RNA–Protein interactions for RNA: ENST00000464635.1

USP54-209, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 531 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-209ENST00000464635 SERTM2A0A1B0GWG4 89 aa9.03□□□□□ -0.96
USP54-209ENST00000464635 FBLL1A6NHQ2 334 aaKnown RBP9.03□□□□□ -0.96
USP54-209ENST00000464635 K7EMT4 169 aa9.03□□□□□ -0.96
USP54-209ENST00000464635 BUB3O43684 328 aa9.03□□□□□ -0.96
USP54-209ENST00000464635 GGCTO75223 188 aaKnown RBP9.03□□□□□ -0.96
USP54-209ENST00000464635 NPPCP23582 126 aa9.03□□□□□ -0.96
USP54-209ENST00000464635 ATP5G3P48201 142 aa9.03□□□□□ -0.96
USP54-209ENST00000464635 SUMO1P63165 101 aaKnown RBP9.03□□□□□ -0.96
USP54-209ENST00000464635 KIAA0141Q14154 515 aaPredicted RBP9.03□□□□□ -0.96
USP54-209ENST00000464635 ATRAIDQ6UW56 229 aa9.03□□□□□ -0.96
USP54-209ENST00000464635 GPHB5Q86YW7 130 aa9.03□□□□□ -0.96
USP54-209ENST00000464635 C5orf17Q8NAS9 161 aa9.03□□□□□ -0.96
USP54-209ENST00000464635 C2CD4CQ8TF44 421 aa9.03□□□□□ -0.96
USP54-209ENST00000464635 ANAPC16Q96DE5 110 aa9.03□□□□□ -0.96
USP54-209ENST00000464635 UBE2E2Q96LR5 201 aa9.03□□□□□ -0.96
USP54-209ENST00000464635 NOL4LQ96MY1 436 aaPredicted RBP9.03□□□□□ -0.96
USP54-209ENST00000464635 MS4A10Q96PG2 267 aa9.03□□□□□ -0.96
USP54-209ENST00000464635 OTORQ9NRC9 128 aa9.03□□□□□ -0.96
USP54-209ENST00000464635 KLF12Q9Y4X4 402 aa9.03□□□□□ -0.96
USP54-209ENST00000464635 TRBV19A0A075B6N1 114 aa9.02□□□□□ -0.97
USP54-209ENST00000464635 A0A087X0K7 114 aa9.02□□□□□ -0.97
USP54-209ENST00000464635 HELTA6NFD8 242 aa9.02□□□□□ -0.97
USP54-209ENST00000464635 GGTLC3B5MD39 225 aa9.02□□□□□ -0.97
USP54-209ENST00000464635 DNASE2O00115 360 aaPredicted RBP9.02□□□□□ -0.97
USP54-209ENST00000464635 TSPAN4O14817 238 aa9.02□□□□□ -0.97
USP54-209ENST00000464635 NDUFB4O95168 129 aa9.02□□□□□ -0.97
USP54-209ENST00000464635 PF4V1P10720 104 aa9.02□□□□□ -0.97
USP54-209ENST00000464635 IGLL1P15814 213 aa9.02□□□□□ -0.97
USP54-209ENST00000464635 ARL3P36405 182 aa9.02□□□□□ -0.97
USP54-209ENST00000464635 UBE2G2P60604 165 aa9.02□□□□□ -0.97
USP54-209ENST00000464635 PSG9Q00887 426 aa9.02□□□□□ -0.97
USP54-209ENST00000464635 KHDC1LQ5JSQ8 128 aa9.02□□□□□ -0.97
USP54-209ENST00000464635 METTL26Q96S19 204 aa9.02□□□□□ -0.97
USP54-209ENST00000464635 AURKAIP1Q9NWT8 199 aaPredicted RBP9.02□□□□□ -0.97
USP54-209ENST00000464635 PEF1Q9UBV8 284 aaKnown RBP9.02□□□□□ -0.97
USP54-209ENST00000464635 DNAH3Q8TD57 4116 aa9.01□□□□□ -0.97
USP54-209ENST00000464635 A0A1W2PS18 150 aa9.01□□□□□ -0.97
USP54-209ENST00000464635 M0R036 132 aa9.01□□□□□ -0.97
USP54-209ENST00000464635 PPP1R2P9O14990 202 aa9.01□□□□□ -0.97
USP54-209ENST00000464635 EIF3GO75821 320 aaKnown RBP eCLIP9.01□□□□□ -0.97
USP54-209ENST00000464635 MT-ND4LP03901 98 aa9.01□□□□□ -0.97
USP54-209ENST00000464635 OR10J4P0C629 311 aa9.01□□□□□ -0.97
USP54-209ENST00000464635 PYYP10082 97 aa9.01□□□□□ -0.97
USP54-209ENST00000464635 CD33P20138 364 aa9.01□□□□□ -0.97
USP54-209ENST00000464635 ZNF329Q86UD4 541 aa9.01□□□□□ -0.97
USP54-209ENST00000464635 C15orf54Q8N8G6 183 aa9.01□□□□□ -0.97
USP54-209ENST00000464635 OR4X2Q8NGF9 303 aa9.01□□□□□ -0.97
USP54-209ENST00000464635 ELOVL1Q9BW60 279 aa9.01□□□□□ -0.97
USP54-209ENST00000464635 KLK15Q9H2R5 256 aa9.01□□□□□ -0.97
USP54-209ENST00000464635 ZNF586Q9NXT0 402 aa9.01□□□□□ -0.97
USP54-209ENST00000464635 LINC00527Q9UJ94 153 aa9.01□□□□□ -0.97
USP54-209ENST00000464635 EPDR1Q9UM22 224 aa9.01□□□□□ -0.97
USP54-209ENST00000464635 TSSC4Q9Y5U2 329 aaPredicted RBP9.01□□□□□ -0.97
USP54-209ENST00000464635 PF4P02776 101 aa9□□□□□ -0.97
USP54-209ENST00000464635 CDX1P47902 265 aaPredicted RBP9□□□□□ -0.97
USP54-209ENST00000464635 RPL23P62829 140 aaKnown RBP9□□□□□ -0.97
USP54-209ENST00000464635 BTN1A1Q13410 526 aa9□□□□□ -0.97
USP54-209ENST00000464635 TMEM183BQ1AE95 376 aa9□□□□□ -0.97
USP54-209ENST00000464635 FAM106AQ4KMX7 169 aa9□□□□□ -0.97
USP54-209ENST00000464635 SAMD13Q5VXD3 122 aa9□□□□□ -0.97
USP54-209ENST00000464635 C18orf65Q6ZTR6 163 aa9□□□□□ -0.97
USP54-209ENST00000464635 MRAPQ8TCY5 172 aa9□□□□□ -0.97
USP54-209ENST00000464635 IMMP2LQ96T52 175 aa9□□□□□ -0.97
USP54-209ENST00000464635 ATG101Q9BSB4 218 aa9□□□□□ -0.97
USP54-209ENST00000464635 RPS10P5Q9NQ39 176 aa9□□□□□ -0.97
USP54-209ENST00000464635 BIN3Q9NQY0 253 aa9□□□□□ -0.97
USP54-209ENST00000464635 SCO2A0A1W2PP80 73 aa8.99□□□□□ -0.97
USP54-209ENST00000464635 PGPA6NDG6 321 aa8.99□□□□□ -0.97
USP54-209ENST00000464635 LGALS9O00182 355 aa8.99□□□□□ -0.97
USP54-209ENST00000464635 IGHV3-23P01764 117 aa8.99□□□□□ -0.97
USP54-209ENST00000464635 BMI1P35226 326 aa8.99□□□□□ -0.97
USP54-209ENST00000464635 GALR1P47211 349 aa8.99□□□□□ -0.97
USP54-209ENST00000464635 CNN1P51911 297 aaKnown RBP8.99□□□□□ -0.97
USP54-209ENST00000464635 CEBPGP53567 150 aa8.99□□□□□ -0.97
USP54-209ENST00000464635 REC114Q7Z4M0 266 aa8.99□□□□□ -0.97
USP54-209ENST00000464635 LINC01551Q86U37 167 aa8.99□□□□□ -0.97
USP54-209ENST00000464635 OR8I2Q8N0Y5 310 aa8.99□□□□□ -0.97
USP54-209ENST00000464635 WFDC9Q8NEX5 89 aa8.99□□□□□ -0.97
USP54-209ENST00000464635 MRPL53Q96EL3 112 aaKnown RBP8.99□□□□□ -0.97
USP54-209ENST00000464635 BTF3L4Q96K17 158 aa8.99□□□□□ -0.97
USP54-209ENST00000464635 SLC50A1Q9BRV3 221 aa8.99□□□□□ -0.97
USP54-209ENST00000464635 Q9H3A6 140 aa8.99□□□□□ -0.97
USP54-209ENST00000464635 S4R3C0 116 aa8.99□□□□□ -0.97
USP54-209ENST00000464635 K7EQM0 130 aa8.98□□□□□ -0.97
USP54-209ENST00000464635 PEX7O00628 323 aa8.98□□□□□ -0.97
USP54-209ENST00000464635 LGALS1P09382 135 aaKnown RBP8.98□□□□□ -0.97
USP54-209ENST00000464635 RPL35P42766 123 aaKnown RBP8.98□□□□□ -0.97
USP54-209ENST00000464635 RANP62826 216 aaKnown RBP8.98□□□□□ -0.97
USP54-209ENST00000464635 RNF212Q495C1 297 aa8.98□□□□□ -0.97
USP54-209ENST00000464635 C16orf54Q6UWD8 224 aa8.98□□□□□ -0.97
USP54-209ENST00000464635 SIGLEC15Q6ZMC9 328 aa8.98□□□□□ -0.97
USP54-209ENST00000464635 GRAMD2BQ96HH9 432 aa8.98□□□□□ -0.97
USP54-209ENST00000464635 FMC1Q96HJ9 113 aa8.98□□□□□ -0.97
USP54-209ENST00000464635 AAMDCQ9H7C9 122 aa8.98□□□□□ -0.97
USP54-209ENST00000464635 SCO1O75880 301 aa8.97□□□□□ -0.97
USP54-209ENST00000464635 TCRAP04437 139 aa8.97□□□□□ -0.97
USP54-209ENST00000464635 AKR1C3P42330 323 aa8.97□□□□□ -0.97
USP54-209ENST00000464635 ZNF674Q2M3X9 581 aa8.97□□□□□ -0.97
USP54-209ENST00000464635 LINC00482Q8N8I6 264 aa8.97□□□□□ -0.97
USP54-209ENST00000464635 CMTM2Q8TAZ6 248 aa8.97□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms