RNA–Protein interactions for RNA: ENST00000481800.1

COL9A3-212, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 4

Gene COL9A3, Length 548 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-212ENST00000481800 C11orf1Q9H5F2 150 aa12.67□□□□□ -0.38
COL9A3-212ENST00000481800 PPP1R14DQ9NXH3 145 aa12.67□□□□□ -0.38
COL9A3-212ENST00000481800 APLNQ9ULZ1 77 aa12.67□□□□□ -0.38
COL9A3-212ENST00000481800 TEX48A0A1B0GUV7 120 aa12.66□□□□□ -0.38
COL9A3-212ENST00000481800 CXCL2P19875 107 aa12.66□□□□□ -0.38
COL9A3-212ENST00000481800 CXCL3P19876 107 aa12.66□□□□□ -0.38
COL9A3-212ENST00000481800 RHOBP62745 196 aa12.66□□□□□ -0.38
COL9A3-212ENST00000481800 IL15RAQ13261 267 aa12.66□□□□□ -0.38
COL9A3-212ENST00000481800 PSG3Q16557 428 aa12.66□□□□□ -0.38
COL9A3-212ENST00000481800 RRN3P1Q2M238 152 aa12.66□□□□□ -0.38
COL9A3-212ENST00000481800 AMTNQ6UX39 209 aa12.66□□□□□ -0.38
COL9A3-212ENST00000481800 C1orf158Q8N1D5 194 aa12.66□□□□□ -0.38
COL9A3-212ENST00000481800 TMEM252Q8N6L7 170 aa12.66□□□□□ -0.38
COL9A3-212ENST00000481800 OR11H7Q8NGC8 314 aa12.66□□□□□ -0.38
COL9A3-212ENST00000481800 OR1L4Q8NGR5 311 aa12.66□□□□□ -0.38
COL9A3-212ENST00000481800 DNAJC4Q9NNZ3 241 aa12.66□□□□□ -0.38
COL9A3-212ENST00000481800 WDR83OSQ9Y284 106 aa12.66□□□□□ -0.38
COL9A3-212ENST00000481800 IGHV4-4A0A075B6R2 117 aa12.65□□□□□ -0.38
COL9A3-212ENST00000481800 UBE2L5PA0A1B0GUS4 154 aa12.65□□□□□ -0.38
COL9A3-212ENST00000481800 IGSF23A1L1A6 192 aa12.65□□□□□ -0.38
COL9A3-212ENST00000481800 RLN2P04090 185 aa12.65□□□□□ -0.38
COL9A3-212ENST00000481800 HIST1H1AQ02539 215 aaPredicted RBP12.65□□□□□ -0.38
COL9A3-212ENST00000481800 BAXQ07812 192 aa12.65□□□□□ -0.38
COL9A3-212ENST00000481800 SPINK13Q1W4C9 94 aa12.65□□□□□ -0.38
COL9A3-212ENST00000481800 MIC13Q5XKP0 118 aa12.65□□□□□ -0.38
COL9A3-212ENST00000481800 LCN15Q6UWW0 184 aa12.65□□□□□ -0.38
COL9A3-212ENST00000481800 RPP25LQ8N5L8 163 aaKnown RBP12.65□□□□□ -0.38
COL9A3-212ENST00000481800 TMEM37Q8WXS4 190 aa12.65□□□□□ -0.38
COL9A3-212ENST00000481800 SLC50A1Q9BRV3 221 aa12.65□□□□□ -0.38
COL9A3-212ENST00000481800 RNF126Q9BV68 326 aa12.65□□□□□ -0.38
COL9A3-212ENST00000481800 LOC102723971A0A1B0GUV8 181 aa12.64□□□□□ -0.39
COL9A3-212ENST00000481800 INMT-MINDY4F8WBC2 141 aa12.64□□□□□ -0.39
COL9A3-212ENST00000481800 M0R2Z0 102 aa12.64□□□□□ -0.39
COL9A3-212ENST00000481800 MRPS12O15235 138 aaKnown RBP12.64□□□□□ -0.39
COL9A3-212ENST00000481800 PRAF2O60831 178 aa12.64□□□□□ -0.39
COL9A3-212ENST00000481800 INSP01308 110 aa12.64□□□□□ -0.39
COL9A3-212ENST00000481800 ATP6V1FQ16864 119 aa12.64□□□□□ -0.39
COL9A3-212ENST00000481800 VWC2Q2TAL6 325 aa12.64□□□□□ -0.39
COL9A3-212ENST00000481800 OR8A1Q8NGG7 326 aa12.64□□□□□ -0.39
COL9A3-212ENST00000481800 BOLA2-SMG1P6H3BVE0 249 aa12.63□□□□□ -0.39
COL9A3-212ENST00000481800 SIX6O95475 246 aa12.63□□□□□ -0.39
COL9A3-212ENST00000481800 SNRPCP09234 159 aaKnown RBP12.63□□□□□ -0.39
COL9A3-212ENST00000481800 RPL29P47914 159 aaKnown RBP12.63□□□□□ -0.39
COL9A3-212ENST00000481800 PRR20EP86478 221 aa12.63□□□□□ -0.39
COL9A3-212ENST00000481800 PRR20CP86479 221 aa12.63□□□□□ -0.39
COL9A3-212ENST00000481800 PRR20DP86480 221 aa12.63□□□□□ -0.39
COL9A3-212ENST00000481800 PRR20BP86481 221 aa12.63□□□□□ -0.39
COL9A3-212ENST00000481800 PRR20AP86496 221 aa12.63□□□□□ -0.39
COL9A3-212ENST00000481800 IFITM3Q01628 133 aa12.63□□□□□ -0.39
COL9A3-212ENST00000481800 OPCMLQ14982 345 aa12.63□□□□□ -0.39
COL9A3-212ENST00000481800 FAM222AQ5U5X8 452 aa12.63□□□□□ -0.39
COL9A3-212ENST00000481800 RPUSD4Q96CM3 377 aaKnown RBP12.63□□□□□ -0.39
COL9A3-212ENST00000481800 PFDN5Q99471 154 aa12.63□□□□□ -0.39
COL9A3-212ENST00000481800 ZNF331Q9NQX6 463 aaPredicted RBP12.63□□□□□ -0.39
COL9A3-212ENST00000481800 DKK2Q9UBU2 259 aa12.63□□□□□ -0.39
COL9A3-212ENST00000481800 FGF7P21781 194 aa12.62□□□□□ -0.39
COL9A3-212ENST00000481800 DEFA1P59665 94 aa12.62□□□□□ -0.39
COL9A3-212ENST00000481800 DEFA3P59666 94 aa12.62□□□□□ -0.39
COL9A3-212ENST00000481800 B2MP61769 119 aa12.62□□□□□ -0.39
COL9A3-212ENST00000481800 MORN5Q5VZ52 161 aa12.62□□□□□ -0.39
COL9A3-212ENST00000481800 NIPSNAP3BQ9BS92 247 aa12.62□□□□□ -0.39
COL9A3-212ENST00000481800 SLC25A31Q9H0C2 315 aa12.62□□□□□ -0.39
COL9A3-212ENST00000481800 SLC39A9Q9NUM3 307 aa12.62□□□□□ -0.39
COL9A3-212ENST00000481800 YTHDF2Q9Y5A9 579 aaKnown RBP12.62□□□□□ -0.39
COL9A3-212ENST00000481800 CYCSP99999 105 aaKnown RBP12.61□□□□□ -0.39
COL9A3-212ENST00000481800 LRRC37A5PQ49AS3 106 aa12.61□□□□□ -0.39
COL9A3-212ENST00000481800 BAP18Q8IXM2 172 aa12.61□□□□□ -0.39
COL9A3-212ENST00000481800 NDUFAF3Q9BU61 184 aa12.61□□□□□ -0.39
COL9A3-212ENST00000481800 NMES1Q9C002 83 aa12.61□□□□□ -0.39
COL9A3-212ENST00000481800 PXMP4Q9Y6I8 212 aa12.61□□□□□ -0.39
COL9A3-212ENST00000481800 TRAV12-2A0A075B6T6 113 aa12.6□□□□□ -0.39
COL9A3-212ENST00000481800 TRAV5A0A0B4J249 113 aa12.6□□□□□ -0.39
COL9A3-212ENST00000481800 E5RGE8 158 aa12.6□□□□□ -0.39
COL9A3-212ENST00000481800 H3BTX0 84 aa12.6□□□□□ -0.39
COL9A3-212ENST00000481800 CRXO43186 299 aaPredicted RBP12.6□□□□□ -0.39
COL9A3-212ENST00000481800 MPDU1O75352 247 aa12.6□□□□□ -0.39
COL9A3-212ENST00000481800 GUK1Q16774 197 aa12.6□□□□□ -0.39
COL9A3-212ENST00000481800 CHAC2Q8WUX2 184 aa12.6□□□□□ -0.39
COL9A3-212ENST00000481800 EPPK1P58107 5090 aaKnown RBP12.6□□□□□ -0.39
COL9A3-212ENST00000481800 ZNF705GA8MUZ8 300 aaPredicted RBP12.59□□□□□ -0.39
COL9A3-212ENST00000481800 IGLC2P0DOY2 106 aa12.59□□□□□ -0.39
COL9A3-212ENST00000481800 PRB4P10163 310 aaPredicted RBP12.59□□□□□ -0.39
COL9A3-212ENST00000481800 OR10J6PQ8NGY7 276 aa12.59□□□□□ -0.39
COL9A3-212ENST00000481800 LINC01587Q99440 93 aa12.59□□□□□ -0.39
COL9A3-212ENST00000481800 BATF3Q9NR55 127 aa12.59□□□□□ -0.39
COL9A3-212ENST00000481800 H3BQ15 152 aa12.58□□□□□ -0.4
COL9A3-212ENST00000481800 SLC17A3O00476 420 aa12.58□□□□□ -0.4
COL9A3-212ENST00000481800 SSNA1O43805 119 aa12.58□□□□□ -0.4
COL9A3-212ENST00000481800 HTN3P15516 51 aa12.58□□□□□ -0.4
COL9A3-212ENST00000481800 DAD1P61803 113 aa12.58□□□□□ -0.4
COL9A3-212ENST00000481800 NHLH2Q02577 135 aa12.58□□□□□ -0.4
COL9A3-212ENST00000481800 OXA1LQ15070 435 aa12.58□□□□□ -0.4
COL9A3-212ENST00000481800 TMEM256Q8N2U0 113 aa12.58□□□□□ -0.4
COL9A3-212ENST00000481800 OR5C1Q8NGR4 320 aa12.58□□□□□ -0.4
COL9A3-212ENST00000481800 MARVELD1Q9BSK0 173 aa12.58□□□□□ -0.4
COL9A3-212ENST00000481800 PLA2G2EQ9NZK7 142 aa12.58□□□□□ -0.4
COL9A3-212ENST00000481800 CDKN1BP46527 198 aa12.57□□□□□ -0.4
COL9A3-212ENST00000481800 THAP6Q8TBB0 222 aa12.57□□□□□ -0.4
COL9A3-212ENST00000481800 SAT2Q96F10 170 aaPredicted RBP12.57□□□□□ -0.4
COL9A3-212ENST00000481800 FAM210BQ96KR6 192 aa12.57□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms