RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 LINC00305Q7Z4B0 112 aa13.17□□□□□ -0.3
COL7A1-209ENST00000474432 BAP18Q8IXM2 172 aa13.17□□□□□ -0.3
COL7A1-209ENST00000474432 C12orf45Q8N5I9 185 aaPredicted RBP13.17□□□□□ -0.3
COL7A1-209ENST00000474432 ZNF738Q8NE65 137 aa13.17□□□□□ -0.3
COL7A1-209ENST00000474432 TEX48A0A1B0GUV7 120 aa13.16□□□□□ -0.3
COL7A1-209ENST00000474432 PLAC8L1A1L4L8 177 aa13.16□□□□□ -0.3
COL7A1-209ENST00000474432 FAM24AA6NFZ4 105 aa13.16□□□□□ -0.3
COL7A1-209ENST00000474432 ZNF705GA8MUZ8 300 aaPredicted RBP13.16□□□□□ -0.3
COL7A1-209ENST00000474432 FAM25EA8MYX2 175 aa13.16□□□□□ -0.3
COL7A1-209ENST00000474432 SNRPCP09234 159 aaKnown RBP13.16□□□□□ -0.3
COL7A1-209ENST00000474432 H2AFB2P0C5Z0 115 aa13.16□□□□□ -0.3
COL7A1-209ENST00000474432 ZNF846Q147U1 533 aa13.16□□□□□ -0.3
COL7A1-209ENST00000474432 POM121L12Q8N7R1 296 aa13.16□□□□□ -0.3
COL7A1-209ENST00000474432 C2orf50Q96LR7 162 aa13.16□□□□□ -0.3
COL7A1-209ENST00000474432 ZNF331Q9NQX6 463 aaPredicted RBP13.16□□□□□ -0.3
COL7A1-209ENST00000474432 TRAV12-2A0A075B6T6 113 aa13.15□□□□□ -0.3
COL7A1-209ENST00000474432 L7N2F9 121 aa13.15□□□□□ -0.3
COL7A1-209ENST00000474432 CST7O76096 145 aa13.15□□□□□ -0.3
COL7A1-209ENST00000474432 AZU1P20160 251 aa13.15□□□□□ -0.3
COL7A1-209ENST00000474432 VAMP2P63027 116 aa13.15□□□□□ -0.3
COL7A1-209ENST00000474432 HIST1H1AQ02539 215 aaPredicted RBP13.15□□□□□ -0.3
COL7A1-209ENST00000474432 VWC2Q2TAL6 325 aa13.15□□□□□ -0.3
COL7A1-209ENST00000474432 WDR83OSQ9Y284 106 aa13.15□□□□□ -0.3
COL7A1-209ENST00000474432 C5orf51A6NDU8 294 aa13.14□□□□□ -0.31
COL7A1-209ENST00000474432 BOLA2-SMG1P6H3BVE0 249 aa13.14□□□□□ -0.31
COL7A1-209ENST00000474432 SLC17A3O00476 420 aa13.14□□□□□ -0.31
COL7A1-209ENST00000474432 INSP01308 110 aa13.14□□□□□ -0.31
COL7A1-209ENST00000474432 P0DMU3 169 aa13.14□□□□□ -0.31
COL7A1-209ENST00000474432 FAM231AP0DMU4 169 aa13.14□□□□□ -0.31
COL7A1-209ENST00000474432 FAM231CP0DMU5 169 aa13.14□□□□□ -0.31
COL7A1-209ENST00000474432 IGLC2P0DOY2 106 aa13.14□□□□□ -0.31
COL7A1-209ENST00000474432 OPCMLQ14982 345 aa13.14□□□□□ -0.31
COL7A1-209ENST00000474432 LINC00299Q6ZSB3 139 aa13.14□□□□□ -0.31
COL7A1-209ENST00000474432 FAM210BQ96KR6 192 aa13.14□□□□□ -0.31
COL7A1-209ENST00000474432 TMEM208Q9BTX3 173 aa13.14□□□□□ -0.31
COL7A1-209ENST00000474432 HERC2O95714 4834 aa13.13□□□□□ -0.31
COL7A1-209ENST00000474432 IGSF23A1L1A6 192 aa13.13□□□□□ -0.31
COL7A1-209ENST00000474432 H3BQ15 152 aa13.13□□□□□ -0.31
COL7A1-209ENST00000474432 CXCL2P19875 107 aa13.13□□□□□ -0.31
COL7A1-209ENST00000474432 CAMLGP49069 296 aa13.13□□□□□ -0.31
COL7A1-209ENST00000474432 BCAP31P51572 246 aa13.13□□□□□ -0.31
COL7A1-209ENST00000474432 CAV2P51636 162 aa13.13□□□□□ -0.31
COL7A1-209ENST00000474432 RAB32Q13637 225 aa13.13□□□□□ -0.31
COL7A1-209ENST00000474432 MIC13Q5XKP0 118 aa13.13□□□□□ -0.31
COL7A1-209ENST00000474432 NRARPQ7Z6K4 114 aa13.13□□□□□ -0.31
COL7A1-209ENST00000474432 S100A7AQ86SG5 101 aa13.13□□□□□ -0.31
COL7A1-209ENST00000474432 RPUSD4Q96CM3 377 aaKnown RBP13.13□□□□□ -0.31
COL7A1-209ENST00000474432 SAT2Q96F10 170 aaPredicted RBP13.13□□□□□ -0.31
COL7A1-209ENST00000474432 NACAE9PAV3 2078 aa13.12□□□□□ -0.31
COL7A1-209ENST00000474432 TRAV5A0A0B4J249 113 aa13.12□□□□□ -0.31
COL7A1-209ENST00000474432 PRAC2D3DTV9 90 aa13.12□□□□□ -0.31
COL7A1-209ENST00000474432 H3BTX0 84 aa13.12□□□□□ -0.31
COL7A1-209ENST00000474432 COX7A2P2O60397 106 aa13.12□□□□□ -0.31
COL7A1-209ENST00000474432 TSPOP30536 169 aa13.12□□□□□ -0.31
COL7A1-209ENST00000474432 ASAH1Q13510 395 aa13.12□□□□□ -0.31
COL7A1-209ENST00000474432 LCN15Q6UWW0 184 aa13.12□□□□□ -0.31
COL7A1-209ENST00000474432 TMEM252Q8N6L7 170 aa13.12□□□□□ -0.31
COL7A1-209ENST00000474432 LYRM2Q9NU23 88 aaPredicted RBP13.12□□□□□ -0.31
COL7A1-209ENST00000474432 FAM240BA0A1B0GVZ2 78 aa13.11□□□□□ -0.31
COL7A1-209ENST00000474432 HTN3P15516 51 aa13.11□□□□□ -0.31
COL7A1-209ENST00000474432 RHOBP62745 196 aa13.11□□□□□ -0.31
COL7A1-209ENST00000474432 KIR3DS1Q14943 382 aa13.11□□□□□ -0.31
COL7A1-209ENST00000474432 C10orf113Q5VZT2 155 aa13.11□□□□□ -0.31
COL7A1-209ENST00000474432 BPIFA4PQ86YQ2 179 aa13.11□□□□□ -0.31
COL7A1-209ENST00000474432 LRRC20Q8TCA0 184 aa13.11□□□□□ -0.31
COL7A1-209ENST00000474432 SLC50A1Q9BRV3 221 aa13.11□□□□□ -0.31
COL7A1-209ENST00000474432 DNAJC4Q9NNZ3 241 aa13.11□□□□□ -0.31
COL7A1-209ENST00000474432 UQCC1Q9NVA1 299 aa13.11□□□□□ -0.31
COL7A1-209ENST00000474432 RNF24Q9Y225 148 aa13.11□□□□□ -0.31
COL7A1-209ENST00000474432 SULT1A1P50225 295 aa13.1□□□□□ -0.31
COL7A1-209ENST00000474432 B2MP61769 119 aa13.1□□□□□ -0.31
COL7A1-209ENST00000474432 DAD1P61803 113 aa13.1□□□□□ -0.31
COL7A1-209ENST00000474432 IFITM3Q01628 133 aa13.1□□□□□ -0.31
COL7A1-209ENST00000474432 FCN2Q15485 313 aa13.1□□□□□ -0.31
COL7A1-209ENST00000474432 TMEM88Q6PEY1 159 aa13.1□□□□□ -0.31
COL7A1-209ENST00000474432 CHAC2Q8WUX2 184 aa13.1□□□□□ -0.31
COL7A1-209ENST00000474432 LYRM9A8MSI8 78 aa13.09□□□□□ -0.31
COL7A1-209ENST00000474432 RPL29P47914 159 aaKnown RBP13.09□□□□□ -0.31
COL7A1-209ENST00000474432 S100A10P60903 97 aa13.09□□□□□ -0.31
COL7A1-209ENST00000474432 PARD6GQ9BYG4 376 aaPredicted RBP13.09□□□□□ -0.31
COL7A1-209ENST00000474432 A0A1B0GVY2 172 aa13.08□□□□□ -0.32
COL7A1-209ENST00000474432 RTL8CO15255 209 aa13.08□□□□□ -0.32
COL7A1-209ENST00000474432 PVALBP20472 110 aaPredicted RBP13.08□□□□□ -0.32
COL7A1-209ENST00000474432 S100A11P31949 105 aa13.08□□□□□ -0.32
COL7A1-209ENST00000474432 CDKN1BP46527 198 aa13.08□□□□□ -0.32
COL7A1-209ENST00000474432 TAS2R60P59551 318 aa13.08□□□□□ -0.32
COL7A1-209ENST00000474432 TMEM256Q8N2U0 113 aa13.08□□□□□ -0.32
COL7A1-209ENST00000474432 S100ZQ8WXG8 99 aa13.08□□□□□ -0.32
COL7A1-209ENST00000474432 LINC01587Q99440 93 aa13.08□□□□□ -0.32
COL7A1-209ENST00000474432 SLC39A9Q9NUM3 307 aa13.08□□□□□ -0.32
COL7A1-209ENST00000474432 ZNF586Q9NXT0 402 aa13.08□□□□□ -0.32
COL7A1-209ENST00000474432 KIAA1109Q2LD37 5005 aa13.07□□□□□ -0.32
COL7A1-209ENST00000474432 UBE2L5PA0A1B0GUS4 154 aa13.07□□□□□ -0.32
COL7A1-209ENST00000474432 A6NHS1 94 aa13.07□□□□□ -0.32
COL7A1-209ENST00000474432 M0R2N4 97 aa13.07□□□□□ -0.32
COL7A1-209ENST00000474432 RAB31Q13636 194 aa13.07□□□□□ -0.32
COL7A1-209ENST00000474432 MZT2BQ6NZ67 158 aa13.07□□□□□ -0.32
COL7A1-209ENST00000474432 Q6ZR54 194 aa13.07□□□□□ -0.32
COL7A1-209ENST00000474432 Q6ZRG5 221 aa13.07□□□□□ -0.32
COL7A1-209ENST00000474432 UPK1BO75841 260 aa13.06□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 79.9 ms