RNA–Protein interactions for RNA: ENST00000437600.8

CUX1-206, Transcript of cut like homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CUX1, Length 3,031 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-206ENST00000437600 EPDR1Q9UM22 224 aa7.48□□□□□ -1.21
CUX1-206ENST00000437600 F11RQ9Y624 299 aaKnown RBP7.48□□□□□ -1.21
CUX1-206ENST00000437600 M0QZ24 198 aa7.48□□□□□ -1.21
CUX1-206ENST00000437600 M0R3E3 92 aa7.48□□□□□ -1.21
CUX1-206ENST00000437600 IGKV1-17P01599 117 aa7.48□□□□□ -1.21
CUX1-206ENST00000437600 CX3CL1P78423 397 aa7.48□□□□□ -1.21
CUX1-206ENST00000437600 STXBP6Q8NFX7 210 aa7.48□□□□□ -1.21
CUX1-206ENST00000437600 OR2D3Q8NGH3 330 aa7.48□□□□□ -1.21
CUX1-206ENST00000437600 OR4A5Q8NH83 315 aa7.48□□□□□ -1.21
CUX1-206ENST00000437600 DPM3Q9P2X0 92 aa7.48□□□□□ -1.21
CUX1-206ENST00000437600 IGHV3OR16-13A0A075B7E8 117 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 IGHV3-74A0A0B4J1X5 117 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 MUC21A0A0G2JKD1 596 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 MUC21A0A140T8X8 626 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 HIGD1CA8MV81 97 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 NDUFB8O95169 186 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 IGHV4-39P01824 125 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 IGLC1P0CG04 106 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 FCGR2BP31994 310 aaPredicted RBP7.47□□□□□ -1.21
CUX1-206ENST00000437600 EFNA4P52798 201 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 FOXA3P55318 350 aaPredicted RBP7.47□□□□□ -1.21
CUX1-206ENST00000437600 KRTDAPP60985 99 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 MUC21Q5SSG8 566 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 TMEM136Q6ZRR5 245 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 TMEM116Q8NCL8 245 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 LY6G5BQ8NDX9 201 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 NUP35Q8NFH5 326 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 CCL19Q99731 98 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 RASL11BQ9BPW5 248 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 C19orf24Q9BVV8 132 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 Q9H3A6 140 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 ZNF586Q9NXT0 402 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 CRYGCP07315 174 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 RPL19P84098 196 aaKnown RBP7.47□□□□□ -1.21
CUX1-206ENST00000437600 NDPQ00604 133 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 PRNTQ86SH4 94 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 ATOH7Q8N100 152 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 THAP8Q8NA92 274 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 MRPL32Q9BYC8 188 aaKnown RBP7.47□□□□□ -1.21
CUX1-206ENST00000437600 CDC42EP3Q9UKI2 254 aa7.47□□□□□ -1.21
CUX1-206ENST00000437600 TIMM8BQ9Y5J9 83 aaPredicted RBP7.47□□□□□ -1.21
CUX1-206ENST00000437600 LY6LH3BQJ8 138 aa7.46□□□□□ -1.21
CUX1-206ENST00000437600 BMPR1BO00238 502 aa7.46□□□□□ -1.21
CUX1-206ENST00000437600 IL4P05112 153 aa7.46□□□□□ -1.21
CUX1-206ENST00000437600 FAM120AOSQ5T036 256 aa7.46□□□□□ -1.21
CUX1-206ENST00000437600 GOLT1AQ6ZVE7 132 aa7.46□□□□□ -1.21
CUX1-206ENST00000437600 SLC25A39Q9BZJ4 359 aaPredicted RBP7.46□□□□□ -1.21
CUX1-206ENST00000437600 OSTCQ9NRP0 149 aa7.46□□□□□ -1.21
CUX1-206ENST00000437600 MTORP42345 2549 aa7.46□□□□□ -1.21
CUX1-206ENST00000437600 I3L2K1 104 aa7.46□□□□□ -1.22
CUX1-206ENST00000437600 ATP5IP56385 69 aaPredicted RBP7.46□□□□□ -1.22
CUX1-206ENST00000437600 PMCHL1Q16048 86 aa7.46□□□□□ -1.22
CUX1-206ENST00000437600 C8orf31Q8N9H6 132 aa7.46□□□□□ -1.22
CUX1-206ENST00000437600 C8orf46Q8TAG6 207 aa7.46□□□□□ -1.22
CUX1-206ENST00000437600 PGLYRP4Q96LB8 373 aa7.46□□□□□ -1.22
CUX1-206ENST00000437600 TPPP3Q9BW30 176 aa7.46□□□□□ -1.22
CUX1-206ENST00000437600 LINC00527Q9UJ94 153 aa7.46□□□□□ -1.22
CUX1-206ENST00000437600 LINC01548A6NM66 108 aa7.46□□□□□ -1.22
CUX1-206ENST00000437600 K7EIM0 57 aa7.46□□□□□ -1.22
CUX1-206ENST00000437600 Q6ZN92 141 aa7.46□□□□□ -1.22
CUX1-206ENST00000437600 ZNF331Q9NQX6 463 aaPredicted RBP7.46□□□□□ -1.22
CUX1-206ENST00000437600 HIGD1AQ9Y241 93 aa7.46□□□□□ -1.22
CUX1-206ENST00000437600 SELENOKQ9Y6D0 94 aa7.46□□□□□ -1.22
CUX1-206ENST00000437600 INS-IGF2F8WCM5 200 aa7.45□□□□□ -1.22
CUX1-206ENST00000437600 NBR2O15453 112 aa7.45□□□□□ -1.22
CUX1-206ENST00000437600 OR2J3O76001 311 aa7.45□□□□□ -1.22
CUX1-206ENST00000437600 AMTP48728 403 aa7.45□□□□□ -1.22
CUX1-206ENST00000437600 PAFAH1B2P68402 229 aa7.45□□□□□ -1.22
CUX1-206ENST00000437600 SPATA45Q537H7 98 aa7.45□□□□□ -1.22
CUX1-206ENST00000437600 MAPK1IP1LQ8NDC0 245 aa7.45□□□□□ -1.22
CUX1-206ENST00000437600 OTOGQ6ZRI0 2925 aa7.45□□□□□ -1.22
CUX1-206ENST00000437600 BAHCC1Q9P281 2608 aa7.45□□□□□ -1.22
CUX1-206ENST00000437600 IGHV3-66A0A0C4DH42 116 aa7.45□□□□□ -1.22
CUX1-206ENST00000437600 OR2T8A6NH00 312 aa7.45□□□□□ -1.22
CUX1-206ENST00000437600 GP9P14770 177 aa7.45□□□□□ -1.22
CUX1-206ENST00000437600 PRTN3P24158 256 aa7.45□□□□□ -1.22
CUX1-206ENST00000437600 HNRNPA3P51991 378 aaKnown RBP7.45□□□□□ -1.22
CUX1-206ENST00000437600 ZNF138P52744 262 aa7.45□□□□□ -1.22
CUX1-206ENST00000437600 FAM71F2Q6NXP2 309 aa7.45□□□□□ -1.22
CUX1-206ENST00000437600 TRGV9Q99603 122 aa7.45□□□□□ -1.22
CUX1-206ENST00000437600 TMSB15BA0A087X1C1 80 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 IGHV3-49A0A0A0MS15 119 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 SMIM27A0A1W2PRY6 76 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 APCSP02743 223 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 AMY1AP04745 511 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 ATP5J2P56134 94 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 LCN12Q6JVE5 192 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 UNQ5815/PRO19632Q6UWF5 114 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 CFHR4Q92496 578 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 GNB1LQ9BYB4 327 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 FBXL7Q9UJT9 491 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 LAMTOR2Q9Y2Q5 125 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 TBL2Q9Y4P3 447 aaKnown RBP7.44□□□□□ -1.22
CUX1-206ENST00000437600 A0A1W2PS18 150 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 DIRC3C9JPN6 131 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 TCRAP04437 139 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 MYCNOSP40205 109 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 HINT1P49773 126 aaPredicted RBP7.44□□□□□ -1.22
CUX1-206ENST00000437600 LMO4P61968 165 aa7.44□□□□□ -1.22
CUX1-206ENST00000437600 GTSF1Q8WW33 167 aa7.44□□□□□ -1.22
Retrieved 100 of 20,778 RNA–protein pairs in 135 ms