RNA–Protein interactions for RNA: ENST00000532560.5

CPSF1-208, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 3

Gene CPSF1, Length 701 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-208ENST00000532560 SMCO4Q9NRQ5 59 aa11.11□□□□□ -0.63
CPSF1-208ENST00000532560 ZNF98A6NK75 572 aa11.1□□□□□ -0.63
CPSF1-208ENST00000532560 H3BRN7 92 aa11.1□□□□□ -0.63
CPSF1-208ENST00000532560 UBE2CO00762 179 aa11.1□□□□□ -0.63
CPSF1-208ENST00000532560 AGPAT2O15120 278 aa11.1□□□□□ -0.63
CPSF1-208ENST00000532560 ZNF688P0C7X2 276 aa11.1□□□□□ -0.63
CPSF1-208ENST00000532560 SRSF3P84103 164 aaKnown RBP11.1□□□□□ -0.63
CPSF1-208ENST00000532560 NHLH2Q02577 135 aa11.1□□□□□ -0.63
CPSF1-208ENST00000532560 LEMD1Q68G75 181 aa11.1□□□□□ -0.63
CPSF1-208ENST00000532560 OR8I2Q8N0Y5 310 aa11.1□□□□□ -0.63
CPSF1-208ENST00000532560 GPR82Q96P67 336 aa11.1□□□□□ -0.63
CPSF1-208ENST00000532560 MGST2Q99735 147 aa11.1□□□□□ -0.63
CPSF1-208ENST00000532560 ATP5SQ99766 215 aa11.1□□□□□ -0.63
CPSF1-208ENST00000532560 PARD6GQ9BYG4 376 aaPredicted RBP11.1□□□□□ -0.63
CPSF1-208ENST00000532560 PLA2G2EQ9NZK7 142 aa11.1□□□□□ -0.63
CPSF1-208ENST00000532560 HIGD1AQ9Y241 93 aa11.1□□□□□ -0.63
CPSF1-208ENST00000532560 NBEAL2Q6ZNJ1 2754 aa11.1□□□□□ -0.63
CPSF1-208ENST00000532560 HYPMO75409 117 aa11.09□□□□□ -0.63
CPSF1-208ENST00000532560 IFNA5P01569 189 aa11.09□□□□□ -0.63
CPSF1-208ENST00000532560 RPL35AP18077 110 aaKnown RBP11.09□□□□□ -0.63
CPSF1-208ENST00000532560 SNRPD3P62318 126 aaKnown RBP11.09□□□□□ -0.63
CPSF1-208ENST00000532560 RAB31Q13636 194 aa11.09□□□□□ -0.63
CPSF1-208ENST00000532560 ATP6V1FQ16864 119 aa11.09□□□□□ -0.63
CPSF1-208ENST00000532560 Q6ZWC4 215 aa11.09□□□□□ -0.63
CPSF1-208ENST00000532560 C15orf54Q8N8G6 183 aa11.09□□□□□ -0.63
CPSF1-208ENST00000532560 OR2G3Q8NGZ4 309 aa11.09□□□□□ -0.63
CPSF1-208ENST00000532560 SHANK2-AS3Q9BTD1 123 aa11.09□□□□□ -0.63
CPSF1-208ENST00000532560 SLC25A39Q9BZJ4 359 aaPredicted RBP11.09□□□□□ -0.63
CPSF1-208ENST00000532560 SLC35B3Q9H1N7 401 aa11.09□□□□□ -0.63
CPSF1-208ENST00000532560 DOK5Q9P104 306 aa11.09□□□□□ -0.63
CPSF1-208ENST00000532560 WDR83OSQ9Y284 106 aa11.09□□□□□ -0.63
CPSF1-208ENST00000532560 UBE2L5PA0A1B0GUS4 154 aa11.08□□□□□ -0.64
CPSF1-208ENST00000532560 OR5G3P0C626 314 aa11.08□□□□□ -0.64
CPSF1-208ENST00000532560 ATP6V0CP27449 155 aa11.08□□□□□ -0.64
CPSF1-208ENST00000532560 GALR1P47211 349 aa11.08□□□□□ -0.64
CPSF1-208ENST00000532560 RHEBQ15382 184 aa11.08□□□□□ -0.64
CPSF1-208ENST00000532560 PSMG4Q5JS54 123 aa11.08□□□□□ -0.64
CPSF1-208ENST00000532560 SAMD13Q5VXD3 122 aa11.08□□□□□ -0.64
CPSF1-208ENST00000532560 S100A7AQ86SG5 101 aa11.08□□□□□ -0.64
CPSF1-208ENST00000532560 HSD17B11Q8NBQ5 300 aa11.08□□□□□ -0.64
CPSF1-208ENST00000532560 OR5C1Q8NGR4 320 aa11.08□□□□□ -0.64
CPSF1-208ENST00000532560 PSMG3Q9BT73 122 aaPredicted RBP11.08□□□□□ -0.64
CPSF1-208ENST00000532560 SCRT1Q9BWW7 348 aa11.08□□□□□ -0.64
CPSF1-208ENST00000532560 SLC25A22Q9H936 323 aa11.08□□□□□ -0.64
CPSF1-208ENST00000532560 TP53TG1Q9Y2A0 90 aa11.08□□□□□ -0.64
CPSF1-208ENST00000532560 TRAV1-1A0A0B4J248 108 aa11.07□□□□□ -0.64
CPSF1-208ENST00000532560 SOCS3O14543 225 aa11.07□□□□□ -0.64
CPSF1-208ENST00000532560 PSMB3P49720 205 aa11.07□□□□□ -0.64
CPSF1-208ENST00000532560 MEOX2P50222 304 aa11.07□□□□□ -0.64
CPSF1-208ENST00000532560 AKR1C8PQ5T2L2 129 aa11.07□□□□□ -0.64
CPSF1-208ENST00000532560 STHQ8IWL8 128 aa11.07□□□□□ -0.64
CPSF1-208ENST00000532560 FAM213BQ8TBF2 198 aa11.07□□□□□ -0.64
CPSF1-208ENST00000532560 OVOL2Q9BRP0 275 aa11.07□□□□□ -0.64
CPSF1-208ENST00000532560 EIF5A2Q9GZV4 153 aaKnown RBP11.07□□□□□ -0.64
CPSF1-208ENST00000532560 EDA2RQ9HAV5 297 aa11.07□□□□□ -0.64
CPSF1-208ENST00000532560 ID1P41134 155 aa11.06□□□□□ -0.64
CPSF1-208ENST00000532560 CLINT1Q14677 625 aa11.06□□□□□ -0.64
CPSF1-208ENST00000532560 RNF212Q495C1 297 aa11.06□□□□□ -0.64
CPSF1-208ENST00000532560 PATE2Q6UY27 113 aa11.06□□□□□ -0.64
CPSF1-208ENST00000532560 TRPT1Q86TN4 253 aaKnown RBP11.06□□□□□ -0.64
CPSF1-208ENST00000532560 SCGB1C1Q8TD33 95 aa11.06□□□□□ -0.64
CPSF1-208ENST00000532560 UHRF2Q96PU4 802 aa11.06□□□□□ -0.64
CPSF1-208ENST00000532560 CSTL1Q9H114 145 aa11.06□□□□□ -0.64
CPSF1-208ENST00000532560 RNF24Q9Y225 148 aa11.06□□□□□ -0.64
CPSF1-208ENST00000532560 KNCNA6PVL3 124 aa11.05□□□□□ -0.64
CPSF1-208ENST00000532560 ISLRO14498 428 aa11.05□□□□□ -0.64
CPSF1-208ENST00000532560 MPDU1O75352 247 aa11.05□□□□□ -0.64
CPSF1-208ENST00000532560 NDUFS6O75380 124 aaKnown RBP11.05□□□□□ -0.64
CPSF1-208ENST00000532560 RPL7P18124 248 aaKnown RBP11.05□□□□□ -0.64
CPSF1-208ENST00000532560 FGF7P21781 194 aa11.05□□□□□ -0.64
CPSF1-208ENST00000532560 PPT1P50897 306 aa11.05□□□□□ -0.64
CPSF1-208ENST00000532560 SERF2P84101 59 aa11.05□□□□□ -0.64
CPSF1-208ENST00000532560 PRR20EP86478 221 aa11.05□□□□□ -0.64
CPSF1-208ENST00000532560 PRR20CP86479 221 aa11.05□□□□□ -0.64
CPSF1-208ENST00000532560 PRR20DP86480 221 aa11.05□□□□□ -0.64
CPSF1-208ENST00000532560 PRR20BP86481 221 aa11.05□□□□□ -0.64
CPSF1-208ENST00000532560 PRR20AP86496 221 aa11.05□□□□□ -0.64
CPSF1-208ENST00000532560 DEFB135Q30KP9 77 aa11.05□□□□□ -0.64
CPSF1-208ENST00000532560 MIC13Q5XKP0 118 aa11.05□□□□□ -0.64
CPSF1-208ENST00000532560 OR10G4Q8NGN3 311 aa11.05□□□□□ -0.64
CPSF1-208ENST00000532560 C17orf77Q96MU5 243 aa11.05□□□□□ -0.64
CPSF1-208ENST00000532560 SH3BGRL3Q9H299 93 aa11.05□□□□□ -0.64
CPSF1-208ENST00000532560 ELOA3CA0A087WX78 387 aaPredicted RBP11.04□□□□□ -0.64
CPSF1-208ENST00000532560 SPRY2O43597 315 aa11.04□□□□□ -0.64
CPSF1-208ENST00000532560 COX7A2P2O60397 106 aa11.04□□□□□ -0.64
CPSF1-208ENST00000532560 RPL29P47914 159 aaKnown RBP11.04□□□□□ -0.64
CPSF1-208ENST00000532560 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa11.04□□□□□ -0.64
CPSF1-208ENST00000532560 RNF183Q96D59 192 aa11.04□□□□□ -0.64
CPSF1-208ENST00000532560 RSG1Q9BU20 258 aa11.04□□□□□ -0.64
CPSF1-208ENST00000532560 BIN3Q9NQY0 253 aa11.04□□□□□ -0.64
CPSF1-208ENST00000532560 TIMM9Q9Y5J7 89 aa11.04□□□□□ -0.64
CPSF1-208ENST00000532560 A0A087X0K7 114 aa11.03□□□□□ -0.64
CPSF1-208ENST00000532560 RBFOX3A6NFN3 312 aa11.03□□□□□ -0.64
CPSF1-208ENST00000532560 CA1P00915 261 aaPredicted RBP11.03□□□□□ -0.64
CPSF1-208ENST00000532560 MT-ND4LP03901 98 aa11.03□□□□□ -0.64
CPSF1-208ENST00000532560 TAGLN2P37802 199 aaKnown RBP11.03□□□□□ -0.64
CPSF1-208ENST00000532560 B2MP61769 119 aa11.03□□□□□ -0.64
CPSF1-208ENST00000532560 PMS2P11Q13670 270 aa11.03□□□□□ -0.64
CPSF1-208ENST00000532560 ACTL10Q5JWF8 245 aa11.03□□□□□ -0.64
CPSF1-208ENST00000532560 C10orf113Q5VZT2 155 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 83.3 ms