RNA–Protein interactions for RNA: ENST00000559849.5

CHRNB4-204, Transcript of cholinergic receptor nicotinic beta 4 subunit, human

TSL 1 (best)

Gene CHRNB4, Length 2,080 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHRNB4-204	ENST00000559849	AGRN	O00468	2067 aa		10.1	□□□□□ -0.79
CHRNB4-204	ENST00000559849	UBE2C	O00762	179 aa		10.1	□□□□□ -0.79
CHRNB4-204	ENST00000559849	EWSR1	Q01844	656 aa	Known RBP eCLIP	10.1	□□□□□ -0.79
CHRNB4-204	ENST00000559849	LEMD1	Q68G75	181 aa		10.1	□□□□□ -0.79
CHRNB4-204	ENST00000559849	GPR82	Q96P67	336 aa		10.1	□□□□□ -0.79
CHRNB4-204	ENST00000559849	SLC25A39	Q9BZJ4	359 aa	Predicted RBP	10.1	□□□□□ -0.79
CHRNB4-204	ENST00000559849	RPL35A	P18077	110 aa	Known RBP	10.1	□□□□□ -0.79
CHRNB4-204	ENST00000559849	RPL12	P30050	165 aa	Known RBP	10.1	□□□□□ -0.79
CHRNB4-204	ENST00000559849	GALR1	P47211	349 aa		10.1	□□□□□ -0.79
CHRNB4-204	ENST00000559849	BAX	Q07812	192 aa		10.1	□□□□□ -0.79
CHRNB4-204	ENST00000559849	ALKAL2	Q6UX46	152 aa		10.1	□□□□□ -0.79
CHRNB4-204	ENST00000559849	OR5C1	Q8NGR4	320 aa		10.1	□□□□□ -0.79
CHRNB4-204	ENST00000559849	SHANK2-AS3	Q9BTD1	123 aa		10.1	□□□□□ -0.79
CHRNB4-204	ENST00000559849	RNF24	Q9Y225	148 aa		10.1	□□□□□ -0.79
CHRNB4-204	ENST00000559849		Q6ZRG5	221 aa		10.09	□□□□□ -0.79
CHRNB4-204	ENST00000559849	ZNF471	Q9BX82	626 aa	Predicted RBP	10.09	□□□□□ -0.79
CHRNB4-204	ENST00000559849	ARV1	Q9H2C2	271 aa		10.09	□□□□□ -0.79
CHRNB4-204	ENST00000559849	UBE2L5P	A0A1B0GUS4	154 aa		10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849		H3BRN7	92 aa		10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849	MPDU1	O75352	247 aa		10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849	ID1	P41134	155 aa		10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849	RNF212	Q495C1	297 aa		10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849	PSMG4	Q5JS54	123 aa		10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849	PATE2	Q6UY27	113 aa		10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849		Q6ZWC4	215 aa		10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849	STH	Q8IWL8	128 aa		10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849	SVBP	Q8N300	66 aa		10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849	ELOA3C	A0A087WX78	387 aa	Predicted RBP	10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849	SPP1	P10451	314 aa		10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849	RPL29	P47914	159 aa	Known RBP	10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849	SAMD13	Q5VXD3	122 aa		10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849	UHRF2	Q96PU4	802 aa		10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849	RSG1	Q9BU20	258 aa		10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849	SCRT1	Q9BWW7	348 aa		10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849	CSTL1	Q9H114	145 aa		10.08	□□□□□ -0.8
CHRNB4-204	ENST00000559849	RPL7	P18124	248 aa	Known RBP	10.07	□□□□□ -0.8
CHRNB4-204	ENST00000559849	PRR20E	P86478	221 aa		10.07	□□□□□ -0.8
CHRNB4-204	ENST00000559849	PRR20C	P86479	221 aa		10.07	□□□□□ -0.8
CHRNB4-204	ENST00000559849	PRR20D	P86480	221 aa		10.07	□□□□□ -0.8
CHRNB4-204	ENST00000559849	PRR20B	P86481	221 aa		10.07	□□□□□ -0.8
CHRNB4-204	ENST00000559849	PRR20A	P86496	221 aa		10.07	□□□□□ -0.8
CHRNB4-204	ENST00000559849	C10orf91	Q5T1B1	145 aa		10.07	□□□□□ -0.8
CHRNB4-204	ENST00000559849	RETN	Q9HD89	108 aa		10.07	□□□□□ -0.8
CHRNB4-204	ENST00000559849	COX7A2P2	O60397	106 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	MIC13	Q5XKP0	118 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	LINC00305	Q7Z4B0	112 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	TMEM37	Q8WXS4	190 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	DNAJC4	Q9NNZ3	241 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	CYTL1	Q9NRR1	136 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	TP53TG1	Q9Y2A0	90 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	ISLR	O14498	428 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	SOCS3	O14543	225 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	TAAR5	O14804	337 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	FGF7	P21781	194 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	PSMB3	P49720	205 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	RAB5B	P61020	215 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	CLINT1	Q14677	625 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	ACTL10	Q5JWF8	245 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	C10orf113	Q5VZT2	155 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	OVOL2	Q9BRP0	275 aa		10.06	□□□□□ -0.8
CHRNB4-204	ENST00000559849	OR1L4	Q8NGR5	311 aa		10.05	□□□□□ -0.8
CHRNB4-204	ENST00000559849	STOML3	Q8TAV4	291 aa		10.05	□□□□□ -0.8
CHRNB4-204	ENST00000559849	CARHSP1	Q9Y2V2	147 aa	Known RBP	10.05	□□□□□ -0.8
CHRNB4-204	ENST00000559849	TMEM218	A2RU14	115 aa		10.05	□□□□□ -0.8
CHRNB4-204	ENST00000559849	KNCN	A6PVL3	124 aa		10.05	□□□□□ -0.8
CHRNB4-204	ENST00000559849	SPRY2	O43597	315 aa		10.05	□□□□□ -0.8
CHRNB4-204	ENST00000559849	TPT1	P13693	172 aa	Known RBP	10.05	□□□□□ -0.8
CHRNB4-204	ENST00000559849	DEFB135	Q30KP9	77 aa		10.05	□□□□□ -0.8
CHRNB4-204	ENST00000559849	TRPT1	Q86TN4	253 aa	Known RBP	10.05	□□□□□ -0.8
CHRNB4-204	ENST00000559849	C16orf92	Q96LL3	132 aa		10.05	□□□□□ -0.8
CHRNB4-204	ENST00000559849	C17orf77	Q96MU5	243 aa		10.05	□□□□□ -0.8
CHRNB4-204	ENST00000559849	PFDN5	Q99471	154 aa		10.05	□□□□□ -0.8
CHRNB4-204	ENST00000559849	NPCDR1	Q9BY65	106 aa		10.05	□□□□□ -0.8
CHRNB4-204	ENST00000559849	SLC39A9	Q9NUM3	307 aa		10.05	□□□□□ -0.8
CHRNB4-204	ENST00000559849	PXMP4	Q9Y6I8	212 aa		10.05	□□□□□ -0.8
CHRNB4-204	ENST00000559849	RNF183	Q96D59	192 aa		10.04	□□□□□ -0.8
CHRNB4-204	ENST00000559849	SMIM3	Q9BZL3	60 aa		10.04	□□□□□ -0.8
CHRNB4-204	ENST00000559849	EDA2R	Q9HAV5	297 aa		10.04	□□□□□ -0.8
CHRNB4-204	ENST00000559849	C5orf52	A6NGY3	159 aa		10.03	□□□□□ -0.8
CHRNB4-204	ENST00000559849	FAM74A1	Q5RGS3	127 aa		10.03	□□□□□ -0.8
CHRNB4-204	ENST00000559849	TMEM88	Q6PEY1	159 aa		10.03	□□□□□ -0.8
CHRNB4-204	ENST00000559849	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		10.03	□□□□□ -0.8
CHRNB4-204	ENST00000559849	BPIFA4P	Q86YQ2	179 aa		10.03	□□□□□ -0.8
CHRNB4-204	ENST00000559849	BAP18	Q8IXM2	172 aa		10.03	□□□□□ -0.8
CHRNB4-204	ENST00000559849	ZNF709	Q8N972	641 aa		10.03	□□□□□ -0.8
CHRNB4-204	ENST00000559849	C2CD4C	Q8TF44	421 aa		10.03	□□□□□ -0.8
CHRNB4-204	ENST00000559849	ATP5S	Q99766	215 aa		10.03	□□□□□ -0.8
CHRNB4-204	ENST00000559849	WDR61	Q9GZS3	305 aa	Known RBP	10.03	□□□□□ -0.8
CHRNB4-204	ENST00000559849	CA1	P00915	261 aa	Predicted RBP	10.03	□□□□□ -0.8
CHRNB4-204	ENST00000559849	SNRPE	P62304	92 aa	Known RBP	10.03	□□□□□ -0.8
CHRNB4-204	ENST00000559849	RPL7L1	Q6DKI1	246 aa	Known RBP	10.03	□□□□□ -0.8
CHRNB4-204	ENST00000559849	MORN3	Q6PF18	240 aa	Predicted RBP	10.03	□□□□□ -0.8
CHRNB4-204	ENST00000559849	GATAD1	Q8WUU5	269 aa		10.03	□□□□□ -0.8
CHRNB4-204	ENST00000559849	RPRM	Q9NS64	109 aa		10.03	□□□□□ -0.8
CHRNB4-204	ENST00000559849		H3BMM0	161 aa		10.02	□□□□□ -0.81
CHRNB4-204	ENST00000559849	JTB	O76095	146 aa		10.02	□□□□□ -0.81
CHRNB4-204	ENST00000559849	EIF5A	P63241	154 aa	Known RBP	10.02	□□□□□ -0.81
CHRNB4-204	ENST00000559849	TMEM41B	Q5BJD5	291 aa		10.02	□□□□□ -0.81
CHRNB4-204	ENST00000559849	KCNIP2	Q9NS61	270 aa		10.02	□□□□□ -0.81
CHRNB4-204	ENST00000559849		A0A087X0K7	114 aa		10.02	□□□□□ -0.81

Retrieved 100 of 20,778 RNA–protein pairs in 68.3 ms