RNA–Protein interactions for RNA: ENST00000411525.1

LINC00539-201, long intergenic non-protein coding RNA 539, humanhuman

TSL 3

Gene LINC00539, Length 664 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-201ENST00000411525 NBEAP1P0C6P0 100 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 C8orf86Q6ZUL3 223 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 DPF1Q92782 380 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 GRAMD2BQ96HH9 432 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 GPR82Q96P67 336 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 SEC11CQ9BY50 192 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 ZNF586Q9NXT0 402 aa8.59□□□□□ -1.03
LINC00539-201ENST00000411525 TRBV19A0A075B6N1 114 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 IGHV3OR16-13A0A075B7E8 117 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 A0A087X0K7 114 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 IGHV3-74A0A0B4J1X5 117 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 IGHV7-4-1A0A0J9YVY3 117 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 A0A1W2PS18 150 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 TMEM250H0YL14 139 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 H3BTX0 84 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 LGALS9O00182 355 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 SNRPCP09234 159 aaKnown RBP8.58□□□□□ -1.04
LINC00539-201ENST00000411525 ATF4P18848 351 aaPredicted RBP8.58□□□□□ -1.04
LINC00539-201ENST00000411525 GALR1P47211 349 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 CEBPGP53567 150 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 PDE6HQ13956 83 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 BEAN1Q3B7T3 259 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 TM4SF20Q53R12 229 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 KPRPQ5T749 579 aaPredicted RBP8.58□□□□□ -1.04
LINC00539-201ENST00000411525 HIST2H2BDQ6DRA6 164 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 C16orf54Q6UWD8 224 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 CCDC28AQ8IWP9 274 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 OR11H1Q8NG94 326 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 OR1N2Q8NGR9 330 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 GLMPQ8WWB7 406 aa8.58□□□□□ -1.04
LINC00539-201ENST00000411525 NKX6-2Q9C056 277 aaPredicted RBP8.58□□□□□ -1.04
LINC00539-201ENST00000411525 CARHSP1Q9Y2V2 147 aaKnown RBP8.58□□□□□ -1.04
LINC00539-201ENST00000411525 SCO2A0A1W2PP80 73 aa8.57□□□□□ -1.04
LINC00539-201ENST00000411525 A0A1W2PRX2 142 aa8.57□□□□□ -1.04
LINC00539-201ENST00000411525 TMEM213A2RRL7 107 aa8.57□□□□□ -1.04
LINC00539-201ENST00000411525 G3V4G9 280 aa8.57□□□□□ -1.04
LINC00539-201ENST00000411525 BMI1P35226 326 aa8.57□□□□□ -1.04
LINC00539-201ENST00000411525 SLURP1P55000 103 aa8.57□□□□□ -1.04
LINC00539-201ENST00000411525 SYNJ2BPP57105 145 aa8.57□□□□□ -1.04
LINC00539-201ENST00000411525 RANP62826 216 aaKnown RBP8.57□□□□□ -1.04
LINC00539-201ENST00000411525 SOHLH1Q5JUK2 328 aa8.57□□□□□ -1.04
LINC00539-201ENST00000411525 C10orf91Q5T1B1 145 aa8.57□□□□□ -1.04
LINC00539-201ENST00000411525 SAMD5Q5TGI4 173 aa8.57□□□□□ -1.04
LINC00539-201ENST00000411525 FAM90A2PQ658T7 463 aa8.57□□□□□ -1.04
LINC00539-201ENST00000411525 SIGLEC15Q6ZMC9 328 aa8.57□□□□□ -1.04
LINC00539-201ENST00000411525 C11orf52Q96A22 123 aa8.57□□□□□ -1.04
LINC00539-201ENST00000411525 ELOVL1Q9BW60 279 aa8.57□□□□□ -1.04
LINC00539-201ENST00000411525 Q9H3A6 140 aa8.57□□□□□ -1.04
LINC00539-201ENST00000411525 SLC17A3O00476 420 aa8.56□□□□□ -1.04
LINC00539-201ENST00000411525 ZNF253O75346 499 aa8.56□□□□□ -1.04
LINC00539-201ENST00000411525 NDUFB4O95168 129 aa8.56□□□□□ -1.04
LINC00539-201ENST00000411525 MYCNOSP40205 109 aa8.56□□□□□ -1.04
LINC00539-201ENST00000411525 SUMO1P63165 101 aaKnown RBP8.56□□□□□ -1.04
LINC00539-201ENST00000411525 FHL3Q13643 280 aa8.56□□□□□ -1.04
LINC00539-201ENST00000411525 KLF5Q13887 457 aaPredicted RBP8.56□□□□□ -1.04
LINC00539-201ENST00000411525 RPUSD4Q96CM3 377 aaKnown RBP8.56□□□□□ -1.04
LINC00539-201ENST00000411525 DUX3Q96PT4 197 aa8.56□□□□□ -1.04
LINC00539-201ENST00000411525 TCEAL7Q9BRU2 100 aa8.56□□□□□ -1.04
LINC00539-201ENST00000411525 OTORQ9NRC9 128 aa8.56□□□□□ -1.04
LINC00539-201ENST00000411525 SMPXQ9UHP9 88 aa8.56□□□□□ -1.04
LINC00539-201ENST00000411525 SMAD5-AS1Q9Y6J3 95 aa8.56□□□□□ -1.04
LINC00539-201ENST00000411525 ZNF785A8K8V0 405 aa8.55□□□□□ -1.04
LINC00539-201ENST00000411525 CCL24O00175 119 aa8.55□□□□□ -1.04
LINC00539-201ENST00000411525 CHEK1O14757 476 aa8.55□□□□□ -1.04
LINC00539-201ENST00000411525 APOC3P02656 99 aa8.55□□□□□ -1.04
LINC00539-201ENST00000411525 EDN2P20800 178 aa8.55□□□□□ -1.04
LINC00539-201ENST00000411525 MEOX2P50222 304 aa8.55□□□□□ -1.04
LINC00539-201ENST00000411525 PSG9Q00887 426 aa8.55□□□□□ -1.04
LINC00539-201ENST00000411525 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa8.55□□□□□ -1.04
LINC00539-201ENST00000411525 LYPD1Q8N2G4 141 aa8.55□□□□□ -1.04
LINC00539-201ENST00000411525 C5orf17Q8NAS9 161 aa8.55□□□□□ -1.04
LINC00539-201ENST00000411525 RAX2Q96IS3 184 aa8.55□□□□□ -1.04
LINC00539-201ENST00000411525 C17orf77Q96MU5 243 aa8.55□□□□□ -1.04
LINC00539-201ENST00000411525 RHPN1-AS1Q9BWJ2 59 aa8.55□□□□□ -1.04
LINC00539-201ENST00000411525 PARLQ9H300 379 aa8.55□□□□□ -1.04
LINC00539-201ENST00000411525 PGPA6NDG6 321 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 HELTA6NFD8 242 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 C2orf70A6NJV1 201 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 ADARB2-AS1A8MUL3 147 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 ZNF727A8MUV8 499 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 PEX7O00628 323 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 SLC25A5P05141 298 aaKnown RBP8.54□□□□□ -1.04
LINC00539-201ENST00000411525 GUCA2BQ16661 112 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 ZNF674Q2M3X9 581 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 FAM74A3Q4VXF1 159 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 NDUFA11Q86Y39 141 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 EXOC3-AS1Q8N2X6 119 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 SVBPQ8N300 66 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 SMIM7Q9BQ49 75 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 SLC50A1Q9BRV3 221 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 NIPSNAP3BQ9BS92 247 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 AAMDCQ9H7C9 122 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 PEMTQ9UBM1 199 aa8.54□□□□□ -1.04
LINC00539-201ENST00000411525 AKR1C3P42330 323 aa8.53□□□□□ -1.04
LINC00539-201ENST00000411525 GNG5P63218 68 aa8.53□□□□□ -1.04
LINC00539-201ENST00000411525 NSUN5P1Q3KNT7 163 aa8.53□□□□□ -1.04
LINC00539-201ENST00000411525 OR9G4Q8NGQ1 327 aa8.53□□□□□ -1.04
LINC00539-201ENST00000411525 CMTM2Q8TAZ6 248 aa8.53□□□□□ -1.04
LINC00539-201ENST00000411525 MRAPQ8TCY5 172 aa8.53□□□□□ -1.04
LINC00539-201ENST00000411525 C2CD4CQ8TF44 421 aa8.53□□□□□ -1.04
Retrieved 100 of 20,778 RNA–protein pairs in 60.8 ms