RNA–Protein interactions for RNA: ENST00000509102.5

UBE3D-207, Transcript of ubiquitin protein ligase E3D, humanhuman

TSL 1 (best)

Gene UBE3D, Length 1,246 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UBE3D-207ENST00000509102 PATE2Q6UY27 113 aa13.45□□□□□ -0.26
UBE3D-207ENST00000509102 Q6ZTC4 211 aa13.45□□□□□ -0.26
UBE3D-207ENST00000509102 NRARPQ7Z6K4 114 aa13.45□□□□□ -0.26
UBE3D-207ENST00000509102 RNF182Q8N6D2 247 aa13.45□□□□□ -0.26
UBE3D-207ENST00000509102 OR1L4Q8NGR5 311 aa13.45□□□□□ -0.26
UBE3D-207ENST00000509102 PFDN5Q99471 154 aa13.45□□□□□ -0.26
UBE3D-207ENST00000509102 UBE2L5PA0A1B0GUS4 154 aa13.44□□□□□ -0.26
UBE3D-207ENST00000509102 SPART-AS1P0CW21 52 aa13.44□□□□□ -0.26
UBE3D-207ENST00000509102 EMP1P54849 157 aa13.44□□□□□ -0.26
UBE3D-207ENST00000509102 IGFL4Q6B9Z1 124 aa13.44□□□□□ -0.26
UBE3D-207ENST00000509102 TMEM252Q8N6L7 170 aa13.44□□□□□ -0.26
UBE3D-207ENST00000509102 C17orf77Q96MU5 243 aa13.44□□□□□ -0.26
UBE3D-207ENST00000509102 SLC50A1Q9BRV3 221 aa13.44□□□□□ -0.26
UBE3D-207ENST00000509102 DNAJC4Q9NNZ3 241 aa13.44□□□□□ -0.26
UBE3D-207ENST00000509102 BATF3Q9NR55 127 aa13.44□□□□□ -0.26
UBE3D-207ENST00000509102 WDR83OSQ9Y284 106 aa13.44□□□□□ -0.26
UBE3D-207ENST00000509102 TRAV8-2A0A0B4J237 113 aa13.43□□□□□ -0.26
UBE3D-207ENST00000509102 INMT-MINDY4F8WBC2 141 aa13.43□□□□□ -0.26
UBE3D-207ENST00000509102 CXCL3P19876 107 aa13.43□□□□□ -0.26
UBE3D-207ENST00000509102 CYCSP99999 105 aaKnown RBP13.43□□□□□ -0.26
UBE3D-207ENST00000509102 IGF2BP2-AS1Q96M15 143 aa13.43□□□□□ -0.26
UBE3D-207ENST00000509102 C11orf1Q9H5F2 150 aa13.43□□□□□ -0.26
UBE3D-207ENST00000509102 A8MTW9 85 aa13.42□□□□□ -0.26
UBE3D-207ENST00000509102 INSP01308 110 aa13.42□□□□□ -0.26
UBE3D-207ENST00000509102 B2MP61769 119 aa13.42□□□□□ -0.26
UBE3D-207ENST00000509102 RHOBP62745 196 aa13.42□□□□□ -0.26
UBE3D-207ENST00000509102 HIST1H1AQ02539 215 aaPredicted RBP13.42□□□□□ -0.26
UBE3D-207ENST00000509102 IL15RAQ13261 267 aa13.42□□□□□ -0.26
UBE3D-207ENST00000509102 PSG3Q16557 428 aa13.42□□□□□ -0.26
UBE3D-207ENST00000509102 RRN3P1Q2M238 152 aa13.42□□□□□ -0.26
UBE3D-207ENST00000509102 VWC2Q2TAL6 325 aa13.42□□□□□ -0.26
UBE3D-207ENST00000509102 NMES1Q9C002 83 aa13.42□□□□□ -0.26
UBE3D-207ENST00000509102 SLC25A31Q9H0C2 315 aa13.42□□□□□ -0.26
UBE3D-207ENST00000509102 CELA1Q9UNI1 258 aa13.42□□□□□ -0.26
UBE3D-207ENST00000509102 DEFB131BA0A096LNP1 70 aa13.41□□□□□ -0.26
UBE3D-207ENST00000509102 IGSF23A1L1A6 192 aa13.41□□□□□ -0.26
UBE3D-207ENST00000509102 E5RGE8 158 aa13.41□□□□□ -0.26
UBE3D-207ENST00000509102 MPDU1O75352 247 aa13.41□□□□□ -0.26
UBE3D-207ENST00000509102 FGF7P21781 194 aa13.41□□□□□ -0.26
UBE3D-207ENST00000509102 RPL29P47914 159 aaKnown RBP13.41□□□□□ -0.26
UBE3D-207ENST00000509102 MIC13Q5XKP0 118 aa13.41□□□□□ -0.26
UBE3D-207ENST00000509102 OR11H7Q8NGC8 314 aa13.41□□□□□ -0.26
UBE3D-207ENST00000509102 TMEM37Q8WXS4 190 aa13.41□□□□□ -0.26
UBE3D-207ENST00000509102 LOC102723971A0A1B0GUV8 181 aa13.4□□□□□ -0.26
UBE3D-207ENST00000509102 BOLA2-SMG1P6H3BVE0 249 aa13.4□□□□□ -0.26
UBE3D-207ENST00000509102 PRR20EP86478 221 aa13.4□□□□□ -0.26
UBE3D-207ENST00000509102 PRR20CP86479 221 aa13.4□□□□□ -0.26
UBE3D-207ENST00000509102 PRR20DP86480 221 aa13.4□□□□□ -0.26
UBE3D-207ENST00000509102 PRR20BP86481 221 aa13.4□□□□□ -0.26
UBE3D-207ENST00000509102 PRR20AP86496 221 aa13.4□□□□□ -0.26
UBE3D-207ENST00000509102 GUK1Q16774 197 aa13.4□□□□□ -0.26
UBE3D-207ENST00000509102 SPINK13Q1W4C9 94 aa13.4□□□□□ -0.26
UBE3D-207ENST00000509102 C12orf74Q32Q52 190 aa13.4□□□□□ -0.26
UBE3D-207ENST00000509102 AMTNQ6UX39 209 aa13.4□□□□□ -0.26
UBE3D-207ENST00000509102 OR8A1Q8NGG7 326 aa13.4□□□□□ -0.26
UBE3D-207ENST00000509102 RPUSD4Q96CM3 377 aaKnown RBP13.4□□□□□ -0.26
UBE3D-207ENST00000509102 RNF126Q9BV68 326 aa13.4□□□□□ -0.26
UBE3D-207ENST00000509102 SLC39A9Q9NUM3 307 aa13.4□□□□□ -0.26
UBE3D-207ENST00000509102 PXMP4Q9Y6I8 212 aa13.4□□□□□ -0.26
UBE3D-207ENST00000509102 HYDINQ4G0P3 5121 aa13.4□□□□□ -0.26
UBE3D-207ENST00000509102 M0R2Z0 102 aa13.39□□□□□ -0.27
UBE3D-207ENST00000509102 MRPS12O15235 138 aaKnown RBP13.39□□□□□ -0.27
UBE3D-207ENST00000509102 SSNA1O43805 119 aa13.39□□□□□ -0.27
UBE3D-207ENST00000509102 SIX6O95475 246 aa13.39□□□□□ -0.27
UBE3D-207ENST00000509102 IFITM3Q01628 133 aa13.39□□□□□ -0.27
UBE3D-207ENST00000509102 OPCMLQ14982 345 aa13.39□□□□□ -0.27
UBE3D-207ENST00000509102 LRRC37A5PQ49AS3 106 aa13.39□□□□□ -0.27
UBE3D-207ENST00000509102 ZNF767PQ75MW2 155 aa13.39□□□□□ -0.27
UBE3D-207ENST00000509102 C1orf158Q8N1D5 194 aa13.39□□□□□ -0.27
UBE3D-207ENST00000509102 MARVELD1Q9BSK0 173 aa13.39□□□□□ -0.27
UBE3D-207ENST00000509102 ZNF331Q9NQX6 463 aaPredicted RBP13.39□□□□□ -0.27
UBE3D-207ENST00000509102 IGHV4-4A0A075B6R2 117 aa13.38□□□□□ -0.27
UBE3D-207ENST00000509102 PET100P0DJ07 73 aa13.38□□□□□ -0.27
UBE3D-207ENST00000509102 OR10J6PQ8NGY7 276 aa13.38□□□□□ -0.27
UBE3D-207ENST00000509102 CHAC2Q8WUX2 184 aa13.38□□□□□ -0.27
UBE3D-207ENST00000509102 APLNQ9ULZ1 77 aa13.38□□□□□ -0.27
UBE3D-207ENST00000509102 FAM222AQ5U5X8 452 aa13.37□□□□□ -0.27
UBE3D-207ENST00000509102 OR5C1Q8NGR4 320 aa13.37□□□□□ -0.27
UBE3D-207ENST00000509102 NIPSNAP3BQ9BS92 247 aa13.37□□□□□ -0.27
UBE3D-207ENST00000509102 KCNIP2Q9NS61 270 aa13.37□□□□□ -0.27
UBE3D-207ENST00000509102 DKK2Q9UBU2 259 aa13.37□□□□□ -0.27
UBE3D-207ENST00000509102 SNRPCP09234 159 aaKnown RBP13.36□□□□□ -0.27
UBE3D-207ENST00000509102 TMEM256Q8N2U0 113 aa13.36□□□□□ -0.27
UBE3D-207ENST00000509102 NDUFAF3Q9BU61 184 aa13.36□□□□□ -0.27
UBE3D-207ENST00000509102 NPCDR1Q9BY65 106 aa13.36□□□□□ -0.27
UBE3D-207ENST00000509102 YTHDF2Q9Y5A9 579 aaKnown RBP13.36□□□□□ -0.27
UBE3D-207ENST00000509102 IGLC2P0DOY2 106 aa13.35□□□□□ -0.27
UBE3D-207ENST00000509102 TSPOP30536 169 aa13.35□□□□□ -0.27
UBE3D-207ENST00000509102 CDKN1BP46527 198 aa13.35□□□□□ -0.27
UBE3D-207ENST00000509102 NHLH2Q02577 135 aa13.35□□□□□ -0.27
UBE3D-207ENST00000509102 MORN5Q5VZ52 161 aa13.35□□□□□ -0.27
UBE3D-207ENST00000509102 BAP18Q8IXM2 172 aa13.35□□□□□ -0.27
UBE3D-207ENST00000509102 TRAV12-2A0A075B6T6 113 aa13.34□□□□□ -0.27
UBE3D-207ENST00000509102 H3BTX0 84 aa13.34□□□□□ -0.27
UBE3D-207ENST00000509102 CRXO43186 299 aaPredicted RBP13.34□□□□□ -0.27
UBE3D-207ENST00000509102 DAD1P61803 113 aa13.34□□□□□ -0.27
UBE3D-207ENST00000509102 OXA1LQ15070 435 aa13.34□□□□□ -0.27
UBE3D-207ENST00000509102 THAP6Q8TBB0 222 aa13.34□□□□□ -0.27
UBE3D-207ENST00000509102 PPP1R1CQ8WVI7 109 aa13.34□□□□□ -0.27
UBE3D-207ENST00000509102 LINC01587Q99440 93 aa13.34□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms