RNA–Protein interactions for RNA: ENST00000496298.5

USP40-217, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 665 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-217ENST00000496298 TMEM37Q8WXS4 190 aa13.86□□□□□ -0.19
USP40-217ENST00000496298 LYRM2Q9NU23 88 aaPredicted RBP13.86□□□□□ -0.19
USP40-217ENST00000496298 DKK2Q9UBU2 259 aa13.86□□□□□ -0.19
USP40-217ENST00000496298 WDR83OSQ9Y284 106 aa13.86□□□□□ -0.19
USP40-217ENST00000496298 TEX48A0A1B0GUV7 120 aa13.85□□□□□ -0.19
USP40-217ENST00000496298 CRXO43186 299 aaPredicted RBP13.85□□□□□ -0.19
USP40-217ENST00000496298 CST7O76096 145 aa13.85□□□□□ -0.19
USP40-217ENST00000496298 HBE1P02100 147 aa13.85□□□□□ -0.19
USP40-217ENST00000496298 CXCL2P19875 107 aa13.85□□□□□ -0.19
USP40-217ENST00000496298 CAMLGP49069 296 aa13.85□□□□□ -0.19
USP40-217ENST00000496298 PSG3Q16557 428 aa13.85□□□□□ -0.19
USP40-217ENST00000496298 ZNF738Q8NE65 137 aa13.85□□□□□ -0.19
USP40-217ENST00000496298 UPK1BO75841 260 aa13.84□□□□□ -0.19
USP40-217ENST00000496298 SULT1A1P50225 295 aa13.84□□□□□ -0.19
USP40-217ENST00000496298 RAB31Q13636 194 aa13.84□□□□□ -0.19
USP40-217ENST00000496298 RAB32Q13637 225 aa13.84□□□□□ -0.19
USP40-217ENST00000496298 OXA1LQ15070 435 aa13.84□□□□□ -0.19
USP40-217ENST00000496298 TMEM252Q8N6L7 170 aa13.84□□□□□ -0.19
USP40-217ENST00000496298 OR8A1Q8NGG7 326 aa13.84□□□□□ -0.19
USP40-217ENST00000496298 CHAC2Q8WUX2 184 aa13.84□□□□□ -0.19
USP40-217ENST00000496298 UQCC1Q9NVA1 299 aa13.84□□□□□ -0.19
USP40-217ENST00000496298 LOC102723971A0A1B0GUV8 181 aa13.83□□□□□ -0.2
USP40-217ENST00000496298 COX7A2P2O60397 106 aa13.83□□□□□ -0.2
USP40-217ENST00000496298 S100A11P31949 105 aa13.83□□□□□ -0.2
USP40-217ENST00000496298 EMP1P54849 157 aa13.83□□□□□ -0.2
USP40-217ENST00000496298 IFITM3Q01628 133 aa13.83□□□□□ -0.2
USP40-217ENST00000496298 SPINK13Q1W4C9 94 aa13.83□□□□□ -0.2
USP40-217ENST00000496298 RRN3P1Q2M238 152 aa13.83□□□□□ -0.2
USP40-217ENST00000496298 FAM222AQ5U5X8 452 aa13.83□□□□□ -0.2
USP40-217ENST00000496298 LCN15Q6UWW0 184 aa13.83□□□□□ -0.2
USP40-217ENST00000496298 NRARPQ7Z6K4 114 aa13.83□□□□□ -0.2
USP40-217ENST00000496298 BPIFA4PQ86YQ2 179 aa13.83□□□□□ -0.2
USP40-217ENST00000496298 DNAJC4Q9NNZ3 241 aa13.83□□□□□ -0.2
USP40-217ENST00000496298 ZNF331Q9NQX6 463 aaPredicted RBP13.83□□□□□ -0.2
USP40-217ENST00000496298 IGSF23A1L1A6 192 aa13.82□□□□□ -0.2
USP40-217ENST00000496298 M0R2Z0 102 aa13.82□□□□□ -0.2
USP40-217ENST00000496298 S100A10P60903 97 aa13.82□□□□□ -0.2
USP40-217ENST00000496298 B2MP61769 119 aa13.82□□□□□ -0.2
USP40-217ENST00000496298 MORN5Q5VZ52 161 aa13.82□□□□□ -0.2
USP40-217ENST00000496298 C10orf113Q5VZT2 155 aa13.82□□□□□ -0.2
USP40-217ENST00000496298 LRRC20Q8TCA0 184 aa13.82□□□□□ -0.2
USP40-217ENST00000496298 SLC50A1Q9BRV3 221 aa13.82□□□□□ -0.2
USP40-217ENST00000496298 PTTG2Q9NZH5 202 aa13.82□□□□□ -0.2
USP40-217ENST00000496298 BOLA2-SMG1P6H3BVE0 249 aa13.81□□□□□ -0.2
USP40-217ENST00000496298 INSP01308 110 aa13.81□□□□□ -0.2
USP40-217ENST00000496298 IGLC2P0DOY2 106 aa13.81□□□□□ -0.2
USP40-217ENST00000496298 RPL29P47914 159 aaKnown RBP13.81□□□□□ -0.2
USP40-217ENST00000496298 OPCMLQ14982 345 aa13.81□□□□□ -0.2
USP40-217ENST00000496298 ATP6V1FQ16864 119 aa13.81□□□□□ -0.2
USP40-217ENST00000496298 MIC13Q5XKP0 118 aa13.81□□□□□ -0.2
USP40-217ENST00000496298 Q6ZRG5 221 aa13.81□□□□□ -0.2
USP40-217ENST00000496298 ENKURQ8TC29 256 aa13.81□□□□□ -0.2
USP40-217ENST00000496298 RPUSD4Q96CM3 377 aaKnown RBP13.81□□□□□ -0.2
USP40-217ENST00000496298 FAM210BQ96KR6 192 aa13.81□□□□□ -0.2
USP40-217ENST00000496298 NIPSNAP3BQ9BS92 247 aa13.81□□□□□ -0.2
USP40-217ENST00000496298 GPN1Q9HCN4 374 aaPredicted RBP13.81□□□□□ -0.2
USP40-217ENST00000496298 YTHDF2Q9Y5A9 579 aaKnown RBP13.81□□□□□ -0.2
USP40-217ENST00000496298 TSPOP30536 169 aa13.8□□□□□ -0.2
USP40-217ENST00000496298 HBG1P69891 147 aa13.8□□□□□ -0.2
USP40-217ENST00000496298 HBG2P69892 147 aa13.8□□□□□ -0.2
USP40-217ENST00000496298 HIST1H1AQ02539 215 aaPredicted RBP13.8□□□□□ -0.2
USP40-217ENST00000496298 STX12Q86Y82 276 aa13.8□□□□□ -0.2
USP40-217ENST00000496298 TMEM208Q9BTX3 173 aa13.8□□□□□ -0.2
USP40-217ENST00000496298 NDUFAF3Q9BU61 184 aa13.8□□□□□ -0.2
USP40-217ENST00000496298 OR1L4Q8NGR5 311 aa13.79□□□□□ -0.2
USP40-217ENST00000496298 SAT2Q96F10 170 aaPredicted RBP13.79□□□□□ -0.2
USP40-217ENST00000496298 PFDN5Q99471 154 aa13.79□□□□□ -0.2
USP40-217ENST00000496298 PLA2G2EQ9NZK7 142 aa13.79□□□□□ -0.2
USP40-217ENST00000496298 H3BQ15 152 aa13.78□□□□□ -0.2
USP40-217ENST00000496298 PRAF2O60831 178 aa13.78□□□□□ -0.2
USP40-217ENST00000496298 BAP18Q8IXM2 172 aa13.78□□□□□ -0.2
USP40-217ENST00000496298 NMES1Q9C002 83 aa13.78□□□□□ -0.2
USP40-217ENST00000496298 SLC39A9Q9NUM3 307 aa13.78□□□□□ -0.2
USP40-217ENST00000496298 PXMP4Q9Y6I8 212 aa13.78□□□□□ -0.2
USP40-217ENST00000496298 TRAV12-2A0A075B6T6 113 aa13.77□□□□□ -0.21
USP40-217ENST00000496298 UBE2L5PA0A1B0GUS4 154 aa13.77□□□□□ -0.21
USP40-217ENST00000496298 ZNF705GA8MUZ8 300 aaPredicted RBP13.77□□□□□ -0.21
USP40-217ENST00000496298 SLC17A3O00476 420 aa13.77□□□□□ -0.21
USP40-217ENST00000496298 MPDU1O75352 247 aa13.77□□□□□ -0.21
USP40-217ENST00000496298 SNRPCP09234 159 aaKnown RBP13.77□□□□□ -0.21
USP40-217ENST00000496298 RHOBP62745 196 aa13.77□□□□□ -0.21
USP40-217ENST00000496298 GUK1Q16774 197 aa13.77□□□□□ -0.21
USP40-217ENST00000496298 TMEM256Q8N2U0 113 aa13.77□□□□□ -0.21
USP40-217ENST00000496298 MARVELD1Q9BSK0 173 aa13.77□□□□□ -0.21
USP40-217ENST00000496298 TRAV5A0A0B4J249 113 aa13.76□□□□□ -0.21
USP40-217ENST00000496298 SIX6O95475 246 aa13.76□□□□□ -0.21
USP40-217ENST00000496298 PRM2P04554 102 aa13.76□□□□□ -0.21
USP40-217ENST00000496298 P0DMU3 169 aa13.76□□□□□ -0.21
USP40-217ENST00000496298 FAM231AP0DMU4 169 aa13.76□□□□□ -0.21
USP40-217ENST00000496298 FAM231CP0DMU5 169 aa13.76□□□□□ -0.21
USP40-217ENST00000496298 BAXQ07812 192 aa13.76□□□□□ -0.21
USP40-217ENST00000496298 PLAC8L1A1L4L8 177 aa13.75□□□□□ -0.21
USP40-217ENST00000496298 LYRM9A8MSI8 78 aa13.75□□□□□ -0.21
USP40-217ENST00000496298 INMT-MINDY4F8WBC2 141 aa13.75□□□□□ -0.21
USP40-217ENST00000496298 ZNF253O75346 499 aa13.75□□□□□ -0.21
USP40-217ENST00000496298 RLN2P04090 185 aa13.75□□□□□ -0.21
USP40-217ENST00000496298 FGF7P21781 194 aa13.75□□□□□ -0.21
USP40-217ENST00000496298 CDKN1BP46527 198 aa13.75□□□□□ -0.21
USP40-217ENST00000496298 NHLH2Q02577 135 aa13.75□□□□□ -0.21
USP40-217ENST00000496298 POM121L12Q8N7R1 296 aa13.75□□□□□ -0.21
Retrieved 100 of 20,778 RNA–protein pairs in 35.9 ms