 OR2G3Q8NGZ4 309 aa9.44□□□□□ -0.9
CLK3-224ENST00000568605 GNPNAT1Q96EK6 184 aaPredicted RBP9.44□□□□□ -0.9
CLK3-224ENST00000568605 FAM167A-AS1Q96KT0 104 aa9.44□□□□□ -0.9
CLK3-224ENST00000568605 IGF2BP2-AS1Q96M15 143 aa9.44□□□□□ -0.9
CLK3-224ENST00000568605 TMEM208Q9BTX3 173 aa9.44□□□□□ -0.9
CLK3-224ENST00000568605 IGHV3OR16-12A0A075B7B8 117 aa9.43□□□□□ -0.9
CLK3-224ENST00000568605 IGHV4-28A0A0C4DH34 117 aa9.43□□□□□ -0.9
CLK3-224ENST00000568605 CXorf65A6NEN9 183 aa9.43□□□□□ -0.9
CLK3-224ENST00000568605 NUPR2A6NF83 97 aa9.43□□□□□ -0.9
CLK3-224ENST00000568605 SMIM9A6NGZ8 99 aa9.43□□□□□ -0.9
CLK3-224ENST00000568605 NBEAP1P0C6P0 100 aa9.43□□□□□ -0.9
CLK3-224ENST00000568605 ATP6V0CP27449 155 aa9.43□□□□□ -0.9
CLK3-224ENST00000568605 ZNF345Q14585 488 aa9.43□□□□□ -0.9
CLK3-224ENST00000568605 SPINK13Q1W4C9 94 aa9.43□□□□□ -0.9
CLK3-224ENST00000568605 AMTNQ6UX39 209 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms