RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 CA1P00915 261 aaPredicted RBP7.14□□□□□ -1.27
CLN3-220ENST00000566040 ZNF705DP0CH99 300 aaPredicted RBP7.14□□□□□ -1.27
CLN3-220ENST00000566040 ZNF705BP0CI00 300 aaPredicted RBP7.14□□□□□ -1.27
CLN3-220ENST00000566040 PET100P0DJ07 73 aa7.14□□□□□ -1.27
CLN3-220ENST00000566040 PYYP10082 97 aa7.14□□□□□ -1.27
CLN3-220ENST00000566040 RPL7P18124 248 aaKnown RBP7.14□□□□□ -1.27
CLN3-220ENST00000566040 GALR1P47211 349 aa7.14□□□□□ -1.27
CLN3-220ENST00000566040 FOXI2Q6ZQN5 318 aa7.14□□□□□ -1.27
CLN3-220ENST00000566040 MIR17HGQ75NE6 70 aa7.14□□□□□ -1.27
CLN3-220ENST00000566040 Q8NAQ8 132 aa7.14□□□□□ -1.27
CLN3-220ENST00000566040 SLC35B3Q9H1N7 401 aa7.14□□□□□ -1.27
CLN3-220ENST00000566040 ELOA3CA0A087WX78 387 aaPredicted RBP7.13□□□□□ -1.27
CLN3-220ENST00000566040 A0A0J9YWU9 116 aa7.13□□□□□ -1.27
CLN3-220ENST00000566040 CRXO43186 299 aaPredicted RBP7.13□□□□□ -1.27
CLN3-220ENST00000566040 RBMY1A1P0DJD3 496 aaKnown RBP7.13□□□□□ -1.27
CLN3-220ENST00000566040 RBMY1CP0DJD4 496 aa7.13□□□□□ -1.27
CLN3-220ENST00000566040 MEOX2P50222 304 aa7.13□□□□□ -1.27
CLN3-220ENST00000566040 SNRPD3P62318 126 aaKnown RBP7.13□□□□□ -1.27
CLN3-220ENST00000566040 RBMY1FQ15415 496 aaKnown RBP7.13□□□□□ -1.27
CLN3-220ENST00000566040 Q6ZNX1 250 aa7.13□□□□□ -1.27
CLN3-220ENST00000566040 STHQ8IWL8 128 aa7.13□□□□□ -1.27
CLN3-220ENST00000566040 OR2T35Q8NGX2 323 aa7.13□□□□□ -1.27
CLN3-220ENST00000566040 MUC7Q8TAX7 377 aa7.13□□□□□ -1.27
CLN3-220ENST00000566040 GATAD1Q8WUU5 269 aa7.13□□□□□ -1.27
CLN3-220ENST00000566040 ASB13Q8WXK3 278 aa7.13□□□□□ -1.27
CLN3-220ENST00000566040 FXYD5Q96DB9 178 aa7.13□□□□□ -1.27
CLN3-220ENST00000566040 LINC00052Q96N35 136 aa7.13□□□□□ -1.27
CLN3-220ENST00000566040 HRH4Q9H3N8 390 aa7.13□□□□□ -1.27
CLN3-220ENST00000566040 CLEC5AQ9NY25 188 aa7.13□□□□□ -1.27
CLN3-220ENST00000566040 TMEM14CQ9P0S9 112 aa7.13□□□□□ -1.27
CLN3-220ENST00000566040 ZNF705FA8MVS1 300 aaPredicted RBP7.12□□□□□ -1.27
CLN3-220ENST00000566040 SPP1P10451 314 aa7.12□□□□□ -1.27
CLN3-220ENST00000566040 FXYD7P58549 80 aa7.12□□□□□ -1.27
CLN3-220ENST00000566040 KIR3DS1Q14943 382 aa7.12□□□□□ -1.27
CLN3-220ENST00000566040 CASC10Q5T4H9 136 aa7.12□□□□□ -1.27
CLN3-220ENST00000566040 FAM78BQ5VT40 261 aa7.12□□□□□ -1.27
CLN3-220ENST00000566040 ZNF705AQ6ZN79 300 aaPredicted RBP7.12□□□□□ -1.27
CLN3-220ENST00000566040 SSX7Q7RTT5 188 aa7.12□□□□□ -1.27
CLN3-220ENST00000566040 OR1L4Q8NGR5 311 aa7.12□□□□□ -1.27
CLN3-220ENST00000566040 ST6GAL2Q96JF0 529 aa7.12□□□□□ -1.27
CLN3-220ENST00000566040 C16orf92Q96LL3 132 aa7.12□□□□□ -1.27
CLN3-220ENST00000566040 PFDN5Q99471 154 aa7.12□□□□□ -1.27
CLN3-220ENST00000566040 SH3BGRL3Q9H299 93 aa7.12□□□□□ -1.27
CLN3-220ENST00000566040 CYTL1Q9NRR1 136 aa7.12□□□□□ -1.27
CLN3-220ENST00000566040 PLA2G2EQ9NZK7 142 aa7.12□□□□□ -1.27
CLN3-220ENST00000566040 PFDN2Q9UHV9 154 aa7.12□□□□□ -1.27
CLN3-220ENST00000566040 KMT2AQ03164 3969 aa7.12□□□□□ -1.27
CLN3-220ENST00000566040 TRBV19A0A075B6N1 114 aa7.11□□□□□ -1.27
CLN3-220ENST00000566040 M0R3E3 92 aa7.11□□□□□ -1.27
CLN3-220ENST00000566040 IGKV3-20P01619 116 aa7.11□□□□□ -1.27
CLN3-220ENST00000566040 ATF4P18848 351 aaPredicted RBP7.11□□□□□ -1.27
CLN3-220ENST00000566040 CXCL2P19875 107 aa7.11□□□□□ -1.27
CLN3-220ENST00000566040 CNN1P51911 297 aaKnown RBP7.11□□□□□ -1.27
CLN3-220ENST00000566040 RAB2AP61019 212 aa7.11□□□□□ -1.27
CLN3-220ENST00000566040 RAB31Q13636 194 aa7.11□□□□□ -1.27
CLN3-220ENST00000566040 PSG3Q16557 428 aa7.11□□□□□ -1.27
CLN3-220ENST00000566040 RPL7L1Q6DKI1 246 aaKnown RBP7.11□□□□□ -1.27
CLN3-220ENST00000566040 MORN3Q6PF18 240 aaPredicted RBP7.11□□□□□ -1.27
CLN3-220ENST00000566040 LCN15Q6UWW0 184 aa7.11□□□□□ -1.27
CLN3-220ENST00000566040 BPIFA4PQ86YQ2 179 aa7.11□□□□□ -1.27
CLN3-220ENST00000566040 C1orf158Q8N1D5 194 aa7.11□□□□□ -1.27
CLN3-220ENST00000566040 PHYHIPLQ96FC7 376 aa7.11□□□□□ -1.27
CLN3-220ENST00000566040 C11orf68Q9H3H3 251 aaKnown RBP7.11□□□□□ -1.27
CLN3-220ENST00000566040 FXYD6-FXYD2A0A087WZ82 144 aa7.1□□□□□ -1.27
CLN3-220ENST00000566040 DEFB4AO15263 64 aa7.1□□□□□ -1.27
CLN3-220ENST00000566040 ATP6V0CP27449 155 aa7.1□□□□□ -1.27
CLN3-220ENST00000566040 ID1P41134 155 aa7.1□□□□□ -1.27
CLN3-220ENST00000566040 FGL1Q08830 312 aa7.1□□□□□ -1.27
CLN3-220ENST00000566040 FFAR4Q5NUL3 377 aa7.1□□□□□ -1.27
CLN3-220ENST00000566040 Q6ZRG5 221 aa7.1□□□□□ -1.27
CLN3-220ENST00000566040 RPP25LQ8N5L8 163 aaKnown RBP7.1□□□□□ -1.27
CLN3-220ENST00000566040 OR8A1Q8NGG7 326 aa7.1□□□□□ -1.27
CLN3-220ENST00000566040 OR2G3Q8NGZ4 309 aa7.1□□□□□ -1.27
CLN3-220ENST00000566040 OR11H2Q8NH07 326 aa7.1□□□□□ -1.27
CLN3-220ENST00000566040 IL17DQ8TAD2 202 aa7.1□□□□□ -1.27
CLN3-220ENST00000566040 RPRMQ9NS64 109 aa7.1□□□□□ -1.27
CLN3-220ENST00000566040 XCL2Q9UBD3 114 aa7.1□□□□□ -1.27
CLN3-220ENST00000566040 FUT9Q9Y231 359 aa7.1□□□□□ -1.27
CLN3-220ENST00000566040 TIMM9Q9Y5J7 89 aa7.1□□□□□ -1.27
CLN3-220ENST00000566040 IGHV4-28A0A0C4DH34 117 aa7.09□□□□□ -1.27
CLN3-220ENST00000566040 M0R2Z0 102 aa7.09□□□□□ -1.27
CLN3-220ENST00000566040 ZNF253O75346 499 aa7.09□□□□□ -1.27
CLN3-220ENST00000566040 PRM2P04554 102 aa7.09□□□□□ -1.27
CLN3-220ENST00000566040 HIST1H1EP10412 219 aaKnown RBP7.09□□□□□ -1.27
CLN3-220ENST00000566040 CD300CQ08708 224 aa7.09□□□□□ -1.27
CLN3-220ENST00000566040 ZNF726P1Q15940 193 aa7.09□□□□□ -1.27
CLN3-220ENST00000566040 SAMD13Q5VXD3 122 aa7.09□□□□□ -1.27
CLN3-220ENST00000566040 ZFAND6Q6FIF0 208 aa7.09□□□□□ -1.27
CLN3-220ENST00000566040 EXOC3-AS1Q8N2X6 119 aa7.09□□□□□ -1.27
CLN3-220ENST00000566040 HSD17B11Q8NBQ5 300 aa7.09□□□□□ -1.27
CLN3-220ENST00000566040 RPUSD4Q96CM3 377 aaKnown RBP7.09□□□□□ -1.27
CLN3-220ENST00000566040 FAM19A4Q96LR4 140 aa7.09□□□□□ -1.27
CLN3-220ENST00000566040 RARRES2Q99969 163 aa7.09□□□□□ -1.27
CLN3-220ENST00000566040 SLC50A1Q9BRV3 221 aa7.09□□□□□ -1.27
CLN3-220ENST00000566040 MRPL32Q9BYC8 188 aaKnown RBP7.09□□□□□ -1.27
CLN3-220ENST00000566040 CELA1Q9UNI1 258 aa7.09□□□□□ -1.27
CLN3-220ENST00000566040 A0A1B0GVG6 124 aa7.08□□□□□ -1.28
CLN3-220ENST00000566040 PLAC8L1A1L4L8 177 aa7.08□□□□□ -1.28
CLN3-220ENST00000566040 NPIPB6E9PJ23 425 aa7.08□□□□□ -1.28
CLN3-220ENST00000566040 C3orf84H3BNL1 204 aa7.08□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms