RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 SERF2P84101 59 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 RELQ04864 619 aaPredicted RBP3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 KLK9Q2XQG4 91 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 FAM106AQ4KMX7 169 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 TMEM41BQ5BJD5 291 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 FAM78BQ5VT40 261 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 C10orf113Q5VZT2 155 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 LEMD1Q68G75 181 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 SPSB3Q6PJ21 355 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 LCN15Q6UWW0 184 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 PATE2Q6UY27 113 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 C12orf54Q6X4T0 127 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 ZNF600Q6ZNG1 722 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 MIR17HGQ75NE6 70 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 OR1L4Q8NGR5 311 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 STOML3Q8TAV4 291 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 SFT2D1Q8WV19 159 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 UHRF2Q96PU4 802 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 PSMG3Q9BT73 122 aaPredicted RBP3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 C19orf24Q9BVV8 132 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 PARD6GQ9BYG4 376 aaPredicted RBP3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 ACTR3CQ9C0K3 210 aaPredicted RBP3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 SLC25A22Q9H936 323 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 RPRMQ9NS64 109 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 RABAC1Q9UI14 185 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 KLK9Q9UKQ9 250 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 HIGD1AQ9Y241 93 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 TIMM9Q9Y5J7 89 aa3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 TSSC4Q9Y5U2 329 aaPredicted RBP3.11□□□□□ -1.91
TMEM39A-204ENST00000468545 CUBNO60494 3623 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 MTORP42345 2549 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 IGKV3-7A0A075B6H7 116 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 IGLV5-52A0A0A0MRZ9 124 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 WI2-2373I1.2A0A1W2PRP0 233 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 UMAD1C9J7I0 102 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 H3BTX0 84 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 I3L521 148 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 CCL24O00175 119 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 NDUFA4O00483 81 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 GAGE7O76087 117 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 APOHP02749 345 aaPredicted RBP3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 GAGE12FP0CL80 117 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 GAGE12GP0CL81 117 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 GAGE12IP0CL82 117 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 NPPCP23582 126 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 CDC34P49427 236 aaPredicted RBP3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 RHOBP62745 196 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 GAGE1Q13065 139 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 GAGE4Q13068 117 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 USF2Q15853 346 aaPredicted RBP3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 UNQ9165/PRO28630Q6UXU0 137 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 ZNF767PQ75MW2 155 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 SSX7Q7RTT5 188 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 LINC00305Q7Z4B0 112 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 RPP25LQ8N5L8 163 aaKnown RBP3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 C3orf56Q8N813 242 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 C4orf3Q8WVX3 66 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 TMEM37Q8WXS4 190 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 TMEM158Q8WZ71 300 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 PHYHIPLQ96FC7 376 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 METTL26Q96S19 204 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 HRH4Q9H3N8 390 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 KCNIP2Q9NS61 270 aa3.1□□□□□ -1.91
TMEM39A-204ENST00000468545 MXRA5Q9NR99 2828 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 CTXND1A0A1B0GTU2 59 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 MAP1LC3B2A6NCE7 125 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 ZNF98A6NK75 572 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 OR7C2O60412 319 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 C8orf88P0DMB2 117 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 IGHV4-30-4P0DP06 118 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 PYYP10082 97 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 PRB4P10163 310 aaPredicted RBP3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 ZP3P21754 424 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 MYCNOSP40205 109 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 TFPI2P48307 235 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 RAB5CP51148 216 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 UBE2G2P60604 165 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 CCL20P78556 96 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 ZNF726P1Q15940 193 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 IL34Q6ZMJ4 242 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 PQLC2Q6ZP29 291 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 NDUFA11Q86Y39 141 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 GPHB5Q86YW7 130 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 OR8I2Q8N0Y5 310 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 LRRC20Q8TCA0 184 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 MYOZ3Q8TDC0 251 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 GATAD1Q8WUU5 269 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 BLNKQ8WV28 456 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 DLX4Q92988 240 aaPredicted RBP3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 NARS2Q96I59 477 aaKnown RBP3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 PFDN5Q99471 154 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 RNF2Q99496 336 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 PAXXQ9BUH6 204 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 SCRT1Q9BWW7 348 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 SLC25A39Q9BZJ4 359 aaPredicted RBP3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 MAP1LC3BQ9GZQ8 125 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 OR51M1Q9H341 326 aa3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 TECRQ9NZ01 308 aaKnown RBP3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 MRPL27Q9P0M9 148 aaKnown RBP3.09□□□□□ -1.91
TMEM39A-204ENST00000468545 FUT9Q9Y231 359 aa3.09□□□□□ -1.91
Retrieved 100 of 20,778 RNA–protein pairs in 91.9 ms