RNA–Protein interactions for RNA: ENST00000529182.5

VPS28-210, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 2 BASIC

Gene VPS28, Length 1,010 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-210ENST00000529182 OR4B1Q8NGF8 309 aa9.77□□□□□ -0.85
VPS28-210ENST00000529182 LRRC20Q8TCA0 184 aa9.77□□□□□ -0.85
VPS28-210ENST00000529182 RPRMQ9NS64 109 aa9.77□□□□□ -0.85
VPS28-210ENST00000529182 CLEC5AQ9NY25 188 aa9.77□□□□□ -0.85
VPS28-210ENST00000529182 STARD9Q9P2P6 4700 aa9.77□□□□□ -0.85
VPS28-210ENST00000529182 A0A0J9YX75 114 aa9.76□□□□□ -0.85
VPS28-210ENST00000529182 A0A1B0GVG6 124 aa9.76□□□□□ -0.85
VPS28-210ENST00000529182 ZNF705DP0CH99 300 aaPredicted RBP9.76□□□□□ -0.85
VPS28-210ENST00000529182 ZNF705BP0CI00 300 aaPredicted RBP9.76□□□□□ -0.85
VPS28-210ENST00000529182 PYYP10082 97 aa9.76□□□□□ -0.85
VPS28-210ENST00000529182 SPP1P10451 314 aa9.76□□□□□ -0.85
VPS28-210ENST00000529182 FXYD7P58549 80 aa9.76□□□□□ -0.85
VPS28-210ENST00000529182 FFAR4Q5NUL3 377 aa9.76□□□□□ -0.85
VPS28-210ENST00000529182 MORN3Q6PF18 240 aaPredicted RBP9.76□□□□□ -0.85
VPS28-210ENST00000529182 SLC25A2Q9BXI2 301 aa9.76□□□□□ -0.85
VPS28-210ENST00000529182 PARD6GQ9BYG4 376 aaPredicted RBP9.76□□□□□ -0.85
VPS28-210ENST00000529182 KCNIP2Q9NS61 270 aa9.76□□□□□ -0.85
VPS28-210ENST00000529182 TNFSF18Q9UNG2 199 aa9.76□□□□□ -0.85
VPS28-210ENST00000529182 EIF3GO75821 320 aaKnown RBP eCLIP9.75□□□□□ -0.85
VPS28-210ENST00000529182 EBLN2Q6P2I7 272 aa9.75□□□□□ -0.85
VPS28-210ENST00000529182 LCN15Q6UWW0 184 aa9.75□□□□□ -0.85
VPS28-210ENST00000529182 HSD17B11Q8NBQ5 300 aa9.75□□□□□ -0.85
VPS28-210ENST00000529182 INO80EQ8NBZ0 244 aaPredicted RBP9.75□□□□□ -0.85
VPS28-210ENST00000529182 ZNF738Q8NE65 137 aa9.75□□□□□ -0.85
VPS28-210ENST00000529182 FAM167A-AS1Q96KT0 104 aa9.75□□□□□ -0.85
VPS28-210ENST00000529182 HRH4Q9H3N8 390 aa9.75□□□□□ -0.85
VPS28-210ENST00000529182 ZNF331Q9NQX6 463 aaPredicted RBP9.75□□□□□ -0.85
VPS28-210ENST00000529182 ZNF586Q9NXT0 402 aa9.75□□□□□ -0.85
VPS28-210ENST00000529182 CSMD3Q7Z407 3707 aa9.74□□□□□ -0.85
VPS28-210ENST00000529182 A0A0J9YWU9 116 aa9.74□□□□□ -0.85
VPS28-210ENST00000529182 ZNF705FA8MVS1 300 aaPredicted RBP9.74□□□□□ -0.85
VPS28-210ENST00000529182 CXCL2P19875 107 aa9.74□□□□□ -0.85
VPS28-210ENST00000529182 PSG3Q16557 428 aa9.74□□□□□ -0.85
VPS28-210ENST00000529182 OR11H2Q8NH07 326 aa9.74□□□□□ -0.85
VPS28-210ENST00000529182 SAT2Q96F10 170 aaPredicted RBP9.74□□□□□ -0.85
VPS28-210ENST00000529182 RARRES2Q99969 163 aa9.74□□□□□ -0.85
VPS28-210ENST00000529182 TMEM14CQ9P0S9 112 aa9.74□□□□□ -0.85
VPS28-210ENST00000529182 XCL2Q9UBD3 114 aa9.74□□□□□ -0.85
VPS28-210ENST00000529182 FUT9Q9Y231 359 aa9.74□□□□□ -0.85
VPS28-210ENST00000529182 ARPC5O15511 151 aa9.73□□□□□ -0.85
VPS28-210ENST00000529182 CNN1P51911 297 aaKnown RBP9.73□□□□□ -0.85
VPS28-210ENST00000529182 ZNF266Q14584 549 aa9.73□□□□□ -0.85
VPS28-210ENST00000529182 CSNK1G2-AS1Q8NCQ2 148 aa9.73□□□□□ -0.85
VPS28-210ENST00000529182 MUC7Q8TAX7 377 aa9.73□□□□□ -0.85
VPS28-210ENST00000529182 BLNKQ8WV28 456 aa9.73□□□□□ -0.85
VPS28-210ENST00000529182 SLC50A1Q9BRV3 221 aa9.73□□□□□ -0.85
VPS28-210ENST00000529182 MRPL32Q9BYC8 188 aaKnown RBP9.73□□□□□ -0.85
VPS28-210ENST00000529182 SLC35B3Q9H1N7 401 aa9.73□□□□□ -0.85
VPS28-210ENST00000529182 KMT2CQ8NEZ4 4911 aaKnown RBP9.72□□□□□ -0.85
VPS28-210ENST00000529182 TRBV19A0A075B6N1 114 aa9.72□□□□□ -0.85
VPS28-210ENST00000529182 OR10J4P0C629 311 aa9.72□□□□□ -0.85
VPS28-210ENST00000529182 HIST1H1EP10412 219 aaKnown RBP9.72□□□□□ -0.85
VPS28-210ENST00000529182 ATP6V0CP27449 155 aa9.72□□□□□ -0.85
VPS28-210ENST00000529182 RAB2AP61019 212 aa9.72□□□□□ -0.85
VPS28-210ENST00000529182 NUTF2P61970 127 aaKnown RBP9.72□□□□□ -0.85
VPS28-210ENST00000529182 PSG9Q00887 426 aa9.72□□□□□ -0.85
VPS28-210ENST00000529182 HIST1H1AQ02539 215 aaPredicted RBP9.72□□□□□ -0.85
VPS28-210ENST00000529182 RPL7L1Q6DKI1 246 aaKnown RBP9.72□□□□□ -0.85
VPS28-210ENST00000529182 OR11H4Q8NGC9 324 aa9.72□□□□□ -0.85
VPS28-210ENST00000529182 RPUSD4Q96CM3 377 aaKnown RBP9.72□□□□□ -0.85
VPS28-210ENST00000529182 MFFQ9GZY8 342 aa9.72□□□□□ -0.85
VPS28-210ENST00000529182 SH3BGRL3Q9H299 93 aa9.72□□□□□ -0.85
VPS28-210ENST00000529182 OR51M1Q9H341 326 aa9.72□□□□□ -0.85
VPS28-210ENST00000529182 TIMM9Q9Y5J7 89 aa9.72□□□□□ -0.85
VPS28-210ENST00000529182 PRAC2D3DTV9 90 aa9.71□□□□□ -0.86
VPS28-210ENST00000529182 DEFB4AO15263 64 aa9.71□□□□□ -0.86
VPS28-210ENST00000529182 NDUFB4O95168 129 aa9.71□□□□□ -0.86
VPS28-210ENST00000529182 GUK1Q16774 197 aa9.71□□□□□ -0.86
VPS28-210ENST00000529182 TMEM41BQ5BJD5 291 aa9.71□□□□□ -0.86
VPS28-210ENST00000529182 ZFAND6Q6FIF0 208 aa9.71□□□□□ -0.86
VPS28-210ENST00000529182 AMTNQ6UX39 209 aa9.71□□□□□ -0.86
VPS28-210ENST00000529182 OR8A1Q8NGG7 326 aa9.71□□□□□ -0.86
VPS28-210ENST00000529182 ZNF503Q96F45 646 aa9.71□□□□□ -0.86
VPS28-210ENST00000529182 CLUHP3Q96NS8 147 aa9.71□□□□□ -0.86
VPS28-210ENST00000529182 PAXXQ9BUH6 204 aa9.71□□□□□ -0.86
VPS28-210ENST00000529182 A8MTW9 85 aa9.7□□□□□ -0.86
VPS28-210ENST00000529182 OR7C2O60412 319 aa9.7□□□□□ -0.86
VPS28-210ENST00000529182 DUSP14O95147 198 aaKnown RBP9.7□□□□□ -0.86
VPS28-210ENST00000529182 M6PRP20645 277 aa9.7□□□□□ -0.86
VPS28-210ENST00000529182 RHOBP62745 196 aa9.7□□□□□ -0.86
VPS28-210ENST00000529182 ACOT6Q3I5F7 207 aaPredicted RBP9.7□□□□□ -0.86
VPS28-210ENST00000529182 FAM122CQ6P4D5 195 aa9.7□□□□□ -0.86
VPS28-210ENST00000529182 FXYD5Q96DB9 178 aa9.7□□□□□ -0.86
VPS28-210ENST00000529182 C1QTNF4Q9BXJ3 329 aa9.7□□□□□ -0.86
VPS28-210ENST00000529182 X6R8D5 127 aa9.7□□□□□ -0.86
VPS28-210ENST00000529182 ZNF705EA8MWA4 302 aaPredicted RBP9.69□□□□□ -0.86
VPS28-210ENST00000529182 C3orf84H3BNL1 204 aa9.69□□□□□ -0.86
VPS28-210ENST00000529182 M0R2Z0 102 aa9.69□□□□□ -0.86
VPS28-210ENST00000529182 M0R3E3 92 aa9.69□□□□□ -0.86
VPS28-210ENST00000529182 HMGB3O15347 200 aaKnown RBP9.69□□□□□ -0.86
VPS28-210ENST00000529182 ZNF253O75346 499 aa9.69□□□□□ -0.86
VPS28-210ENST00000529182 NBEAP1P0C6P0 100 aa9.69□□□□□ -0.86
VPS28-210ENST00000529182 SPINK13Q1W4C9 94 aa9.69□□□□□ -0.86
VPS28-210ENST00000529182 EXOC3-AS1Q8N2X6 119 aa9.69□□□□□ -0.86
VPS28-210ENST00000529182 OR10G4Q8NGN3 311 aa9.69□□□□□ -0.86
VPS28-210ENST00000529182 OR10G9Q8NGN4 311 aa9.69□□□□□ -0.86
VPS28-210ENST00000529182 OR10G7Q8NGN6 311 aa9.69□□□□□ -0.86
VPS28-210ENST00000529182 RNF141Q8WVD5 230 aa9.69□□□□□ -0.86
VPS28-210ENST00000529182 PHYHIPLQ96FC7 376 aa9.69□□□□□ -0.86
VPS28-210ENST00000529182 PSMG3Q9BT73 122 aaPredicted RBP9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 66.7 ms