RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 LINC00869P0C866 280 aa10.08□□□□□ -0.8
UPF3A-204ENST00000475218 TAS2R30P59541 319 aa10.08□□□□□ -0.8
UPF3A-204ENST00000475218 PSG9Q00887 426 aa10.08□□□□□ -0.8
UPF3A-204ENST00000475218 SPATA31B1PQ5VZV4 182 aa10.08□□□□□ -0.8
UPF3A-204ENST00000475218 COMMD7Q86VX2 200 aa10.08□□□□□ -0.8
UPF3A-204ENST00000475218 RNF182Q8N6D2 247 aa10.08□□□□□ -0.8
UPF3A-204ENST00000475218 GSKIPQ9P0R6 139 aa10.08□□□□□ -0.8
UPF3A-204ENST00000475218 IGHV3OR16-12A0A075B7B8 117 aa10.07□□□□□ -0.8
UPF3A-204ENST00000475218 FNDC10F2Z333 226 aa10.07□□□□□ -0.8
UPF3A-204ENST00000475218 MRPS12O15235 138 aaKnown RBP10.07□□□□□ -0.8
UPF3A-204ENST00000475218 SLC38A11Q08AI6 406 aa10.07□□□□□ -0.8
UPF3A-204ENST00000475218 OR11H4Q8NGC9 324 aa10.07□□□□□ -0.8
UPF3A-204ENST00000475218 OR2T35Q8NGX2 323 aa10.07□□□□□ -0.8
UPF3A-204ENST00000475218 SEC22CQ9BRL7 303 aa10.07□□□□□ -0.8
UPF3A-204ENST00000475218 RPRMQ9NS64 109 aa10.07□□□□□ -0.8
UPF3A-204ENST00000475218 DEFB131BA0A096LNP1 70 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 CRXO43186 299 aaPredicted RBP10.06□□□□□ -0.8
UPF3A-204ENST00000475218 HYPMO75409 117 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 CXCL3P19876 107 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 SMUG1Q53HV7 270 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 SAMD13Q5VXD3 122 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 EBLN2Q6P2I7 272 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 GPR82Q96P67 336 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 RNF126Q9BV68 326 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 NPVFQ9HCQ7 196 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 PLA2G2EQ9NZK7 142 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 HIGD1AQ9Y241 93 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 DNAH2Q9P225 4427 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 SMIM9A6NGZ8 99 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 HMSDA8MTL9 139 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 AMBPP02760 352 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 PRM2P04554 102 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 PRB4P10163 310 aaPredicted RBP10.06□□□□□ -0.8
UPF3A-204ENST00000475218 CNN1P51911 297 aaKnown RBP10.06□□□□□ -0.8
UPF3A-204ENST00000475218 MORN5Q5VZ52 161 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 OR10P1Q8NGE3 313 aa10.06□□□□□ -0.8
UPF3A-204ENST00000475218 A0A087X0K7 114 aa10.05□□□□□ -0.8
UPF3A-204ENST00000475218 KRBOX1C9JBD0 128 aa10.05□□□□□ -0.8
UPF3A-204ENST00000475218 EMP1P54849 157 aa10.05□□□□□ -0.8
UPF3A-204ENST00000475218 SELENOTP62341 195 aa10.05□□□□□ -0.8
UPF3A-204ENST00000475218 OPCMLQ14982 345 aa10.05□□□□□ -0.8
UPF3A-204ENST00000475218 MGST2Q99735 147 aa10.05□□□□□ -0.8
UPF3A-204ENST00000475218 ARL6Q9H0F7 186 aa10.05□□□□□ -0.8
UPF3A-204ENST00000475218 DKK2Q9UBU2 259 aa10.05□□□□□ -0.8
UPF3A-204ENST00000475218 FAT2Q9NYQ8 4349 aa10.05□□□□□ -0.8
UPF3A-204ENST00000475218 OR5G3P0C626 314 aa10.04□□□□□ -0.8
UPF3A-204ENST00000475218 IL15RAQ13261 267 aa10.04□□□□□ -0.8
UPF3A-204ENST00000475218 TEPPQ6URK8 271 aa10.04□□□□□ -0.8
UPF3A-204ENST00000475218 IGF2BP2-AS1Q96M15 143 aa10.04□□□□□ -0.8
UPF3A-204ENST00000475218 RFNGQ9Y644 331 aa10.04□□□□□ -0.8
UPF3A-204ENST00000475218 M0R2Z0 102 aa10.03□□□□□ -0.8
UPF3A-204ENST00000475218 AGPAT2O15120 278 aa10.03□□□□□ -0.8
UPF3A-204ENST00000475218 MPC2O95563 127 aa10.03□□□□□ -0.8
UPF3A-204ENST00000475218 SPART-AS1P0CW21 52 aa10.03□□□□□ -0.8
UPF3A-204ENST00000475218 FGL1Q08830 312 aa10.03□□□□□ -0.8
UPF3A-204ENST00000475218 SPINK13Q1W4C9 94 aa10.03□□□□□ -0.8
UPF3A-204ENST00000475218 FAM222AQ5U5X8 452 aa10.03□□□□□ -0.8
UPF3A-204ENST00000475218 TMEM37Q8WXS4 190 aa10.03□□□□□ -0.8
UPF3A-204ENST00000475218 ARV1Q9H2C2 271 aa10.03□□□□□ -0.8
UPF3A-204ENST00000475218 DNAH17Q9UFH2 4485 aa10.03□□□□□ -0.8
UPF3A-204ENST00000475218 TMEM189A5PLL7 270 aa10.03□□□□□ -0.8
UPF3A-204ENST00000475218 L7N2F9 121 aa10.03□□□□□ -0.8
UPF3A-204ENST00000475218 RPL7P18124 248 aaKnown RBP10.03□□□□□ -0.8
UPF3A-204ENST00000475218 GGACTQ9BVM4 153 aa10.03□□□□□ -0.8
UPF3A-204ENST00000475218 MGAT4CQ9UBM8 478 aa10.03□□□□□ -0.8
UPF3A-204ENST00000475218 GOLT1BQ9Y3E0 138 aa10.03□□□□□ -0.8
UPF3A-204ENST00000475218 LOC102723971A0A1B0GUV8 181 aa10.02□□□□□ -0.81
UPF3A-204ENST00000475218 G3V3Q6 166 aa10.02□□□□□ -0.81
UPF3A-204ENST00000475218 SNRPCP09234 159 aaKnown RBP10.02□□□□□ -0.81
UPF3A-204ENST00000475218 EIF4E3Q8N5X7 224 aaKnown RBP10.02□□□□□ -0.81
UPF3A-204ENST00000475218 LSM5Q9Y4Y9 91 aaKnown RBP10.02□□□□□ -0.81
UPF3A-204ENST00000475218 YTHDF2Q9Y5A9 579 aaKnown RBP10.02□□□□□ -0.81
UPF3A-204ENST00000475218 FAM24AA6NFZ4 105 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 FAM25EA8MYX2 175 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 ZNF546Q86UE3 836 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 BAP18Q8IXM2 172 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 C12orf45Q8N5I9 185 aaPredicted RBP10.01□□□□□ -0.81
UPF3A-204ENST00000475218 ZNF738Q8NE65 137 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 HERC2O95714 4834 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 PLAC8L1A1L4L8 177 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 CST7O76096 145 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 HBE1P02100 147 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 S100A11P31949 105 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 PSG3Q16557 428 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 FAM122CQ6P4D5 195 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 LINC00305Q7Z4B0 112 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 OR8A1Q8NGG7 326 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 C2orf50Q96LR7 162 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 NIPSNAP3BQ9BS92 247 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 PRELID1Q9Y255 219 aa10.01□□□□□ -0.81
UPF3A-204ENST00000475218 TRAV12-2A0A075B6T6 113 aa10□□□□□ -0.81
UPF3A-204ENST00000475218 IGSF23A1L1A6 192 aa10□□□□□ -0.81
UPF3A-204ENST00000475218 C5orf51A6NDU8 294 aa10□□□□□ -0.81
UPF3A-204ENST00000475218 ZNF705GA8MUZ8 300 aaPredicted RBP10□□□□□ -0.81
UPF3A-204ENST00000475218 SLC17A3O00476 420 aa10□□□□□ -0.81
UPF3A-204ENST00000475218 GOSR2O14653 212 aa10□□□□□ -0.81
UPF3A-204ENST00000475218 DUSP14O95147 198 aaKnown RBP10□□□□□ -0.81
UPF3A-204ENST00000475218 S100A7P31151 101 aa10□□□□□ -0.81
UPF3A-204ENST00000475218 VWC2Q2TAL6 325 aa10□□□□□ -0.81
UPF3A-204ENST00000475218 PXDC1Q5TGL8 231 aa10□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 54.4 ms