RNA–Protein interactions for RNA: ENST00000509601.1

TPM3-220, Transcript of tropomyosin 3, humanhuman

TSL 4

Gene TPM3, Length 543 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM3-220ENST00000509601 FAM222AQ5U5X8 452 aa12.78□□□□□ -0.36
TPM3-220ENST00000509601 S100A7AQ86SG5 101 aa12.78□□□□□ -0.36
TPM3-220ENST00000509601 ZNF546Q86UE3 836 aa12.78□□□□□ -0.36
TPM3-220ENST00000509601 M0R2Z0 102 aa12.77□□□□□ -0.37
TPM3-220ENST00000509601 HBE1P02100 147 aa12.77□□□□□ -0.37
TPM3-220ENST00000509601 AMBPP02760 352 aa12.77□□□□□ -0.37
TPM3-220ENST00000509601 SNRPCP09234 159 aaKnown RBP12.77□□□□□ -0.37
TPM3-220ENST00000509601 PRB4P10163 310 aaPredicted RBP12.77□□□□□ -0.37
TPM3-220ENST00000509601 CAV2P51636 162 aa12.77□□□□□ -0.37
TPM3-220ENST00000509601 SPINK13Q1W4C9 94 aa12.77□□□□□ -0.37
TPM3-220ENST00000509601 MORN5Q5VZ52 161 aa12.77□□□□□ -0.37
TPM3-220ENST00000509601 ZNF738Q8NE65 137 aa12.77□□□□□ -0.37
TPM3-220ENST00000509601 OR8A1Q8NGG7 326 aa12.77□□□□□ -0.37
TPM3-220ENST00000509601 S100ZQ8WXG8 99 aa12.77□□□□□ -0.37
TPM3-220ENST00000509601 HECTD4Q9Y4D8 3996 aa12.76□□□□□ -0.37
TPM3-220ENST00000509601 LOC102723971A0A1B0GUV8 181 aa12.76□□□□□ -0.37
TPM3-220ENST00000509601 CAMLGP49069 296 aa12.76□□□□□ -0.37
TPM3-220ENST00000509601 IFITM3Q01628 133 aa12.76□□□□□ -0.37
TPM3-220ENST00000509601 RAB32Q13637 225 aa12.76□□□□□ -0.37
TPM3-220ENST00000509601 RRN3P1Q2M238 152 aa12.76□□□□□ -0.37
TPM3-220ENST00000509601 VWC2Q2TAL6 325 aa12.76□□□□□ -0.37
TPM3-220ENST00000509601 MZT2BQ6NZ67 158 aa12.76□□□□□ -0.37
TPM3-220ENST00000509601 NRARPQ7Z6K4 114 aa12.76□□□□□ -0.37
TPM3-220ENST00000509601 TMEM252Q8N6L7 170 aa12.76□□□□□ -0.37
TPM3-220ENST00000509601 LYRM2Q9NU23 88 aaPredicted RBP12.76□□□□□ -0.37
TPM3-220ENST00000509601 RNF24Q9Y225 148 aa12.76□□□□□ -0.37
TPM3-220ENST00000509601 WDR83OSQ9Y284 106 aa12.76□□□□□ -0.37
TPM3-220ENST00000509601 YTHDF2Q9Y5A9 579 aaKnown RBP12.76□□□□□ -0.37
TPM3-220ENST00000509601 IGSF23A1L1A6 192 aa12.75□□□□□ -0.37
TPM3-220ENST00000509601 OPCMLQ14982 345 aa12.75□□□□□ -0.37
TPM3-220ENST00000509601 OXA1LQ15070 435 aa12.75□□□□□ -0.37
TPM3-220ENST00000509601 MIC13Q5XKP0 118 aa12.75□□□□□ -0.37
TPM3-220ENST00000509601 LRRC20Q8TCA0 184 aa12.75□□□□□ -0.37
TPM3-220ENST00000509601 NIPSNAP3BQ9BS92 247 aa12.75□□□□□ -0.37
TPM3-220ENST00000509601 DNAJC4Q9NNZ3 241 aa12.75□□□□□ -0.37
TPM3-220ENST00000509601 ZNF331Q9NQX6 463 aaPredicted RBP12.75□□□□□ -0.37
TPM3-220ENST00000509601 TRAV12-2A0A075B6T6 113 aa12.74□□□□□ -0.37
TPM3-220ENST00000509601 TRAV5A0A0B4J249 113 aa12.74□□□□□ -0.37
TPM3-220ENST00000509601 ZNF705GA8MUZ8 300 aaPredicted RBP12.74□□□□□ -0.37
TPM3-220ENST00000509601 COX7A2P2O60397 106 aa12.74□□□□□ -0.37
TPM3-220ENST00000509601 PVALBP20472 110 aaPredicted RBP12.74□□□□□ -0.37
TPM3-220ENST00000509601 SULT1A1P50225 295 aa12.74□□□□□ -0.37
TPM3-220ENST00000509601 HIST1H1AQ02539 215 aaPredicted RBP12.74□□□□□ -0.37
TPM3-220ENST00000509601 C10orf113Q5VZT2 155 aa12.74□□□□□ -0.37
TPM3-220ENST00000509601 BAP18Q8IXM2 172 aa12.74□□□□□ -0.37
TPM3-220ENST00000509601 RPUSD4Q96CM3 377 aaKnown RBP12.74□□□□□ -0.37
TPM3-220ENST00000509601 TMEM208Q9BTX3 173 aa12.74□□□□□ -0.37
TPM3-220ENST00000509601 NDUFAF3Q9BU61 184 aa12.74□□□□□ -0.37
TPM3-220ENST00000509601 UQCC1Q9NVA1 299 aa12.74□□□□□ -0.37
TPM3-220ENST00000509601 TEX48A0A1B0GUV7 120 aa12.73□□□□□ -0.37
TPM3-220ENST00000509601 H3BQ15 152 aa12.73□□□□□ -0.37
TPM3-220ENST00000509601 H3BTX0 84 aa12.73□□□□□ -0.37
TPM3-220ENST00000509601 IGLC2P0DOY2 106 aa12.73□□□□□ -0.37
TPM3-220ENST00000509601 CXCL2P19875 107 aa12.73□□□□□ -0.37
TPM3-220ENST00000509601 AZU1P20160 251 aa12.73□□□□□ -0.37
TPM3-220ENST00000509601 S100A11P31949 105 aa12.73□□□□□ -0.37
TPM3-220ENST00000509601 S100A10P60903 97 aa12.73□□□□□ -0.37
TPM3-220ENST00000509601 RAB31Q13636 194 aa12.73□□□□□ -0.37
TPM3-220ENST00000509601 Q6ZRG5 221 aa12.73□□□□□ -0.37
TPM3-220ENST00000509601 BPIFA4PQ86YQ2 179 aa12.73□□□□□ -0.37
TPM3-220ENST00000509601 CHAC2Q8WUX2 184 aa12.73□□□□□ -0.37
TPM3-220ENST00000509601 SAT2Q96F10 170 aaPredicted RBP12.73□□□□□ -0.37
TPM3-220ENST00000509601 DYNC1H1Q14204 4646 aaKnown RBP12.72□□□□□ -0.37
TPM3-220ENST00000509601 PRAC2D3DTV9 90 aa12.72□□□□□ -0.37
TPM3-220ENST00000509601 BOLA2-SMG1P6H3BVE0 249 aa12.72□□□□□ -0.37
TPM3-220ENST00000509601 SLC17A3O00476 420 aa12.72□□□□□ -0.37
TPM3-220ENST00000509601 UPK1BO75841 260 aa12.72□□□□□ -0.37
TPM3-220ENST00000509601 INSP01308 110 aa12.72□□□□□ -0.37
TPM3-220ENST00000509601 RPL29P47914 159 aaKnown RBP12.72□□□□□ -0.37
TPM3-220ENST00000509601 B2MP61769 119 aa12.72□□□□□ -0.37
TPM3-220ENST00000509601 RHOBP62745 196 aa12.72□□□□□ -0.37
TPM3-220ENST00000509601 LCN15Q6UWW0 184 aa12.72□□□□□ -0.37
TPM3-220ENST00000509601 HERC2O95714 4834 aa12.72□□□□□ -0.37
TPM3-220ENST00000509601 PLAC8L1A1L4L8 177 aa12.71□□□□□ -0.37
TPM3-220ENST00000509601 SIX6O95475 246 aa12.71□□□□□ -0.37
TPM3-220ENST00000509601 ATP6V1FQ16864 119 aa12.71□□□□□ -0.37
TPM3-220ENST00000509601 POM121L12Q8N7R1 296 aa12.71□□□□□ -0.37
TPM3-220ENST00000509601 FAM210BQ96KR6 192 aa12.71□□□□□ -0.37
TPM3-220ENST00000509601 SLC50A1Q9BRV3 221 aa12.71□□□□□ -0.37
TPM3-220ENST00000509601 TSPOP30536 169 aa12.7□□□□□ -0.38
TPM3-220ENST00000509601 NHLH2Q02577 135 aa12.7□□□□□ -0.38
TPM3-220ENST00000509601 OR1L4Q8NGR5 311 aa12.7□□□□□ -0.38
TPM3-220ENST00000509601 LINC01587Q99440 93 aa12.7□□□□□ -0.38
TPM3-220ENST00000509601 SLC39A9Q9NUM3 307 aa12.7□□□□□ -0.38
TPM3-220ENST00000509601 UBE2L5PA0A1B0GUS4 154 aa12.69□□□□□ -0.38
TPM3-220ENST00000509601 P0DMU3 169 aa12.69□□□□□ -0.38
TPM3-220ENST00000509601 FAM231AP0DMU4 169 aa12.69□□□□□ -0.38
TPM3-220ENST00000509601 FAM231CP0DMU5 169 aa12.69□□□□□ -0.38
TPM3-220ENST00000509601 KIR3DS1Q14943 382 aa12.69□□□□□ -0.38
TPM3-220ENST00000509601 FCN2Q15485 313 aa12.69□□□□□ -0.38
TPM3-220ENST00000509601 STX12Q86Y82 276 aa12.69□□□□□ -0.38
TPM3-220ENST00000509601 ENKURQ8TC29 256 aa12.69□□□□□ -0.38
TPM3-220ENST00000509601 GPN1Q9HCN4 374 aaPredicted RBP12.69□□□□□ -0.38
TPM3-220ENST00000509601 PPP1R14DQ9NXH3 145 aa12.69□□□□□ -0.38
TPM3-220ENST00000509601 ZNF586Q9NXT0 402 aa12.69□□□□□ -0.38
TPM3-220ENST00000509601 DNAH11Q96DT5 4516 aa12.68□□□□□ -0.38
TPM3-220ENST00000509601 H0YIZ8 118 aa12.68□□□□□ -0.38
TPM3-220ENST00000509601 HTN3P15516 51 aa12.68□□□□□ -0.38
TPM3-220ENST00000509601 CDKN1BP46527 198 aa12.68□□□□□ -0.38
TPM3-220ENST00000509601 DAD1P61803 113 aa12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 133.8 ms