RNA–Protein interactions for RNA: ENST00000568029.5

VPS39-209, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 5

Gene VPS39, Length 791 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-209ENST00000568029 HELTA6NFD8 242 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 ODF3BA8MYP8 253 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 NBR2O15453 112 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 FOXH1O75593 365 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 IGHV2-5P01817 119 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 REG1AP05451 166 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 S100A9P06702 114 aaKnown RBP4.62□□□□□ -1.67
VPS39-209ENST00000568029 CRYGCP07315 174 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 DEFA4P12838 97 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 CNTFRP26992 372 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 PDLIM4P50479 330 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 MFAP4P55083 255 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 SNRPEP62304 92 aaKnown RBP4.62□□□□□ -1.67
VPS39-209ENST00000568029 KIAA0141Q14154 515 aaPredicted RBP4.62□□□□□ -1.67
VPS39-209ENST00000568029 HES1Q14469 280 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 MMDQ15546 238 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 MRGPRG-AS1Q2M3A8 158 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 SPATA31B1PQ5VZV4 182 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 HCP5Q6MZN7 132 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 ZNF343Q6P1L6 599 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 VMO1Q7Z5L0 202 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 S100A7AQ86SG5 101 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 NPBQ8NG41 125 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 SRSF12Q8WXF0 261 aaKnown RBP4.62□□□□□ -1.67
VPS39-209ENST00000568029 C11orf52Q96A22 123 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 IMMP2LQ96T52 175 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 TCEAL7Q9BRU2 100 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 FBXL15Q9H469 300 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 FNDC4Q9H6D8 234 aaPredicted RBP4.62□□□□□ -1.67
VPS39-209ENST00000568029 C1RLQ9NZP8 487 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 TBL2Q9Y4P3 447 aaKnown RBP4.62□□□□□ -1.67
VPS39-209ENST00000568029 YTHDF2Q9Y5A9 579 aaKnown RBP4.62□□□□□ -1.67
VPS39-209ENST00000568029 HILPDAQ9Y5L2 63 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 F11RQ9Y624 299 aaKnown RBP4.62□□□□□ -1.67
VPS39-209ENST00000568029 DNAH3Q8TD57 4116 aa4.62□□□□□ -1.67
VPS39-209ENST00000568029 IGLV5-37A0A075B6J1 123 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 TGIF2-C20orf24A0A0A6YYL0 155 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 IGHV2-70DA0A0C4DH43 119 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 C5orf52A6NGY3 159 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 C9JCJ5 164 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 PPP5D1E7EU14 171 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 FCN1O00602 326 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 UBE2CO00762 179 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 HYPMO75409 117 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 NDUFA3O95167 84 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 S100A8P05109 93 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 PFN1P07737 140 aaKnown RBP4.61□□□□□ -1.67
VPS39-209ENST00000568029 CXCL1P09341 107 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 NPPCP23582 126 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 GATA2P23769 480 aaPredicted RBP4.61□□□□□ -1.67
VPS39-209ENST00000568029 BRS3P32247 399 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 GNG4P50150 75 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 DLX1P56177 255 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 RPL19P84098 196 aaKnown RBP4.61□□□□□ -1.67
VPS39-209ENST00000568029 PRB3Q04118 309 aaPredicted RBP4.61□□□□□ -1.67
VPS39-209ENST00000568029 LOXL1Q08397 574 aaPredicted RBP4.61□□□□□ -1.67
VPS39-209ENST00000568029 FXYD3Q14802 87 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 C5orf64Q2M2E5 130 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 CYB5R2Q6BCY4 276 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 LINC01551Q86U37 167 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 OR5T1Q8NG75 326 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 OR51G1Q8NGK1 321 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 OR10G8Q8NGN5 311 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 TMEM190Q8WZ59 177 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 GRAMD2BQ96HH9 432 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 PYGO2Q9BRQ0 406 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 PAXXQ9BUH6 204 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 OR51M1Q9H341 326 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 SRD5A3Q9H8P0 318 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 LPAR2Q9HBW0 351 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 RNF24Q9Y225 148 aa4.61□□□□□ -1.67
VPS39-209ENST00000568029 TANC2Q9HCD6 1990 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 DNAH9Q9NYC9 4486 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 IGKV1D-37A0A075B6S9 117 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 TRAV9-1A0A075B6T8 112 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 TRAV30A0A087WSZ9 112 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 hDV102S1A0JD36 115 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 PSMB11A5LHX3 300 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 NCBP2LA6PVI3 153 aaKnown RBP4.6□□□□□ -1.67
VPS39-209ENST00000568029 GGCTO75223 188 aaKnown RBP4.6□□□□□ -1.67
VPS39-209ENST00000568029 SCGB2A1O75556 95 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 FAM106CPP0CH98 169 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 ORM2P19652 201 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 RPL35P42766 123 aaKnown RBP4.6□□□□□ -1.67
VPS39-209ENST00000568029 UBE2E1P51965 193 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 NDUFA6P56556 154 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 TAS2R60P59551 318 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 PLP1P60201 277 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 UBE2L3P68036 154 aaKnown RBP4.6□□□□□ -1.67
VPS39-209ENST00000568029 LCN2P80188 198 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 ZNF90Q03938 601 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 FABP9Q0Z7S8 132 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 KLRD1Q13241 179 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 EBI3Q14213 229 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 TIGITQ495A1 244 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 ZNF562Q6V9R5 426 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 LINC00518Q8N0U6 118 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 OR5AU1Q8NGC0 362 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 OR1B1Q8NGR6 318 aa4.6□□□□□ -1.67
VPS39-209ENST00000568029 OCC1Q8TAD7 63 aa4.6□□□□□ -1.67
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms