RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 APRG1Q8IVJ8 170 aa6.93□□□□□ -1.3
LDLR-211ENST00000560173 DCANP1Q8TF63 244 aa6.93□□□□□ -1.3
LDLR-211ENST00000560173 MBD3L1Q8WWY6 194 aa6.93□□□□□ -1.3
LDLR-211ENST00000560173 RCHY1Q96PM5 261 aa6.93□□□□□ -1.3
LDLR-211ENST00000560173 MGST2Q99735 147 aa6.93□□□□□ -1.3
LDLR-211ENST00000560173 SPATA25Q9BR10 227 aa6.93□□□□□ -1.3
LDLR-211ENST00000560173 ZMAT4Q9H898 229 aa6.93□□□□□ -1.3
LDLR-211ENST00000560173 SLC39A9Q9NUM3 307 aa6.93□□□□□ -1.3
LDLR-211ENST00000560173 CTXND1A0A1B0GTU2 59 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 TMEM218A2RU14 115 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 AGPAT2O15120 278 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 ZNF688P0C7X2 276 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 ORM2P19652 201 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 DEFB131AP59861 70 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 GUK1Q16774 197 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 FFAR4Q5NUL3 377 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 SVBPQ8N300 66 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 OR1B1Q8NGR6 318 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 SFT2D1Q8WV19 159 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 WWC2-AS2Q96NR7 200 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 RSG1Q9BU20 258 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 SEC11CQ9BY50 192 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 EIF5A2Q9GZV4 153 aaKnown RBP6.92□□□□□ -1.3
LDLR-211ENST00000560173 RETNQ9HD89 108 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 NRN1Q9NPD7 142 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 DOK5Q9P104 306 aa6.92□□□□□ -1.3
LDLR-211ENST00000560173 KIR2DL5BA0A0G2JN68 375 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 KIR2DL5BA0A0G2JPC4 375 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 A0A1W2PPV4 95 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 ZNF98A6NK75 572 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 H3BRN7 92 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 HYPMO75409 117 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 RPL35AP18077 110 aaKnown RBP6.91□□□□□ -1.3
LDLR-211ENST00000560173 RPL29P47914 159 aaKnown RBP6.91□□□□□ -1.3
LDLR-211ENST00000560173 KHDC3LQ587J8 217 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 LEMD1Q68G75 181 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 OR8I2Q8N0Y5 310 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 KIR2DL5AQ8N109 375 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 OR10G4Q8NGN3 311 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 OR10G9Q8NGN4 311 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 OR10G7Q8NGN6 311 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 KIR2DL5BQ8NHK3 375 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 SUN5Q8TC36 379 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 SHANK2-AS3Q9BTD1 123 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 SCRT1Q9BWW7 348 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 SLC25A39Q9BZJ4 359 aaPredicted RBP6.91□□□□□ -1.3
LDLR-211ENST00000560173 SEPSECSQ9HD40 501 aaKnown RBP6.91□□□□□ -1.3
LDLR-211ENST00000560173 RPRMQ9NS64 109 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 PLA2G2EQ9NZK7 142 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 HIGD1AQ9Y241 93 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 RYR2Q92736 4967 aa6.91□□□□□ -1.3
LDLR-211ENST00000560173 DYNC2H1Q8NCM8 4307 aaKnown RBP6.9□□□□□ -1.3
LDLR-211ENST00000560173 MAP1LC3B2A6NCE7 125 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 RBFOX3A6NFN3 312 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 F8W036 122 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 SOCS3O14543 225 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 SNAPINO95295 136 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 OR5G3P0C626 314 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 S100A7P31151 101 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 PSMB3P49720 205 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 APOC4P55056 127 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 PSMG4Q5JS54 123 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 C10orf91Q5T1B1 145 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 PATE2Q6UY27 113 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 C17orf77Q96MU5 243 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 LINC00052Q96N35 136 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 TXNDC17Q9BRA2 123 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 MAP1LC3BQ9GZQ8 125 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 SLC35B3Q9H1N7 401 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 SLC25A22Q9H936 323 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 MANBALQ9NQG1 85 aa6.9□□□□□ -1.3
LDLR-211ENST00000560173 CARHSP1Q9Y2V2 147 aaKnown RBP6.9□□□□□ -1.3
LDLR-211ENST00000560173 UBE2CO00762 179 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 APOC3P02656 99 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 GALR1P47211 349 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 CDC34P49427 236 aaPredicted RBP6.89□□□□□ -1.31
LDLR-211ENST00000560173 FHITP49789 147 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 B2MP61769 119 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 SNRPD3P62318 126 aaKnown RBP6.89□□□□□ -1.31
LDLR-211ENST00000560173 RHOBP62745 196 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 PRR20EP86478 221 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 PRR20CP86479 221 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 PRR20DP86480 221 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 PRR20BP86481 221 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 PRR20AP86496 221 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 ZNF506Q5JVG8 444 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 MIC13Q5XKP0 118 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 S100A7AQ86SG5 101 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 GPR82Q96P67 336 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 UHRF2Q96PU4 802 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 PXMP4Q9Y6I8 212 aa6.89□□□□□ -1.31
LDLR-211ENST00000560173 AGRNO00468 2067 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 KNCNA6PVL3 124 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 ISLRO14498 428 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 COX7A2P2O60397 106 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 SFTA3P0C7M3 94 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 RPL7P18124 248 aaKnown RBP6.88□□□□□ -1.31
LDLR-211ENST00000560173 MEOX2P50222 304 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 TAS2R45P59539 299 aa6.88□□□□□ -1.31
LDLR-211ENST00000560173 SAMD13Q5VXD3 122 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 478 ms