RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 CNPY1Q3B7I2 92 aa13.23□□□□□ -0.29
CLN3-218ENST00000565688 BAP18Q8IXM2 172 aa13.23□□□□□ -0.29
CLN3-218ENST00000565688 CCNKO75909 580 aa13.22□□□□□ -0.29
CLN3-218ENST00000565688 SCGB1D2O95969 90 aa13.22□□□□□ -0.29
CLN3-218ENST00000565688 CXCL2P19875 107 aa13.22□□□□□ -0.29
CLN3-218ENST00000565688 ANXA7P20073 488 aaKnown RBP13.22□□□□□ -0.29
CLN3-218ENST00000565688 ZNF546Q86UE3 836 aa13.22□□□□□ -0.29
CLN3-218ENST00000565688 GGACTQ9BVM4 153 aa13.22□□□□□ -0.29
CLN3-218ENST00000565688 ARV1Q9H2C2 271 aa13.22□□□□□ -0.29
CLN3-218ENST00000565688 TRAV12-2A0A075B6T6 113 aa13.21□□□□□ -0.29
CLN3-218ENST00000565688 LINC00854A0A1B0GVQ3 168 aa13.21□□□□□ -0.29
CLN3-218ENST00000565688 GOSR2O14653 212 aa13.21□□□□□ -0.29
CLN3-218ENST00000565688 PRM2P04554 102 aa13.21□□□□□ -0.29
CLN3-218ENST00000565688 DEFB130BP0DP73 79 aa13.21□□□□□ -0.29
CLN3-218ENST00000565688 DEFB130AP0DP74 79 aa13.21□□□□□ -0.29
CLN3-218ENST00000565688 TAS2R60P59551 318 aa13.21□□□□□ -0.29
CLN3-218ENST00000565688 PATE2Q6UY27 113 aa13.21□□□□□ -0.29
CLN3-218ENST00000565688 ZBTB8BQ8NAP8 495 aaPredicted RBP13.21□□□□□ -0.29
CLN3-218ENST00000565688 LINC01587Q99440 93 aa13.21□□□□□ -0.29
CLN3-218ENST00000565688 GSKIPQ9P0R6 139 aa13.21□□□□□ -0.29
CLN3-218ENST00000565688 PKD1P98161 4303 aa13.21□□□□□ -0.29
CLN3-218ENST00000565688 PCLOQ9Y6V0 5065 aa13.2□□□□□ -0.3
CLN3-218ENST00000565688 SLC38A11Q08AI6 406 aa13.2□□□□□ -0.3
CLN3-218ENST00000565688 LCN15Q6UWW0 184 aa13.2□□□□□ -0.3
CLN3-218ENST00000565688 MITD1Q8WV92 249 aa13.2□□□□□ -0.3
CLN3-218ENST00000565688 RPUSD4Q96CM3 377 aaKnown RBP13.2□□□□□ -0.3
CLN3-218ENST00000565688 ATG101Q9BSB4 218 aa13.2□□□□□ -0.3
CLN3-218ENST00000565688 RCL1Q9Y2P8 373 aaKnown RBP13.2□□□□□ -0.3
CLN3-218ENST00000565688 PLAC8L1A1L4L8 177 aa13.19□□□□□ -0.3
CLN3-218ENST00000565688 MRPS12O15235 138 aaKnown RBP13.19□□□□□ -0.3
CLN3-218ENST00000565688 ATP5G1P05496 136 aa13.19□□□□□ -0.3
CLN3-218ENST00000565688 AZU1P20160 251 aa13.19□□□□□ -0.3
CLN3-218ENST00000565688 BTCP35070 178 aa13.19□□□□□ -0.3
CLN3-218ENST00000565688 ATP5G3P48201 142 aa13.19□□□□□ -0.3
CLN3-218ENST00000565688 C1orf134Q5TEV5 83 aa13.19□□□□□ -0.3
CLN3-218ENST00000565688 LINC00305Q7Z4B0 112 aa13.19□□□□□ -0.3
CLN3-218ENST00000565688 C16orf74Q96GX8 76 aa13.19□□□□□ -0.3
CLN3-218ENST00000565688 SLC50A1Q9BRV3 221 aa13.19□□□□□ -0.3
CLN3-218ENST00000565688 CBY3A6NI87 242 aa13.18□□□□□ -0.3
CLN3-218ENST00000565688 F5H768 121 aa13.18□□□□□ -0.3
CLN3-218ENST00000565688 AGPAT2O15120 278 aa13.18□□□□□ -0.3
CLN3-218ENST00000565688 CDKN1BP46527 198 aa13.18□□□□□ -0.3
CLN3-218ENST00000565688 ZNF493Q6ZR52 646 aa13.18□□□□□ -0.3
CLN3-218ENST00000565688 BPIFA4PQ86YQ2 179 aa13.18□□□□□ -0.3
CLN3-218ENST00000565688 SDHCQ99643 169 aaPredicted RBP13.18□□□□□ -0.3
CLN3-218ENST00000565688 ZNF331Q9NQX6 463 aaPredicted RBP13.18□□□□□ -0.3
CLN3-218ENST00000565688 C7orf66A4D0T2 115 aa13.17□□□□□ -0.3
CLN3-218ENST00000565688 COX7A2P2O60397 106 aa13.17□□□□□ -0.3
CLN3-218ENST00000565688 MBPP02686 304 aaPredicted RBP13.17□□□□□ -0.3
CLN3-218ENST00000565688 ZNF846Q147U1 533 aa13.17□□□□□ -0.3
CLN3-218ENST00000565688 C20orf144Q9BQM9 153 aa13.17□□□□□ -0.3
CLN3-218ENST00000565688 TIMM8BQ9Y5J9 83 aaPredicted RBP13.17□□□□□ -0.3
CLN3-218ENST00000565688 NACAE9PAV3 2078 aa13.16□□□□□ -0.3
CLN3-218ENST00000565688 H7BYZ3 331 aa13.16□□□□□ -0.3
CLN3-218ENST00000565688 L7N2F9 121 aa13.16□□□□□ -0.3
CLN3-218ENST00000565688 IL7P13232 177 aa13.16□□□□□ -0.3
CLN3-218ENST00000565688 HTN1P15515 57 aa13.16□□□□□ -0.3
CLN3-218ENST00000565688 VAMP2P63027 116 aa13.16□□□□□ -0.3
CLN3-218ENST00000565688 ARL16Q0P5N6 197 aa13.16□□□□□ -0.3
CLN3-218ENST00000565688 RAB31Q13636 194 aa13.16□□□□□ -0.3
CLN3-218ENST00000565688 FCN2Q15485 313 aa13.16□□□□□ -0.3
CLN3-218ENST00000565688 DNAH11Q96DT5 4516 aa13.16□□□□□ -0.3
CLN3-218ENST00000565688 C10orf113Q5VZT2 155 aa13.15□□□□□ -0.3
CLN3-218ENST00000565688 OR10J6PQ8NGY7 276 aa13.15□□□□□ -0.3
CLN3-218ENST00000565688 TMEM263Q8WUH6 116 aaKnown RBP13.15□□□□□ -0.3
CLN3-218ENST00000565688 MGST2Q99735 147 aa13.15□□□□□ -0.3
CLN3-218ENST00000565688 C20orf85Q9H1P6 137 aa13.15□□□□□ -0.3
CLN3-218ENST00000565688 PXMP4Q9Y6I8 212 aa13.15□□□□□ -0.3
CLN3-218ENST00000565688 NUDT3O95989 172 aa13.14□□□□□ -0.31
CLN3-218ENST00000565688 CCL18P55774 89 aa13.14□□□□□ -0.31
CLN3-218ENST00000565688 RNASE8Q8TDE3 154 aaKnown RBP13.14□□□□□ -0.31
CLN3-218ENST00000565688 TMEM37Q8WXS4 190 aa13.14□□□□□ -0.31
CLN3-218ENST00000565688 CAMLGP49069 296 aa13.13□□□□□ -0.31
CLN3-218ENST00000565688 Q6ZRG5 221 aa13.13□□□□□ -0.31
CLN3-218ENST00000565688 DNAJC4Q9NNZ3 241 aa13.13□□□□□ -0.31
CLN3-218ENST00000565688 NOP10Q9NPE3 64 aaKnown RBP13.13□□□□□ -0.31
CLN3-218ENST00000565688 DYNC1H1Q14204 4646 aaKnown RBP13.12□□□□□ -0.31
CLN3-218ENST00000565688 IGLC2P0DOY2 106 aa13.12□□□□□ -0.31
CLN3-218ENST00000565688 BCAP31P51572 246 aa13.12□□□□□ -0.31
CLN3-218ENST00000565688 OPCMLQ14982 345 aa13.12□□□□□ -0.31
CLN3-218ENST00000565688 GUK1Q16774 197 aa13.12□□□□□ -0.31
CLN3-218ENST00000565688 CCDC28AQ8IWP9 274 aa13.12□□□□□ -0.31
CLN3-218ENST00000565688 ZNRF2Q8NHG8 242 aa13.12□□□□□ -0.31
CLN3-218ENST00000565688 NBDYA0A0U1RRE5 68 aa13.11□□□□□ -0.31
CLN3-218ENST00000565688 FAM25EA8MYX2 175 aa13.11□□□□□ -0.31
CLN3-218ENST00000565688 SLC17A3O00476 420 aa13.11□□□□□ -0.31
CLN3-218ENST00000565688 CCSO14618 274 aa13.11□□□□□ -0.31
CLN3-218ENST00000565688 LYRM1O43325 122 aa13.11□□□□□ -0.31
CLN3-218ENST00000565688 SNRPCP09234 159 aaKnown RBP13.11□□□□□ -0.31
CLN3-218ENST00000565688 PRB4P10163 310 aaPredicted RBP13.11□□□□□ -0.31
CLN3-218ENST00000565688 CAV2P51636 162 aa13.11□□□□□ -0.31
CLN3-218ENST00000565688 MORN5Q5VZ52 161 aa13.11□□□□□ -0.31
CLN3-218ENST00000565688 NRARPQ7Z6K4 114 aa13.11□□□□□ -0.31
CLN3-218ENST00000565688 OR1L4Q8NGR5 311 aa13.11□□□□□ -0.31
CLN3-218ENST00000565688 LSM5Q9Y4Y9 91 aaKnown RBP13.11□□□□□ -0.31
CLN3-218ENST00000565688 C5orf51A6NDU8 294 aa13.1□□□□□ -0.31
CLN3-218ENST00000565688 PLA2G10O15496 165 aa13.1□□□□□ -0.31
CLN3-218ENST00000565688 TCRBP04435 133 aa13.1□□□□□ -0.31
CLN3-218ENST00000565688 PVALBP20472 110 aaPredicted RBP13.1□□□□□ -0.31
CLN3-218ENST00000565688 CLINT1Q14677 625 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 43.5 ms