RNA–Protein interactions for RNA: ENST00000563798.1

VPS9D1-203, Transcript of VPS9 domain containing 1, humanhuman

TSL 3

Gene VPS9D1, Length 459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-203ENST00000563798 ARL6Q9H0F7 186 aa12.18□□□□□ -0.46
VPS9D1-203ENST00000563798 ARV1Q9H2C2 271 aa12.18□□□□□ -0.46
VPS9D1-203ENST00000563798 C7orf66A4D0T2 115 aa12.17□□□□□ -0.46
VPS9D1-203ENST00000563798 PLA2G10O15496 165 aa12.17□□□□□ -0.46
VPS9D1-203ENST00000563798 SLC38A11Q08AI6 406 aa12.17□□□□□ -0.46
VPS9D1-203ENST00000563798 TMEM256Q8N2U0 113 aa12.17□□□□□ -0.46
VPS9D1-203ENST00000563798 RYR1P21817 5038 aa12.16□□□□□ -0.46
VPS9D1-203ENST00000563798 PLAC8L1A1L4L8 177 aa12.16□□□□□ -0.46
VPS9D1-203ENST00000563798 ZNF705GA8MUZ8 300 aaPredicted RBP12.16□□□□□ -0.46
VPS9D1-203ENST00000563798 AGPAT2O15120 278 aa12.16□□□□□ -0.46
VPS9D1-203ENST00000563798 SCGB1D2O95969 90 aa12.16□□□□□ -0.46
VPS9D1-203ENST00000563798 BAP18Q8IXM2 172 aa12.16□□□□□ -0.46
VPS9D1-203ENST00000563798 C20orf85Q9H1P6 137 aa12.16□□□□□ -0.46
VPS9D1-203ENST00000563798 GSKIPQ9P0R6 139 aa12.16□□□□□ -0.46
VPS9D1-203ENST00000563798 GOSR2O14653 212 aa12.15□□□□□ -0.46
VPS9D1-203ENST00000563798 HTN3P15516 51 aa12.15□□□□□ -0.46
VPS9D1-203ENST00000563798 FAM3BP58499 235 aaPredicted RBP12.15□□□□□ -0.46
VPS9D1-203ENST00000563798 HIST1H1AQ02539 215 aaPredicted RBP12.15□□□□□ -0.46
VPS9D1-203ENST00000563798 TMEM88Q6PEY1 159 aa12.15□□□□□ -0.46
VPS9D1-203ENST00000563798 LCN15Q6UWW0 184 aa12.15□□□□□ -0.46
VPS9D1-203ENST00000563798 LINC00305Q7Z4B0 112 aa12.15□□□□□ -0.46
VPS9D1-203ENST00000563798 C15orf53Q8NAA6 179 aa12.15□□□□□ -0.46
VPS9D1-203ENST00000563798 ZNF331Q9NQX6 463 aaPredicted RBP12.15□□□□□ -0.46
VPS9D1-203ENST00000563798 PRSS29PA6NIE9 313 aa12.14□□□□□ -0.47
VPS9D1-203ENST00000563798 PRM2P04554 102 aa12.14□□□□□ -0.47
VPS9D1-203ENST00000563798 AZU1P20160 251 aa12.14□□□□□ -0.47
VPS9D1-203ENST00000563798 TAS2R60P59551 318 aa12.14□□□□□ -0.47
VPS9D1-203ENST00000563798 UBE2DNLQ8IWF7 75 aa12.14□□□□□ -0.47
VPS9D1-203ENST00000563798 TMEM37Q8WXS4 190 aa12.14□□□□□ -0.47
VPS9D1-203ENST00000563798 RPUSD4Q96CM3 377 aaKnown RBP12.14□□□□□ -0.47
VPS9D1-203ENST00000563798 MGST2Q99735 147 aa12.14□□□□□ -0.47
VPS9D1-203ENST00000563798 SLC50A1Q9BRV3 221 aa12.14□□□□□ -0.47
VPS9D1-203ENST00000563798 C11orf1Q9H5F2 150 aa12.14□□□□□ -0.47
VPS9D1-203ENST00000563798 TRAV12-2A0A075B6T6 113 aa12.13□□□□□ -0.47
VPS9D1-203ENST00000563798 M0R2N4 97 aa12.13□□□□□ -0.47
VPS9D1-203ENST00000563798 LYRM1O43325 122 aa12.13□□□□□ -0.47
VPS9D1-203ENST00000563798 TCRBP04435 133 aa12.13□□□□□ -0.47
VPS9D1-203ENST00000563798 RHOBP62745 196 aa12.13□□□□□ -0.47
VPS9D1-203ENST00000563798 BPIFA4PQ86YQ2 179 aa12.13□□□□□ -0.47
VPS9D1-203ENST00000563798 LRRC20Q8TCA0 184 aa12.13□□□□□ -0.47
VPS9D1-203ENST00000563798 C20orf144Q9BQM9 153 aa12.13□□□□□ -0.47
VPS9D1-203ENST00000563798 CDKN1BP46527 198 aa12.12□□□□□ -0.47
VPS9D1-203ENST00000563798 ZNF846Q147U1 533 aa12.12□□□□□ -0.47
VPS9D1-203ENST00000563798 ZNF493Q6ZR52 646 aa12.12□□□□□ -0.47
VPS9D1-203ENST00000563798 ZNF431Q8TF32 576 aaPredicted RBP12.12□□□□□ -0.47
VPS9D1-203ENST00000563798 LINC01587Q99440 93 aa12.12□□□□□ -0.47
VPS9D1-203ENST00000563798 NDUFA13Q9P0J0 144 aa12.12□□□□□ -0.47
VPS9D1-203ENST00000563798 CBY3A6NI87 242 aa12.11□□□□□ -0.47
VPS9D1-203ENST00000563798 L7N2F9 121 aa12.11□□□□□ -0.47
VPS9D1-203ENST00000563798 CCSO14618 274 aa12.11□□□□□ -0.47
VPS9D1-203ENST00000563798 COX7A2P2O60397 106 aa12.11□□□□□ -0.47
VPS9D1-203ENST00000563798 IGLC2P0DOY2 106 aa12.11□□□□□ -0.47
VPS9D1-203ENST00000563798 VAMP2P63027 116 aa12.11□□□□□ -0.47
VPS9D1-203ENST00000563798 VWC2Q2TAL6 325 aa12.11□□□□□ -0.47
VPS9D1-203ENST00000563798 SAT2Q96F10 170 aaPredicted RBP12.11□□□□□ -0.47
VPS9D1-203ENST00000563798 C16orf74Q96GX8 76 aa12.11□□□□□ -0.47
VPS9D1-203ENST00000563798 PPP1R14DQ9NXH3 145 aa12.11□□□□□ -0.47
VPS9D1-203ENST00000563798 PKHD1P08F94 4074 aa12.11□□□□□ -0.47
VPS9D1-203ENST00000563798 PKD1P98161 4303 aa12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 DNAH11Q96DT5 4516 aa12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 DEFB130BP0DP73 79 aa12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 DEFB130AP0DP74 79 aa12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 CAMLGP49069 296 aa12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 IL15RAQ13261 267 aa12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 RAB31Q13636 194 aa12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 OPCMLQ14982 345 aa12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 MORN5Q5VZ52 161 aa12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 C10orf113Q5VZT2 155 aa12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 RNASE8Q8TDE3 154 aaKnown RBP12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 CHAC2Q8WUX2 184 aa12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 C2orf50Q96LR7 162 aa12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 DNAJC4Q9NNZ3 241 aa12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 WDR83OSQ9Y284 106 aa12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 PXMP4Q9Y6I8 212 aa12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 DYNC1H1Q14204 4646 aaKnown RBP12.1□□□□□ -0.47
VPS9D1-203ENST00000563798 IGLV2-18A0A075B6J9 118 aa12.09□□□□□ -0.47
VPS9D1-203ENST00000563798 H7BYZ3 331 aa12.09□□□□□ -0.47
VPS9D1-203ENST00000563798 ATP5G1P05496 136 aa12.09□□□□□ -0.47
VPS9D1-203ENST00000563798 ATP5G3P48201 142 aa12.09□□□□□ -0.47
VPS9D1-203ENST00000563798 GUK1Q16774 197 aa12.09□□□□□ -0.47
VPS9D1-203ENST00000563798 Q6ZRG5 221 aa12.09□□□□□ -0.47
VPS9D1-203ENST00000563798 C12orf45Q8N5I9 185 aaPredicted RBP12.09□□□□□ -0.47
VPS9D1-203ENST00000563798 TMEM263Q8WUH6 116 aaKnown RBP12.09□□□□□ -0.47
VPS9D1-203ENST00000563798 CCDC32Q9BV29 185 aa12.09□□□□□ -0.47
VPS9D1-203ENST00000563798 NUDT15Q9NV35 164 aa12.09□□□□□ -0.47
VPS9D1-203ENST00000563798 LSM5Q9Y4Y9 91 aaKnown RBP12.09□□□□□ -0.47
VPS9D1-203ENST00000563798 TIMM8BQ9Y5J9 83 aaPredicted RBP12.09□□□□□ -0.47
VPS9D1-203ENST00000563798 NACAE9PAV3 2078 aa12.09□□□□□ -0.47
VPS9D1-203ENST00000563798 TRAV6A0A075B6T7 132 aa12.08□□□□□ -0.48
VPS9D1-203ENST00000563798 H3BQ15 152 aa12.08□□□□□ -0.48
VPS9D1-203ENST00000563798 SLC17A3O00476 420 aa12.08□□□□□ -0.48
VPS9D1-203ENST00000563798 ZNF253O75346 499 aa12.08□□□□□ -0.48
VPS9D1-203ENST00000563798 RPL29P47914 159 aaKnown RBP12.08□□□□□ -0.48
VPS9D1-203ENST00000563798 CAV2P51636 162 aa12.08□□□□□ -0.48
VPS9D1-203ENST00000563798 FCN2Q15485 313 aa12.08□□□□□ -0.48
VPS9D1-203ENST00000563798 SOHLH1Q5JUK2 328 aa12.08□□□□□ -0.48
VPS9D1-203ENST00000563798 LINC00299Q6ZSB3 139 aa12.08□□□□□ -0.48
VPS9D1-203ENST00000563798 NRARPQ7Z6K4 114 aa12.08□□□□□ -0.48
VPS9D1-203ENST00000563798 ODF3Q96PU9 254 aa12.08□□□□□ -0.48
VPS9D1-203ENST00000563798 SEC22CQ9BRL7 303 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms