RNA–Protein interactions for RNA: ENST00000489156.1

SYNE1-227, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,891 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-227ENST00000489156 LY96Q9Y6Y9 160 aa12.2□□□□□ -0.46
SYNE1-227ENST00000489156 PGPA6NDG6 321 aa12.19□□□□□ -0.46
SYNE1-227ENST00000489156 TRBV12-3P01733 135 aa12.19□□□□□ -0.46
SYNE1-227ENST00000489156 RPL35P42766 123 aaKnown RBP12.19□□□□□ -0.46
SYNE1-227ENST00000489156 RPL23P62829 140 aaKnown RBP12.19□□□□□ -0.46
SYNE1-227ENST00000489156 C5orf17Q8NAS9 161 aa12.19□□□□□ -0.46
SYNE1-227ENST00000489156 UBE2E2Q96LR5 201 aa12.19□□□□□ -0.46
SYNE1-227ENST00000489156 MDFIQ99750 246 aa12.19□□□□□ -0.46
SYNE1-227ENST00000489156 Q9H3A6 140 aa12.19□□□□□ -0.46
SYNE1-227ENST00000489156 U3KQE9 123 aa12.19□□□□□ -0.46
SYNE1-227ENST00000489156 KHDC1LQ5JSQ8 128 aa12.19□□□□□ -0.46
SYNE1-227ENST00000489156 TMEM88Q6PEY1 159 aa12.19□□□□□ -0.46
SYNE1-227ENST00000489156 CITED2Q99967 270 aaPredicted RBP12.19□□□□□ -0.46
SYNE1-227ENST00000489156 EPDR1Q9UM22 224 aa12.19□□□□□ -0.46
SYNE1-227ENST00000489156 TSPAN4O14817 238 aa12.18□□□□□ -0.46
SYNE1-227ENST00000489156 ADIRFQ15847 76 aa12.18□□□□□ -0.46
SYNE1-227ENST00000489156 LINC01551Q86U37 167 aa12.18□□□□□ -0.46
SYNE1-227ENST00000489156 CBLN2Q8IUK8 224 aa12.18□□□□□ -0.46
SYNE1-227ENST00000489156 TRBV20OR9-2A0A075B6H5 130 aa12.17□□□□□ -0.46
SYNE1-227ENST00000489156 IGHV3OR16-8A0A075B7F1 116 aa12.17□□□□□ -0.46
SYNE1-227ENST00000489156 CXorf65A6NEN9 183 aa12.17□□□□□ -0.46
SYNE1-227ENST00000489156 PEX7O00628 323 aa12.17□□□□□ -0.46
SYNE1-227ENST00000489156 ZNF253O75346 499 aa12.17□□□□□ -0.46
SYNE1-227ENST00000489156 SLC25A5P05141 298 aaKnown RBP12.17□□□□□ -0.46
SYNE1-227ENST00000489156 SNRPCP09234 159 aaKnown RBP12.17□□□□□ -0.46
SYNE1-227ENST00000489156 TAS2R60P59551 318 aa12.17□□□□□ -0.46
SYNE1-227ENST00000489156 C12orf54Q6X4T0 127 aa12.17□□□□□ -0.46
SYNE1-227ENST00000489156 CTDSP1Q9GZU7 261 aa12.17□□□□□ -0.46
SYNE1-227ENST00000489156 WNK1Q9H4A3 2382 aa12.17□□□□□ -0.46
SYNE1-227ENST00000489156 MT-ND4LP03901 98 aa12.17□□□□□ -0.46
SYNE1-227ENST00000489156 AKR1C3P42330 323 aa12.17□□□□□ -0.46
SYNE1-227ENST00000489156 CNN1P51911 297 aaKnown RBP12.17□□□□□ -0.46
SYNE1-227ENST00000489156 PSG9Q00887 426 aa12.17□□□□□ -0.46
SYNE1-227ENST00000489156 C18orf65Q6ZTR6 163 aa12.17□□□□□ -0.46
SYNE1-227ENST00000489156 GPHB5Q86YW7 130 aa12.17□□□□□ -0.46
SYNE1-227ENST00000489156 OR5B12Q96R08 314 aa12.17□□□□□ -0.46
SYNE1-227ENST00000489156 ATG101Q9BSB4 218 aa12.17□□□□□ -0.46
SYNE1-227ENST00000489156 A0A1W2PRX2 142 aa12.16□□□□□ -0.46
SYNE1-227ENST00000489156 S100A9P06702 114 aaKnown RBP12.16□□□□□ -0.46
SYNE1-227ENST00000489156 GALR1P47211 349 aa12.16□□□□□ -0.46
SYNE1-227ENST00000489156 MEOX2P50222 304 aa12.16□□□□□ -0.46
SYNE1-227ENST00000489156 FAM106AQ4KMX7 169 aa12.16□□□□□ -0.46
SYNE1-227ENST00000489156 SIGLEC15Q6ZMC9 328 aa12.16□□□□□ -0.46
SYNE1-227ENST00000489156 ARL6IP6Q8N6S5 226 aa12.16□□□□□ -0.46
SYNE1-227ENST00000489156 C3orf56Q8N813 242 aa12.16□□□□□ -0.46
SYNE1-227ENST00000489156 KLF12Q9Y4X4 402 aa12.16□□□□□ -0.46
SYNE1-227ENST00000489156 A0A087X0K7 114 aa12.15□□□□□ -0.46
SYNE1-227ENST00000489156 H3BTX0 84 aa12.15□□□□□ -0.46
SYNE1-227ENST00000489156 LGALS1P09382 135 aaKnown RBP12.15□□□□□ -0.46
SYNE1-227ENST00000489156 GNG4P50150 75 aa12.15□□□□□ -0.46
SYNE1-227ENST00000489156 OCC1Q8TAD7 63 aa12.15□□□□□ -0.46
SYNE1-227ENST00000489156 CMTM2Q8TAZ6 248 aa12.15□□□□□ -0.46
SYNE1-227ENST00000489156 ANAPC16Q96DE5 110 aa12.15□□□□□ -0.46
SYNE1-227ENST00000489156 C17orf77Q96MU5 243 aa12.15□□□□□ -0.46
SYNE1-227ENST00000489156 CITED1Q99966 193 aa12.15□□□□□ -0.46
SYNE1-227ENST00000489156 AAMDCQ9H7C9 122 aa12.15□□□□□ -0.46
SYNE1-227ENST00000489156 TSSC4Q9Y5U2 329 aaPredicted RBP12.15□□□□□ -0.46
SYNE1-227ENST00000489156 A0A1W2PS18 150 aa12.14□□□□□ -0.47
SYNE1-227ENST00000489156 K7EMT4 169 aa12.14□□□□□ -0.47
SYNE1-227ENST00000489156 TCRAP04437 139 aa12.14□□□□□ -0.47
SYNE1-227ENST00000489156 ATF4P18848 351 aaPredicted RBP12.14□□□□□ -0.47
SYNE1-227ENST00000489156 CDX1P47902 265 aaPredicted RBP12.14□□□□□ -0.47
SYNE1-227ENST00000489156 RNF212Q495C1 297 aa12.14□□□□□ -0.47
SYNE1-227ENST00000489156 UNQ9165/PRO28630Q6UXU0 137 aa12.14□□□□□ -0.47
SYNE1-227ENST00000489156 SREK1IP1Q8N9Q2 155 aaPredicted RBP12.14□□□□□ -0.47
SYNE1-227ENST00000489156 SMAD5-AS1Q9Y6J3 95 aa12.14□□□□□ -0.47
SYNE1-227ENST00000489156 TMEM183BQ1AE95 376 aa12.14□□□□□ -0.47
SYNE1-227ENST00000489156 C15orf54Q8N8G6 183 aa12.14□□□□□ -0.47
SYNE1-227ENST00000489156 ISOC2Q96AB3 205 aa12.14□□□□□ -0.47
SYNE1-227ENST00000489156 ZNF747Q9BV97 191 aa12.14□□□□□ -0.47
SYNE1-227ENST00000489156 DAZ1Q9NQZ3 744 aaKnown RBP12.14□□□□□ -0.47
SYNE1-227ENST00000489156 NSUN5P1Q3KNT7 163 aa12.13□□□□□ -0.47
SYNE1-227ENST00000489156 CENPWQ5EE01 88 aa12.13□□□□□ -0.47
SYNE1-227ENST00000489156 C16orf54Q6UWD8 224 aa12.13□□□□□ -0.47
SYNE1-227ENST00000489156 EXOC3-AS1Q8N2X6 119 aa12.13□□□□□ -0.47
SYNE1-227ENST00000489156 KLHL30-AS1Q8NEE0 82 aa12.13□□□□□ -0.47
SYNE1-227ENST00000489156 SMIM12Q96EX1 92 aa12.13□□□□□ -0.47
SYNE1-227ENST00000489156 GRAMD2BQ96HH9 432 aa12.13□□□□□ -0.47
SYNE1-227ENST00000489156 FMC1Q96HJ9 113 aa12.13□□□□□ -0.47
SYNE1-227ENST00000489156 ZNF320A2RRD8 509 aa12.12□□□□□ -0.47
SYNE1-227ENST00000489156 ADARB2-AS1A8MUL3 147 aa12.12□□□□□ -0.47
SYNE1-227ENST00000489156 SLC17A3O00476 420 aa12.12□□□□□ -0.47
SYNE1-227ENST00000489156 PPP1R2P9O14990 202 aa12.12□□□□□ -0.47
SYNE1-227ENST00000489156 APOHP02749 345 aaPredicted RBP12.12□□□□□ -0.47
SYNE1-227ENST00000489156 RPEL1Q2QD12 228 aa12.12□□□□□ -0.47
SYNE1-227ENST00000489156 IGF2BP2-AS1Q96M15 143 aa12.12□□□□□ -0.47
SYNE1-227ENST00000489156 PGPEP1LA6NFU8 196 aa12.12□□□□□ -0.47
SYNE1-227ENST00000489156 ZNF785A8K8V0 405 aa12.12□□□□□ -0.47
SYNE1-227ENST00000489156 ZNF207O43670 478 aaKnown RBP12.12□□□□□ -0.47
SYNE1-227ENST00000489156 UBE2G1P62253 170 aa12.12□□□□□ -0.47
SYNE1-227ENST00000489156 GNG5P63218 68 aa12.12□□□□□ -0.47
SYNE1-227ENST00000489156 SLC50A1Q9BRV3 221 aa12.12□□□□□ -0.47
SYNE1-227ENST00000489156 SERTM2A0A1B0GWG4 89 aa12.11□□□□□ -0.47
SYNE1-227ENST00000489156 K7EQM0 130 aa12.11□□□□□ -0.47
SYNE1-227ENST00000489156 DEFB136Q30KP8 78 aa12.11□□□□□ -0.47
SYNE1-227ENST00000489156 C8orf86Q6ZUL3 223 aa12.11□□□□□ -0.47
SYNE1-227ENST00000489156 NDUFA11Q86Y39 141 aa12.11□□□□□ -0.47
SYNE1-227ENST00000489156 C4orf3Q8WVX3 66 aa12.11□□□□□ -0.47
SYNE1-227ENST00000489156 GLMPQ8WWB7 406 aa12.11□□□□□ -0.47
SYNE1-227ENST00000489156 SFRP2Q96HF1 295 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms