RNA–Protein interactions for RNA: ENST00000493475.2

COL6A3-213, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 669 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-213ENST00000493475 H3BRN7 92 aa8.19□□□□□ -1.1
COL6A3-213ENST00000493475 CXCL2P19875 107 aa8.19□□□□□ -1.1
COL6A3-213ENST00000493475 TTC32Q5I0X7 151 aa8.19□□□□□ -1.1
COL6A3-213ENST00000493475 TEPPQ6URK8 271 aa8.19□□□□□ -1.1
COL6A3-213ENST00000493475 AMTNQ6UX39 209 aa8.19□□□□□ -1.1
COL6A3-213ENST00000493475 ZNF546Q86UE3 836 aa8.19□□□□□ -1.1
COL6A3-213ENST00000493475 OR8A1Q8NGG7 326 aa8.19□□□□□ -1.1
COL6A3-213ENST00000493475 C20orf173Q96LM9 149 aa8.19□□□□□ -1.1
COL6A3-213ENST00000493475 SOSTQ9BQB4 213 aa8.19□□□□□ -1.1
COL6A3-213ENST00000493475 C20orf144Q9BQM9 153 aa8.19□□□□□ -1.1
COL6A3-213ENST00000493475 SLC50A1Q9BRV3 221 aa8.19□□□□□ -1.1
COL6A3-213ENST00000493475 NPVFQ9HCQ7 196 aa8.19□□□□□ -1.1
COL6A3-213ENST00000493475 A0A087X0K7 114 aa8.18□□□□□ -1.1
COL6A3-213ENST00000493475 H7BYZ3 331 aa8.18□□□□□ -1.1
COL6A3-213ENST00000493475 GOSR2O14653 212 aa8.18□□□□□ -1.1
COL6A3-213ENST00000493475 SSSCA1O60232 199 aa8.18□□□□□ -1.1
COL6A3-213ENST00000493475 HTN1P15515 57 aa8.18□□□□□ -1.1
COL6A3-213ENST00000493475 GATA2P23769 480 aaPredicted RBP8.18□□□□□ -1.1
COL6A3-213ENST00000493475 CDKN1BP46527 198 aa8.18□□□□□ -1.1
COL6A3-213ENST00000493475 DLK1P80370 383 aa8.18□□□□□ -1.1
COL6A3-213ENST00000493475 RAB31Q13636 194 aa8.18□□□□□ -1.1
COL6A3-213ENST00000493475 PSG3Q16557 428 aa8.18□□□□□ -1.1
COL6A3-213ENST00000493475 TRIQKQ629K1 86 aa8.18□□□□□ -1.1
COL6A3-213ENST00000493475 LCN15Q6UWW0 184 aa8.18□□□□□ -1.1
COL6A3-213ENST00000493475 BAP18Q8IXM2 172 aa8.18□□□□□ -1.1
COL6A3-213ENST00000493475 C6orf223Q8N319 242 aa8.18□□□□□ -1.1
COL6A3-213ENST00000493475 RNF182Q8N6D2 247 aa8.18□□□□□ -1.1
COL6A3-213ENST00000493475 TRIM63Q969Q1 353 aa8.18□□□□□ -1.1
COL6A3-213ENST00000493475 NBDYA0A0U1RRE5 68 aa8.17□□□□□ -1.1
COL6A3-213ENST00000493475 C16orf90A8MZG2 172 aa8.17□□□□□ -1.1
COL6A3-213ENST00000493475 PRSS46E5RG02 174 aa8.17□□□□□ -1.1
COL6A3-213ENST00000493475 CXCL3P19876 107 aa8.17□□□□□ -1.1
COL6A3-213ENST00000493475 PLP1P60201 277 aa8.17□□□□□ -1.1
COL6A3-213ENST00000493475 C4orf46Q504U0 113 aa8.17□□□□□ -1.1
COL6A3-213ENST00000493475 CCDC190Q86UF4 302 aa8.17□□□□□ -1.1
COL6A3-213ENST00000493475 BPIFA4PQ86YQ2 179 aa8.17□□□□□ -1.1
COL6A3-213ENST00000493475 TMEM263Q8WUH6 116 aaKnown RBP8.17□□□□□ -1.1
COL6A3-213ENST00000493475 RPUSD4Q96CM3 377 aaKnown RBP8.17□□□□□ -1.1
COL6A3-213ENST00000493475 SMIM8Q96KF7 97 aa8.17□□□□□ -1.1
COL6A3-213ENST00000493475 ARL6Q9H0F7 186 aa8.17□□□□□ -1.1
COL6A3-213ENST00000493475 TRAV12-2A0A075B6T6 113 aa8.16□□□□□ -1.1
COL6A3-213ENST00000493475 C9orf170A2RU37 121 aa8.16□□□□□ -1.1
COL6A3-213ENST00000493475 SNURFLB1AK76 121 aa8.16□□□□□ -1.1
COL6A3-213ENST00000493475 COX7A2P2O60397 106 aa8.16□□□□□ -1.1
COL6A3-213ENST00000493475 TSC22D2O75157 780 aa8.16□□□□□ -1.1
COL6A3-213ENST00000493475 SCGB1D2O95969 90 aa8.16□□□□□ -1.1
COL6A3-213ENST00000493475 TAS2R30P59541 319 aa8.16□□□□□ -1.1
COL6A3-213ENST00000493475 RRAS2P62070 204 aaPredicted RBP8.16□□□□□ -1.1
COL6A3-213ENST00000493475 POLR2GP62487 172 aaKnown RBP eCLIP8.16□□□□□ -1.1
COL6A3-213ENST00000493475 ID3Q02535 119 aa8.16□□□□□ -1.1
COL6A3-213ENST00000493475 CNPY1Q3B7I2 92 aa8.16□□□□□ -1.1
COL6A3-213ENST00000493475 GGACTQ9BVM4 153 aa8.16□□□□□ -1.1
COL6A3-213ENST00000493475 ARV1Q9H2C2 271 aa8.16□□□□□ -1.1
COL6A3-213ENST00000493475 PXMP4Q9Y6I8 212 aa8.16□□□□□ -1.1
COL6A3-213ENST00000493475 PKHD1P08F94 4074 aa8.15□□□□□ -1.1
COL6A3-213ENST00000493475 TRAV8-2A0A0B4J237 113 aa8.15□□□□□ -1.1
COL6A3-213ENST00000493475 K7EPK0 472 aa8.15□□□□□ -1.1
COL6A3-213ENST00000493475 L7N2F9 121 aa8.15□□□□□ -1.1
COL6A3-213ENST00000493475 CRXO43186 299 aaPredicted RBP8.15□□□□□ -1.1
COL6A3-213ENST00000493475 RLN2P04090 185 aa8.15□□□□□ -1.1
COL6A3-213ENST00000493475 VAMP2P63027 116 aa8.15□□□□□ -1.1
COL6A3-213ENST00000493475 ZNF846Q147U1 533 aa8.15□□□□□ -1.1
COL6A3-213ENST00000493475 IGFL4Q6B9Z1 124 aa8.15□□□□□ -1.1
COL6A3-213ENST00000493475 Q6ZRG5 221 aa8.15□□□□□ -1.1
COL6A3-213ENST00000493475 GNPNAT1Q96EK6 184 aaPredicted RBP8.15□□□□□ -1.1
COL6A3-213ENST00000493475 ZNF503Q96F45 646 aa8.15□□□□□ -1.1
COL6A3-213ENST00000493475 UHRF2Q96PU4 802 aa8.15□□□□□ -1.1
COL6A3-213ENST00000493475 V9GYH0 126 aa8.15□□□□□ -1.1
COL6A3-213ENST00000493475 PMS2P5A8MQ11 134 aa8.14□□□□□ -1.11
COL6A3-213ENST00000493475 NDUFB6O95139 128 aa8.14□□□□□ -1.11
COL6A3-213ENST00000493475 METTL15P1P0C7V9 234 aa8.14□□□□□ -1.11
COL6A3-213ENST00000493475 M6PRP20645 277 aa8.14□□□□□ -1.11
COL6A3-213ENST00000493475 OR5I1Q13606 314 aa8.14□□□□□ -1.11
COL6A3-213ENST00000493475 GUK1Q16774 197 aa8.14□□□□□ -1.11
COL6A3-213ENST00000493475 IAH1Q2TAA2 248 aaPredicted RBP8.14□□□□□ -1.11
COL6A3-213ENST00000493475 TMEM182Q6ZP80 229 aaPredicted RBP8.14□□□□□ -1.11
COL6A3-213ENST00000493475 LINC00305Q7Z4B0 112 aa8.14□□□□□ -1.11
COL6A3-213ENST00000493475 ZNRF2Q8NHG8 242 aa8.14□□□□□ -1.11
COL6A3-213ENST00000493475 NOP10Q9NPE3 64 aaKnown RBP8.14□□□□□ -1.11
COL6A3-213ENST00000493475 GSKIPQ9P0R6 139 aa8.14□□□□□ -1.11
COL6A3-213ENST00000493475 CDK2AP2O75956 126 aa8.13□□□□□ -1.11
COL6A3-213ENST00000493475 OR4E1P0C645 316 aa8.13□□□□□ -1.11
COL6A3-213ENST00000493475 BTF3P20290 206 aaKnown RBP8.13□□□□□ -1.11
COL6A3-213ENST00000493475 PVALBP20472 110 aaPredicted RBP8.13□□□□□ -1.11
COL6A3-213ENST00000493475 LEPP41159 167 aa8.13□□□□□ -1.11
COL6A3-213ENST00000493475 SLC38A11Q08AI6 406 aa8.13□□□□□ -1.11
COL6A3-213ENST00000493475 C10orf113Q5VZT2 155 aa8.13□□□□□ -1.11
COL6A3-213ENST00000493475 TMEM14EPQ6UXP3 125 aa8.13□□□□□ -1.11
COL6A3-213ENST00000493475 SSX7Q7RTT5 188 aa8.13□□□□□ -1.11
COL6A3-213ENST00000493475 ZNF575Q86XF7 245 aa8.13□□□□□ -1.11
COL6A3-213ENST00000493475 C12orf45Q8N5I9 185 aaPredicted RBP8.13□□□□□ -1.11
COL6A3-213ENST00000493475 OR1L4Q8NGR5 311 aa8.13□□□□□ -1.11
COL6A3-213ENST00000493475 PFDN5Q99471 154 aa8.13□□□□□ -1.11
COL6A3-213ENST00000493475 FAT2Q9NYQ8 4349 aa8.13□□□□□ -1.11
COL6A3-213ENST00000493475 A0A1W2PPQ1 181 aa8.12□□□□□ -1.11
COL6A3-213ENST00000493475 H3BNG1 76 aa8.12□□□□□ -1.11
COL6A3-213ENST00000493475 FAM229AH3BQW9 127 aa8.12□□□□□ -1.11
COL6A3-213ENST00000493475 AGPAT2O15120 278 aa8.12□□□□□ -1.11
COL6A3-213ENST00000493475 AZU1P20160 251 aa8.12□□□□□ -1.11
COL6A3-213ENST00000493475 ZBTB8BQ8NAP8 495 aaPredicted RBP8.12□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms