RNA–Protein interactions for RNA: ENST00000399494.5

HMGB1-205, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 1,282 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-205ENST00000399494 PFDN5Q99471 154 aa20.62■□□□□ 0.89
HMGB1-205ENST00000399494 NPCDR1Q9BY65 106 aa20.62■□□□□ 0.89
HMGB1-205ENST00000399494 SLC39A9Q9NUM3 307 aa20.62■□□□□ 0.89
HMGB1-205ENST00000399494 PXMP4Q9Y6I8 212 aa20.62■□□□□ 0.89
HMGB1-205ENST00000399494 SOCS3O14543 225 aa20.61■□□□□ 0.89
HMGB1-205ENST00000399494 CHAC2Q8WUX2 184 aa20.61■□□□□ 0.89
HMGB1-205ENST00000399494 ATP5SQ99766 215 aa20.61■□□□□ 0.89
HMGB1-205ENST00000399494 DNAJC4Q9NNZ3 241 aa20.61■□□□□ 0.89
HMGB1-205ENST00000399494 HLA-DMBP28068 263 aa20.6■□□□□ 0.89
HMGB1-205ENST00000399494 TMEM41BQ5BJD5 291 aa20.6■□□□□ 0.89
HMGB1-205ENST00000399494 MORN3Q6PF18 240 aaPredicted RBP20.6■□□□□ 0.89
HMGB1-205ENST00000399494 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa20.6■□□□□ 0.89
HMGB1-205ENST00000399494 ZNF709Q8N972 641 aa20.6■□□□□ 0.89
HMGB1-205ENST00000399494 TMEM37Q8WXS4 190 aa20.6■□□□□ 0.89
HMGB1-205ENST00000399494 ZNF705EA8MWA4 302 aaPredicted RBP20.59■□□□□ 0.89
HMGB1-205ENST00000399494 GIPP09681 153 aaPredicted RBP20.59■□□□□ 0.89
HMGB1-205ENST00000399494 MIFP14174 115 aa20.59■□□□□ 0.89
HMGB1-205ENST00000399494 ASB13Q8WXK3 278 aa20.59■□□□□ 0.89
HMGB1-205ENST00000399494 SMIM3Q9BZL3 60 aa20.59■□□□□ 0.89
HMGB1-205ENST00000399494 SPP1P10451 314 aa20.58■□□□□ 0.89
HMGB1-205ENST00000399494 WDR61Q9GZS3 305 aaKnown RBP20.58■□□□□ 0.89
HMGB1-205ENST00000399494 KCNIP2Q9NS61 270 aa20.58■□□□□ 0.89
HMGB1-205ENST00000399494 X6R8D5 127 aa20.58■□□□□ 0.89
HMGB1-205ENST00000399494 C4BPBP20851 252 aa20.57■□□□□ 0.88
HMGB1-205ENST00000399494 BPIFA4PQ86YQ2 179 aa20.57■□□□□ 0.88
HMGB1-205ENST00000399494 LRRC20Q8TCA0 184 aa20.57■□□□□ 0.88
HMGB1-205ENST00000399494 RPRMQ9NS64 109 aa20.57■□□□□ 0.88
HMGB1-205ENST00000399494 C17orf112F2Z3M2 114 aa20.56■□□□□ 0.88
HMGB1-205ENST00000399494 IFNA5P01569 189 aa20.56■□□□□ 0.88
HMGB1-205ENST00000399494 Q6ZTC4 211 aa20.56■□□□□ 0.88
HMGB1-205ENST00000399494 CSNK1G2-AS1Q8NCQ2 148 aa20.56■□□□□ 0.88
HMGB1-205ENST00000399494 KIAA1109Q2LD37 5005 aa20.55■□□□□ 0.88
HMGB1-205ENST00000399494 TRAV10A0A0B4J240 114 aa20.55■□□□□ 0.88
HMGB1-205ENST00000399494 FOXI2Q6ZQN5 318 aa20.55■□□□□ 0.88
HMGB1-205ENST00000399494 SCGB1C1Q8TD33 95 aa20.55■□□□□ 0.88
HMGB1-205ENST00000399494 C17orf77Q96MU5 243 aa20.55■□□□□ 0.88
HMGB1-205ENST00000399494 IGHV4-4A0A075B6R2 117 aa20.54■□□□□ 0.88
HMGB1-205ENST00000399494 A0A087X0K7 114 aa20.54■□□□□ 0.88
HMGB1-205ENST00000399494 HLA-DRB4P13762 266 aa20.54■□□□□ 0.88
HMGB1-205ENST00000399494 MORN5Q5VZ52 161 aa20.54■□□□□ 0.88
HMGB1-205ENST00000399494 EBLN2Q6P2I7 272 aa20.54■□□□□ 0.88
HMGB1-205ENST00000399494 SAV1Q9H4B6 383 aaPredicted RBP20.54■□□□□ 0.88
HMGB1-205ENST00000399494 HLA-DRB4X5D2U9 266 aa20.54■□□□□ 0.88
HMGB1-205ENST00000399494 H3BMM0 161 aa20.53■□□□□ 0.88
HMGB1-205ENST00000399494 DEFB1P60022 68 aa20.53■□□□□ 0.88
HMGB1-205ENST00000399494 NUTF2P61970 127 aaKnown RBP20.53■□□□□ 0.88
HMGB1-205ENST00000399494 CLEC5AQ9NY25 188 aa20.53■□□□□ 0.88
HMGB1-205ENST00000399494 PCLOQ9Y6V0 5065 aa20.52■□□□□ 0.88
HMGB1-205ENST00000399494 GDF5OSQ5U4N7 250 aa20.52■□□□□ 0.88
HMGB1-205ENST00000399494 IGFL4Q6B9Z1 124 aa20.52■□□□□ 0.88
HMGB1-205ENST00000399494 C20orf173Q96LM9 149 aa20.52■□□□□ 0.88
HMGB1-205ENST00000399494 MRPS12O15235 138 aaKnown RBP20.51■□□□□ 0.87
HMGB1-205ENST00000399494 IGKV3-20P01619 116 aa20.51■□□□□ 0.87
HMGB1-205ENST00000399494 SPATA31B1PQ5VZV4 182 aa20.51■□□□□ 0.87
HMGB1-205ENST00000399494 LCN15Q6UWW0 184 aa20.51■□□□□ 0.87
HMGB1-205ENST00000399494 RNF182Q8N6D2 247 aa20.51■□□□□ 0.87
HMGB1-205ENST00000399494 OR4B1Q8NGF8 309 aa20.51■□□□□ 0.87
HMGB1-205ENST00000399494 TRAV5A0A0B4J249 113 aa20.5■□□□□ 0.87
HMGB1-205ENST00000399494 OR2T35Q8NGX2 323 aa20.5■□□□□ 0.87
HMGB1-205ENST00000399494 TRAV8-2A0A0B4J237 113 aa20.49■□□□□ 0.87
HMGB1-205ENST00000399494 F6UB75 175 aa20.49■□□□□ 0.87
HMGB1-205ENST00000399494 SNRPCP09234 159 aaKnown RBP20.49■□□□□ 0.87
HMGB1-205ENST00000399494 CXCL2P19875 107 aa20.49■□□□□ 0.87
HMGB1-205ENST00000399494 Q5BKY6 102 aa20.49■□□□□ 0.87
HMGB1-205ENST00000399494 GCSAMLQ5JQS6 135 aa20.49■□□□□ 0.87
HMGB1-205ENST00000399494 FAM78BQ5VT40 261 aa20.49■□□□□ 0.87
HMGB1-205ENST00000399494 LINC00336Q6ZUF6 198 aa20.49■□□□□ 0.87
HMGB1-205ENST00000399494 ZNF738Q8NE65 137 aa20.49■□□□□ 0.87
HMGB1-205ENST00000399494 CELA1Q9UNI1 258 aa20.49■□□□□ 0.87
HMGB1-205ENST00000399494 FXYD6-FXYD2A0A087WZ82 144 aa20.48■□□□□ 0.87
HMGB1-205ENST00000399494 C12orf74Q32Q52 190 aa20.48■□□□□ 0.87
HMGB1-205ENST00000399494 INO80EQ8NBZ0 244 aaPredicted RBP20.48■□□□□ 0.87
HMGB1-205ENST00000399494 AQP10Q96PS8 301 aa20.48■□□□□ 0.87
HMGB1-205ENST00000399494 SLC50A1Q9BRV3 221 aa20.48■□□□□ 0.87
HMGB1-205ENST00000399494 C1QTNF4Q9BXJ3 329 aa20.48■□□□□ 0.87
HMGB1-205ENST00000399494 A0A0J9YX75 114 aa20.47■□□□□ 0.87
HMGB1-205ENST00000399494 PARD6GQ9BYG4 376 aaPredicted RBP20.47■□□□□ 0.87
HMGB1-205ENST00000399494 WFDC1Q9HC57 220 aa20.47■□□□□ 0.87
HMGB1-205ENST00000399494 FAT2Q9NYQ8 4349 aa20.46■□□□□ 0.87
HMGB1-205ENST00000399494 DNAH17Q9UFH2 4485 aa20.46■□□□□ 0.87
HMGB1-205ENST00000399494 H3BTX0 84 aa20.46■□□□□ 0.87
HMGB1-205ENST00000399494 IGLC2P0DOY2 106 aa20.46■□□□□ 0.87
HMGB1-205ENST00000399494 FFAR4Q5NUL3 377 aa20.46■□□□□ 0.87
HMGB1-205ENST00000399494 A0A1B0GVY2 172 aa20.45■□□□□ 0.86
HMGB1-205ENST00000399494 ZNF331Q9NQX6 463 aaPredicted RBP20.45■□□□□ 0.86
HMGB1-205ENST00000399494 DEFB131BA0A096LNP1 70 aa20.44■□□□□ 0.86
HMGB1-205ENST00000399494 ZNF266Q14584 549 aa20.44■□□□□ 0.86
HMGB1-205ENST00000399494 PSG3Q16557 428 aa20.44■□□□□ 0.86
HMGB1-205ENST00000399494 GUK1Q16774 197 aa20.44■□□□□ 0.86
HMGB1-205ENST00000399494 ZNF767PQ75MW2 155 aa20.44■□□□□ 0.86
HMGB1-205ENST00000399494 MRPL32Q9BYC8 188 aaKnown RBP20.44■□□□□ 0.86
HMGB1-205ENST00000399494 XCL2Q9UBD3 114 aa20.44■□□□□ 0.86
HMGB1-205ENST00000399494 DNAH2Q9P225 4427 aa20.44■□□□□ 0.86
HMGB1-205ENST00000399494 H3BQ15 152 aa20.43■□□□□ 0.86
HMGB1-205ENST00000399494 DUSP14O95147 198 aaKnown RBP20.43■□□□□ 0.86
HMGB1-205ENST00000399494 AMBPP02760 352 aa20.43■□□□□ 0.86
HMGB1-205ENST00000399494 FXYD7P58549 80 aa20.43■□□□□ 0.86
HMGB1-205ENST00000399494 CLUHP3Q96NS8 147 aa20.43■□□□□ 0.86
HMGB1-205ENST00000399494 TMEM14CQ9P0S9 112 aa20.43■□□□□ 0.86
HMGB1-205ENST00000399494 SLC17A3O00476 420 aa20.42■□□□□ 0.86
Retrieved 100 of 20,778 RNA–protein pairs in 75.1 ms