RNA–Protein interactions for RNA: ENST00000510852.1

USP53-207, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 2

Gene USP53, Length 2,437 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-207ENST00000510852 IGHG2P01859 326 aa7.55□□□□□ -1.2
USP53-207ENST00000510852 EIF4EP06730 217 aaKnown RBP7.55□□□□□ -1.2
USP53-207ENST00000510852 CD55P08174 381 aa7.55□□□□□ -1.2
USP53-207ENST00000510852 ELK1P19419 428 aa7.55□□□□□ -1.2
USP53-207ENST00000510852 CACNG7P62955 275 aa7.55□□□□□ -1.2
USP53-207ENST00000510852 HLA-DRB3P79483 266 aa7.55□□□□□ -1.2
USP53-207ENST00000510852 CCL8P80075 99 aa7.55□□□□□ -1.2
USP53-207ENST00000510852 UBE2NLQ5JXB2 153 aa7.55□□□□□ -1.2
USP53-207ENST00000510852 C11orf71Q6IPW1 123 aa7.55□□□□□ -1.2
USP53-207ENST00000510852 ZNF826PQ6ZT77 177 aa7.55□□□□□ -1.2
USP53-207ENST00000510852 OR4C16Q8NGL9 310 aa7.55□□□□□ -1.2
USP53-207ENST00000510852 BANF2Q9H503 90 aa7.55□□□□□ -1.2
USP53-207ENST00000510852 Q9HAA7 133 aa7.55□□□□□ -1.2
USP53-207ENST00000510852 FUT9Q9Y231 359 aa7.55□□□□□ -1.2
USP53-207ENST00000510852 NBPF19A0A087WUL8 3843 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 A0A087WZ39 114 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 TAX1BP3O14907 124 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 HLA-DRB1P01911 266 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 MYCNOSP40205 109 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 PAX8Q06710 450 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 KLRD1Q13241 179 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 Q6ZUT4 128 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 Q6ZVQ6 151 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 CST11Q9H112 138 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 PLEKHF2Q9H8W4 249 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 RPRMQ9NS64 109 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 CRYBG3Q68DQ2 2970 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 IGKV1D-8A0A087WSZ0 117 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 IFITM1P13164 125 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 RBMXP38159 391 aaKnown RBP7.54□□□□□ -1.2
USP53-207ENST00000510852 HERVK_113P63121 156 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 MAPKAPK5-AS1Q8N8E1 139 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 UQCR10Q9UDW1 63 aa7.54□□□□□ -1.2
USP53-207ENST00000510852 YPEL4Q96NS1 127 aa7.53□□□□□ -1.2
USP53-207ENST00000510852 GCN1Q92616 2671 aaKnown RBP7.53□□□□□ -1.2
USP53-207ENST00000510852 HRASP01112 189 aa7.53□□□□□ -1.2
USP53-207ENST00000510852 KRASP01116 189 aa7.53□□□□□ -1.2
USP53-207ENST00000510852 HOXA4Q00056 320 aaPredicted RBP7.53□□□□□ -1.2
USP53-207ENST00000510852 HEPN1Q6WQI6 88 aa7.53□□□□□ -1.2
USP53-207ENST00000510852 ZNF493Q6ZR52 646 aa7.53□□□□□ -1.2
USP53-207ENST00000510852 LRRC29Q8WV35 223 aa7.53□□□□□ -1.2
USP53-207ENST00000510852 S100A16Q96FQ6 103 aaKnown RBP7.53□□□□□ -1.2
USP53-207ENST00000510852 LINC00312Q9Y6C7 94 aa7.53□□□□□ -1.2
USP53-207ENST00000510852 PXMP4Q9Y6I8 212 aa7.53□□□□□ -1.2
USP53-207ENST00000510852 MT-ATP8P03928 68 aa7.52□□□□□ -1.2
USP53-207ENST00000510852 HNRNPA3P51991 378 aaKnown RBP7.52□□□□□ -1.2
USP53-207ENST00000510852 FGF12P61328 243 aa7.52□□□□□ -1.2
USP53-207ENST00000510852 COL10A1Q03692 680 aa7.52□□□□□ -1.2
USP53-207ENST00000510852 PIGYQ3MUY2 71 aa7.52□□□□□ -1.2
USP53-207ENST00000510852 LCE2DQ5TA82 110 aaPredicted RBP7.52□□□□□ -1.2
USP53-207ENST00000510852 Q8IYB0 196 aa7.52□□□□□ -1.2
USP53-207ENST00000510852 MBD6Q96DN6 1003 aa7.52□□□□□ -1.2
USP53-207ENST00000510852 METTL26Q96S19 204 aa7.52□□□□□ -1.2
USP53-207ENST00000510852 IL36RNQ9UBH0 155 aa7.52□□□□□ -1.2
USP53-207ENST00000510852 AMMECR1Q9Y4X0 333 aaPredicted RBP7.52□□□□□ -1.2
USP53-207ENST00000510852 ARFGEF3Q5TH69 2177 aa7.52□□□□□ -1.21
USP53-207ENST00000510852 CACNA1DQ01668 2161 aa7.52□□□□□ -1.21
USP53-207ENST00000510852 TRAV4A0A0B4J268 109 aa7.52□□□□□ -1.21
USP53-207ENST00000510852 WNT9BO14905 357 aa7.52□□□□□ -1.21
USP53-207ENST00000510852 TEX43Q6ZNM6 134 aa7.52□□□□□ -1.21
USP53-207ENST00000510852 KCNRGQ8N5I3 272 aa7.52□□□□□ -1.21
USP53-207ENST00000510852 SLC25A21Q9BQT8 299 aaPredicted RBP7.52□□□□□ -1.21
USP53-207ENST00000510852 V9GYH0 126 aa7.52□□□□□ -1.21
USP53-207ENST00000510852 DOPEY2Q9Y3R5 2298 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 IGLC7A0M8Q6 106 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 GEMIN2O14893 280 aaKnown RBP7.51□□□□□ -1.21
USP53-207ENST00000510852 LHBP01229 141 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 SRP14P37108 136 aaKnown RBP7.51□□□□□ -1.21
USP53-207ENST00000510852 HERV-K104P61576 105 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 CENPWQ5EE01 88 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 OTORQ9NRC9 128 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 TACC2O95359 2948 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 CELSR2Q9HCU4 2923 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 A6NDN8 102 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 OR2T8A6NH00 312 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 SRRM5B3KS81 715 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 SOCS1O15524 211 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 PDCD6O75340 191 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 NSUN5P1Q3KNT7 163 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 TTC32Q5I0X7 151 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 Q6Q795 121 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 ACP7Q6ZNF0 438 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 ATP5L2Q7Z4Y8 100 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 CCL17Q92583 94 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 SSBP3Q9BWW4 388 aaPredicted RBP7.51□□□□□ -1.21
USP53-207ENST00000510852 ZNF581Q9P0T4 197 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 FBN2P35556 2912 aa7.51□□□□□ -1.21
USP53-207ENST00000510852 FASNP49327 2511 aaKnown RBP7.51□□□□□ -1.21
USP53-207ENST00000510852 RAI1Q7Z5J4 1906 aaPredicted RBP7.5□□□□□ -1.21
USP53-207ENST00000510852 HES1Q14469 280 aa7.5□□□□□ -1.21
USP53-207ENST00000510852 C3orf22Q8N5N4 141 aa7.5□□□□□ -1.21
USP53-207ENST00000510852 IGFBPL1Q8WX77 278 aa7.5□□□□□ -1.21
USP53-207ENST00000510852 CCL19Q99731 98 aa7.5□□□□□ -1.21
USP53-207ENST00000510852 TMEM106BQ9NUM4 274 aa7.5□□□□□ -1.21
USP53-207ENST00000510852 MEIS3P1A6NDR6 274 aa7.5□□□□□ -1.21
USP53-207ENST00000510852 LYNX1G3V0Z9 82 aa7.5□□□□□ -1.21
USP53-207ENST00000510852 GSTZ1O43708 216 aaPredicted RBP7.5□□□□□ -1.21
USP53-207ENST00000510852 LY6HO94772 140 aa7.5□□□□□ -1.21
USP53-207ENST00000510852 AVPP01185 164 aa7.5□□□□□ -1.21
USP53-207ENST00000510852 LYNX1P0DP58 116 aa7.5□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms