RNA–Protein interactions for RNA: ENST00000485306.1

TRIM54-203, Transcript of tripartite motif containing 54, humanhuman

TSL 2

Gene TRIM54, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-203ENST00000485306 GLMPQ8WWB7 406 aa12.31□□□□□ -0.44
TRIM54-203ENST00000485306 UHRF2Q96PU4 802 aa12.31□□□□□ -0.44
TRIM54-203ENST00000485306 SEPSECSQ9HD40 501 aaKnown RBP12.31□□□□□ -0.44
TRIM54-203ENST00000485306 KIR2DL5BA0A0G2JN68 375 aa12.3□□□□□ -0.44
TRIM54-203ENST00000485306 KIR2DL5BA0A0G2JPC4 375 aa12.3□□□□□ -0.44
TRIM54-203ENST00000485306 GALR1P47211 349 aa12.3□□□□□ -0.44
TRIM54-203ENST00000485306 TFPI2P48307 235 aa12.3□□□□□ -0.44
TRIM54-203ENST00000485306 CDC34P49427 236 aaPredicted RBP12.3□□□□□ -0.44
TRIM54-203ENST00000485306 SULT1A2P50226 295 aa12.3□□□□□ -0.44
TRIM54-203ENST00000485306 ODF3L2Q3SX64 289 aa12.3□□□□□ -0.44
TRIM54-203ENST00000485306 FAM90A2PQ658T7 463 aa12.3□□□□□ -0.44
TRIM54-203ENST00000485306 FAM122CQ6P4D5 195 aa12.3□□□□□ -0.44
TRIM54-203ENST00000485306 Q6ZWC4 215 aa12.3□□□□□ -0.44
TRIM54-203ENST00000485306 BPIFA4PQ86YQ2 179 aa12.3□□□□□ -0.44
TRIM54-203ENST00000485306 KIR2DL5AQ8N109 375 aa12.3□□□□□ -0.44
TRIM54-203ENST00000485306 KIR2DL5BQ8NHK3 375 aa12.3□□□□□ -0.44
TRIM54-203ENST00000485306 OVOL2Q9BRP0 275 aa12.3□□□□□ -0.44
TRIM54-203ENST00000485306 SCRT1Q9BWW7 348 aa12.3□□□□□ -0.44
TRIM54-203ENST00000485306 TMEM14CQ9P0S9 112 aa12.3□□□□□ -0.44
TRIM54-203ENST00000485306 IGKV3-7A0A075B6H7 116 aa12.29□□□□□ -0.44
TRIM54-203ENST00000485306 IGHV3-66A0A0C4DH42 116 aa12.29□□□□□ -0.44
TRIM54-203ENST00000485306 CTXND1A0A1B0GTU2 59 aa12.29□□□□□ -0.44
TRIM54-203ENST00000485306 MEOX2P50222 304 aa12.29□□□□□ -0.44
TRIM54-203ENST00000485306 RPL11P62913 178 aaKnown RBP12.29□□□□□ -0.44
TRIM54-203ENST00000485306 KHDC3LQ587J8 217 aa12.29□□□□□ -0.44
TRIM54-203ENST00000485306 TCF24Q7RTU0 167 aa12.29□□□□□ -0.44
TRIM54-203ENST00000485306 SLC25A22Q9H936 323 aa12.29□□□□□ -0.44
TRIM54-203ENST00000485306 TP53TG1Q9Y2A0 90 aa12.29□□□□□ -0.44
TRIM54-203ENST00000485306 DNASE2O00115 360 aaPredicted RBP12.28□□□□□ -0.44
TRIM54-203ENST00000485306 SPRY2O43597 315 aa12.28□□□□□ -0.44
TRIM54-203ENST00000485306 SAMD13Q5VXD3 122 aa12.28□□□□□ -0.44
TRIM54-203ENST00000485306 SIGLEC15Q6ZMC9 328 aa12.28□□□□□ -0.44
TRIM54-203ENST00000485306 PQLC2Q6ZP29 291 aa12.28□□□□□ -0.44
TRIM54-203ENST00000485306 MIR17HGQ75NE6 70 aa12.28□□□□□ -0.44
TRIM54-203ENST00000485306 GBGT1Q8N5D6 347 aa12.28□□□□□ -0.44
TRIM54-203ENST00000485306 RNF141Q8WVD5 230 aa12.28□□□□□ -0.44
TRIM54-203ENST00000485306 RAB24Q969Q5 203 aa12.28□□□□□ -0.44
TRIM54-203ENST00000485306 PLA2G2EQ9NZK7 142 aa12.28□□□□□ -0.44
TRIM54-203ENST00000485306 IFNA7P01567 189 aa12.27□□□□□ -0.45
TRIM54-203ENST00000485306 STAG3L2P0CL84 134 aa12.27□□□□□ -0.45
TRIM54-203ENST00000485306 STAG3L3P0CL85 134 aa12.27□□□□□ -0.45
TRIM54-203ENST00000485306 SPATA31B1PQ5VZV4 182 aa12.27□□□□□ -0.45
TRIM54-203ENST00000485306 LEMD1Q68G75 181 aa12.27□□□□□ -0.45
TRIM54-203ENST00000485306 TEX261Q6UWH6 196 aa12.27□□□□□ -0.45
TRIM54-203ENST00000485306 LRRC20Q8TCA0 184 aa12.27□□□□□ -0.45
TRIM54-203ENST00000485306 FAM167A-AS1Q96KT0 104 aa12.27□□□□□ -0.45
TRIM54-203ENST00000485306 SLC25A2Q9BXI2 301 aa12.27□□□□□ -0.45
TRIM54-203ENST00000485306 CSMD3Q7Z407 3707 aa12.27□□□□□ -0.45
TRIM54-203ENST00000485306 TRAV2A0A0B4J234 112 aa12.26□□□□□ -0.45
TRIM54-203ENST00000485306 LCE6AA0A183 80 aa12.26□□□□□ -0.45
TRIM54-203ENST00000485306 MRPS12O15235 138 aaKnown RBP12.26□□□□□ -0.45
TRIM54-203ENST00000485306 RPL35AP18077 110 aaKnown RBP12.26□□□□□ -0.45
TRIM54-203ENST00000485306 MORN5Q5VZ52 161 aa12.26□□□□□ -0.45
TRIM54-203ENST00000485306 ALKAL2Q6UX46 152 aa12.26□□□□□ -0.45
TRIM54-203ENST00000485306 WFDC3Q8IUB2 231 aa12.26□□□□□ -0.45
TRIM54-203ENST00000485306 APRG1Q8IVJ8 170 aa12.26□□□□□ -0.45
TRIM54-203ENST00000485306 FAM213BQ8TBF2 198 aa12.26□□□□□ -0.45
TRIM54-203ENST00000485306 MBD3L1Q8WWY6 194 aa12.26□□□□□ -0.45
TRIM54-203ENST00000485306 OR51M1Q9H341 326 aa12.26□□□□□ -0.45
TRIM54-203ENST00000485306 MAP6D1Q9H9H5 199 aa12.26□□□□□ -0.45
TRIM54-203ENST00000485306 A0A087X0K7 114 aa12.25□□□□□ -0.45
TRIM54-203ENST00000485306 TRAV5A0A0B4J249 113 aa12.25□□□□□ -0.45
TRIM54-203ENST00000485306 HIST1H1EP10412 219 aaKnown RBP12.25□□□□□ -0.45
TRIM54-203ENST00000485306 ATF4P18848 351 aaPredicted RBP12.25□□□□□ -0.45
TRIM54-203ENST00000485306 GUK1Q16774 197 aa12.25□□□□□ -0.45
TRIM54-203ENST00000485306 DEFB135Q30KP9 77 aa12.25□□□□□ -0.45
TRIM54-203ENST00000485306 ZNF680Q8NEM1 530 aa12.25□□□□□ -0.45
TRIM54-203ENST00000485306 PAXXQ9BUH6 204 aa12.25□□□□□ -0.45
TRIM54-203ENST00000485306 MS4A6AQ9H2W1 248 aa12.25□□□□□ -0.45
TRIM54-203ENST00000485306 HRH4Q9H3N8 390 aa12.25□□□□□ -0.45
TRIM54-203ENST00000485306 NRN1Q9NPD7 142 aa12.25□□□□□ -0.45
TRIM54-203ENST00000485306 TENM2Q9NT68 2774 aa12.24□□□□□ -0.45
TRIM54-203ENST00000485306 RYR3Q15413 4870 aa12.24□□□□□ -0.45
TRIM54-203ENST00000485306 TEX46H3BTG2 121 aa12.24□□□□□ -0.45
TRIM54-203ENST00000485306 OR7C2O60412 319 aa12.24□□□□□ -0.45
TRIM54-203ENST00000485306 CXorf1O96002 111 aa12.24□□□□□ -0.45
TRIM54-203ENST00000485306 BLOC1S1P78537 153 aa12.24□□□□□ -0.45
TRIM54-203ENST00000485306 ZNF726P1Q15940 193 aa12.24□□□□□ -0.45
TRIM54-203ENST00000485306 RNF183Q96D59 192 aa12.24□□□□□ -0.45
TRIM54-203ENST00000485306 SAT2Q96F10 170 aaPredicted RBP12.24□□□□□ -0.45
TRIM54-203ENST00000485306 CSTL1Q9H114 145 aa12.24□□□□□ -0.45
TRIM54-203ENST00000485306 TRAV1-1A0A0B4J248 108 aa12.23□□□□□ -0.45
TRIM54-203ENST00000485306 MAP1LC3B2A6NCE7 125 aa12.23□□□□□ -0.45
TRIM54-203ENST00000485306 ZNF253O75346 499 aa12.23□□□□□ -0.45
TRIM54-203ENST00000485306 HBE1P02100 147 aa12.23□□□□□ -0.45
TRIM54-203ENST00000485306 H2AFB1P0C5Y9 115 aa12.23□□□□□ -0.45
TRIM54-203ENST00000485306 IGLC2P0DOY2 106 aa12.23□□□□□ -0.45
TRIM54-203ENST00000485306 PDE6HQ13956 83 aa12.23□□□□□ -0.45
TRIM54-203ENST00000485306 FAM74A1Q5RGS3 127 aa12.23□□□□□ -0.45
TRIM54-203ENST00000485306 LCN15Q6UWW0 184 aa12.23□□□□□ -0.45
TRIM54-203ENST00000485306 MAP1LC3BQ9GZQ8 125 aa12.23□□□□□ -0.45
TRIM54-203ENST00000485306 TMEM167BQ9NRX6 74 aa12.23□□□□□ -0.45
TRIM54-203ENST00000485306 CLEC5AQ9NY25 188 aa12.23□□□□□ -0.45
TRIM54-203ENST00000485306 ZNF705EA8MWA4 302 aaPredicted RBP12.22□□□□□ -0.45
TRIM54-203ENST00000485306 FHITP49789 147 aa12.22□□□□□ -0.45
TRIM54-203ENST00000485306 UBE2L3P68036 154 aaKnown RBP12.22□□□□□ -0.45
TRIM54-203ENST00000485306 ZNF767PQ75MW2 155 aa12.22□□□□□ -0.45
TRIM54-203ENST00000485306 SFT2D1Q8WV19 159 aa12.22□□□□□ -0.45
TRIM54-203ENST00000485306 NBEAP1P0C6P0 100 aa12.21□□□□□ -0.45
TRIM54-203ENST00000485306 ARL14EPLP0DKL9 152 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms