RNA–Protein interactions for RNA: ENST00000466342.1

SQSTM1-206, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 808 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-206ENST00000466342 DYNC1H1Q14204 4646 aaKnown RBP8.75□□□□□ -1.01
SQSTM1-206ENST00000466342 FAT2Q9NYQ8 4349 aa8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 A0A087X0K7 114 aa8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 A0A1B0GVY2 172 aa8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 UBE2CO00762 179 aa8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 MRPS12O15235 138 aaKnown RBP8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 ATF4P18848 351 aaPredicted RBP8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 PSMB3P49720 205 aa8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 SNRPD3P62318 126 aaKnown RBP8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 ZNF345Q14585 488 aa8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 ZNF124Q15973 351 aa8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 FFAR4Q5NUL3 377 aa8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 FAM78BQ5VT40 261 aa8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 Q6ZWC4 215 aa8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 BPIFA4PQ86YQ2 179 aa8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 TCTE3Q8IZS6 198 aa8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 C17orf77Q96MU5 243 aa8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 OVOL2Q9BRP0 275 aa8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 TP53TG1Q9Y2A0 90 aa8.74□□□□□ -1.01
SQSTM1-206ENST00000466342 AGRNO00468 2067 aa8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 BORCS7-ASMTA0A0B4J1R7 106 aa8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 KIR2DL5BA0A0G2JN68 375 aa8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 KIR2DL5BA0A0G2JPC4 375 aa8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 ISLRO14498 428 aa8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 TAAR5O14804 337 aa8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 ID1P41134 155 aa8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 PSMG4Q5JS54 123 aa8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 RPL7L1Q6DKI1 246 aaKnown RBP8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 LINC00336Q6ZUF6 198 aa8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 KIR2DL5AQ8N109 375 aa8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 HSD17B11Q8NBQ5 300 aa8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 KIR2DL5BQ8NHK3 375 aa8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 PSMG3Q9BT73 122 aaPredicted RBP8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 MRPL32Q9BYC8 188 aaKnown RBP8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 PLA2G2EQ9NZK7 142 aa8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 RFNGQ9Y644 331 aa8.73□□□□□ -1.01
SQSTM1-206ENST00000466342 DNAH17Q9UFH2 4485 aa8.72□□□□□ -1.01
SQSTM1-206ENST00000466342 DNAH2Q9P225 4427 aa8.72□□□□□ -1.01
SQSTM1-206ENST00000466342 TRAV5A0A0B4J249 113 aa8.72□□□□□ -1.01
SQSTM1-206ENST00000466342 CXCL2P19875 107 aa8.72□□□□□ -1.01
SQSTM1-206ENST00000466342 ATP6V0CP27449 155 aa8.72□□□□□ -1.01
SQSTM1-206ENST00000466342 AKAP14Q86UN6 197 aa8.72□□□□□ -1.01
SQSTM1-206ENST00000466342 KCNRGQ8N5I3 272 aa8.72□□□□□ -1.01
SQSTM1-206ENST00000466342 OR2G3Q8NGZ4 309 aa8.72□□□□□ -1.01
SQSTM1-206ENST00000466342 C16orf92Q96LL3 132 aa8.72□□□□□ -1.01
SQSTM1-206ENST00000466342 A0A0D9SG52 128 aa8.71□□□□□ -1.02
SQSTM1-206ENST00000466342 A0A1B0GVG6 124 aa8.71□□□□□ -1.02
SQSTM1-206ENST00000466342 SPRY2O43597 315 aa8.71□□□□□ -1.02
SQSTM1-206ENST00000466342 IGLC2P0DOY2 106 aa8.71□□□□□ -1.02
SQSTM1-206ENST00000466342 M6PRP20645 277 aa8.71□□□□□ -1.02
SQSTM1-206ENST00000466342 RHOBP62745 196 aa8.71□□□□□ -1.02
SQSTM1-206ENST00000466342 ACOT6Q3I5F7 207 aaPredicted RBP8.71□□□□□ -1.02
SQSTM1-206ENST00000466342 LCN15Q6UWW0 184 aa8.71□□□□□ -1.02
SQSTM1-206ENST00000466342 MIR17HGQ75NE6 70 aa8.71□□□□□ -1.02
SQSTM1-206ENST00000466342 GNPNAT1Q96EK6 184 aaPredicted RBP8.71□□□□□ -1.02
SQSTM1-206ENST00000466342 LINC00052Q96N35 136 aa8.71□□□□□ -1.02
SQSTM1-206ENST00000466342 ARPC5LQ9BPX5 153 aa8.71□□□□□ -1.02
SQSTM1-206ENST00000466342 SLC25A2Q9BXI2 301 aa8.71□□□□□ -1.02
SQSTM1-206ENST00000466342 HRH4Q9H3N8 390 aa8.71□□□□□ -1.02
SQSTM1-206ENST00000466342 TMEM14CQ9P0S9 112 aa8.71□□□□□ -1.02
SQSTM1-206ENST00000466342 FUT9Q9Y231 359 aa8.71□□□□□ -1.02
SQSTM1-206ENST00000466342 PKD1P98161 4303 aa8.7□□□□□ -1.02
SQSTM1-206ENST00000466342 TRAV8-2A0A0B4J237 113 aa8.7□□□□□ -1.02
SQSTM1-206ENST00000466342 A0A0J9YWU9 116 aa8.7□□□□□ -1.02
SQSTM1-206ENST00000466342 KNCNA6PVL3 124 aa8.7□□□□□ -1.02
SQSTM1-206ENST00000466342 C1QBP02746 253 aa8.7□□□□□ -1.02
SQSTM1-206ENST00000466342 RPL35AP18077 110 aaKnown RBP8.7□□□□□ -1.02
SQSTM1-206ENST00000466342 SERF2P84101 59 aa8.7□□□□□ -1.02
SQSTM1-206ENST00000466342 GUK1Q16774 197 aa8.7□□□□□ -1.02
SQSTM1-206ENST00000466342 SPATA31B1PQ5VZV4 182 aa8.7□□□□□ -1.02
SQSTM1-206ENST00000466342 STHQ8IWL8 128 aa8.7□□□□□ -1.02
SQSTM1-206ENST00000466342 FAM167A-AS1Q96KT0 104 aa8.7□□□□□ -1.02
SQSTM1-206ENST00000466342 SLC50A1Q9BRV3 221 aa8.7□□□□□ -1.02
SQSTM1-206ENST00000466342 SH3BGRL3Q9H299 93 aa8.7□□□□□ -1.02
SQSTM1-206ENST00000466342 CYTL1Q9NRR1 136 aa8.7□□□□□ -1.02
SQSTM1-206ENST00000466342 HERC1Q15751 4861 aa8.7□□□□□ -1.02
SQSTM1-206ENST00000466342 KANTRA0A1W2PQU2 76 aa8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 H3BQ15 152 aa8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 SNRPCP09234 159 aaKnown RBP8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 PYYP10082 97 aa8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 RAB2AP61019 212 aa8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 ACTL10Q5JWF8 245 aa8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 TRPT1Q86TN4 253 aaKnown RBP8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 OR10G4Q8NGN3 311 aa8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 OR10G9Q8NGN4 311 aa8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 OR10G7Q8NGN6 311 aa8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 LRRC20Q8TCA0 184 aa8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 RNF183Q96D59 192 aa8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 C20orf173Q96LM9 149 aa8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 CSTL1Q9H114 145 aa8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 SAV1Q9H4B6 383 aaPredicted RBP8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 ZNF331Q9NQX6 463 aaPredicted RBP8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 RPRMQ9NS64 109 aa8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 ZNF586Q9NXT0 402 aa8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 DNAH11Q96DT5 4516 aa8.69□□□□□ -1.02
SQSTM1-206ENST00000466342 TRBV19A0A075B6N1 114 aa8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 A0A1W2PPV4 95 aa8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 H3BTX0 84 aa8.68□□□□□ -1.02
SQSTM1-206ENST00000466342 SLC17A3O00476 420 aa8.68□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 35.8 ms