RNA–Protein interactions for RNA: ENST00000375820.8

COL4A1-201, Transcript of collagen type IV alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A1, Length 6,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A1-201ENST00000375820 CD5P06127 495 aa11.13□□□□□ -0.63
COL4A1-201ENST00000375820 INTS1Q8N201 2190 aaKnown RBP11.13□□□□□ -0.63
COL4A1-201ENST00000375820 NTN3O00634 580 aaPredicted RBP11.12□□□□□ -0.63
COL4A1-201ENST00000375820 PI4KAP42356 2102 aa11.12□□□□□ -0.63
COL4A1-201ENST00000375820 CFHR2P36980 270 aa11.12□□□□□ -0.63
COL4A1-201ENST00000375820 ARMS2P0C7Q2 107 aa11.12□□□□□ -0.63
COL4A1-201ENST00000375820 MPZP25189 248 aa11.12□□□□□ -0.63
COL4A1-201ENST00000375820 TCF15Q12870 199 aa11.12□□□□□ -0.63
COL4A1-201ENST00000375820 MBD3L4A6NDZ8 208 aaPredicted RBP11.12□□□□□ -0.63
COL4A1-201ENST00000375820 MBD3L3A6NE82 208 aaPredicted RBP11.12□□□□□ -0.63
COL4A1-201ENST00000375820 MBD3L5A6NJ08 208 aaPredicted RBP11.12□□□□□ -0.63
COL4A1-201ENST00000375820 SYS1-DBNDD2H3BUS1 97 aa11.12□□□□□ -0.63
COL4A1-201ENST00000375820 CSRP1P21291 193 aaKnown RBP11.12□□□□□ -0.63
COL4A1-201ENST00000375820 C9orf139Q6ZV77 190 aa11.12□□□□□ -0.63
COL4A1-201ENST00000375820 RPRMLQ8N4K4 120 aa11.12□□□□□ -0.63
COL4A1-201ENST00000375820 MBD3L2Q8NHZ7 208 aaPredicted RBP11.12□□□□□ -0.63
COL4A1-201ENST00000375820 DSCR9P59020 149 aa11.12□□□□□ -0.63
COL4A1-201ENST00000375820 PMVKQ15126 192 aa11.12□□□□□ -0.63
COL4A1-201ENST00000375820 ANXA2RQ3ZCQ2 193 aa11.12□□□□□ -0.63
COL4A1-201ENST00000375820 DLX4Q92988 240 aaPredicted RBP11.12□□□□□ -0.63
COL4A1-201ENST00000375820 PNRC2Q9NPJ4 139 aaKnown RBP11.12□□□□□ -0.63
COL4A1-201ENST00000375820 COX11Q9Y6N1 276 aa11.12□□□□□ -0.63
COL4A1-201ENST00000375820 SCN4AP35499 1836 aa11.12□□□□□ -0.63
COL4A1-201ENST00000375820 PAX9P55771 341 aa11.11□□□□□ -0.63
COL4A1-201ENST00000375820 HS3ST6Q96QI5 342 aa11.11□□□□□ -0.63
COL4A1-201ENST00000375820 LIME1Q9H400 295 aa11.11□□□□□ -0.63
COL4A1-201ENST00000375820 SMPXQ9UHP9 88 aa11.11□□□□□ -0.63
COL4A1-201ENST00000375820 THSD7AQ9UPZ6 1657 aa11.11□□□□□ -0.63
COL4A1-201ENST00000375820 MED12Q93074 2177 aa11.11□□□□□ -0.63
COL4A1-201ENST00000375820 ZDBF2Q9HCK1 2354 aa11.11□□□□□ -0.63
COL4A1-201ENST00000375820 CGB7P0DN87 165 aa11.11□□□□□ -0.63
COL4A1-201ENST00000375820 CHAC1Q9BUX1 264 aa11.11□□□□□ -0.63
COL4A1-201ENST00000375820 LRRC37AA6NMS7 1700 aa11.11□□□□□ -0.63
COL4A1-201ENST00000375820 MYMXA0A1B0GTQ4 84 aa11.11□□□□□ -0.63
COL4A1-201ENST00000375820 RNASE13Q5GAN3 156 aaKnown RBP11.11□□□□□ -0.63
COL4A1-201ENST00000375820 Q6P435 159 aa11.11□□□□□ -0.63
COL4A1-201ENST00000375820 RASL11AQ6T310 242 aa11.11□□□□□ -0.63
COL4A1-201ENST00000375820 SNHG12Q9BXW3 62 aa11.11□□□□□ -0.63
COL4A1-201ENST00000375820 TP53TG1Q9Y2A0 90 aa11.11□□□□□ -0.63
COL4A1-201ENST00000375820 GAGE12BA1L429 117 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 G3V318 75 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 ZNF561-AS1K7EIQ3 104 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 GAGE7O76087 117 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 GAGE12FP0CL80 117 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 GAGE12GP0CL81 117 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 GAGE12IP0CL82 117 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 ATP6V0E1O15342 81 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 MINOS1Q5TGZ0 78 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 UNQ6494/PRO21346Q6UXR6 183 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 ADAMTSL5Q6ZMM2 481 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 KLF12Q9Y4X4 402 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 MINOS1-NBL1R4GNA1 71 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 C15orf62A8K5M9 175 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 GAGE6Q13070 117 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 NMSQ5H8A3 153 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 LINC01356Q8N9X3 169 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 MRAPQ8TCY5 172 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 SBF2Q86WG5 1849 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 TRAV12-1A0A0B4J245 112 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 TMEM126AQ9H061 195 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 NDUFS6O75380 124 aaKnown RBP11.1□□□□□ -0.63
COL4A1-201ENST00000375820 CLPSP04118 112 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 TMEM242Q9NWH2 141 aa11.1□□□□□ -0.63
COL4A1-201ENST00000375820 E7EQL1 145 aa11.09□□□□□ -0.63
COL4A1-201ENST00000375820 FBLN5Q9UBX5 448 aa11.09□□□□□ -0.63
COL4A1-201ENST00000375820 LRRK1Q38SD2 2015 aa11.09□□□□□ -0.63
COL4A1-201ENST00000375820 DOCK6Q96HP0 2047 aa11.09□□□□□ -0.63
COL4A1-201ENST00000375820 DOCK10Q96BY6 2186 aa11.09□□□□□ -0.63
COL4A1-201ENST00000375820 NDUFS8O00217 210 aa11.09□□□□□ -0.63
COL4A1-201ENST00000375820 DUX4L9Q6RFH8 374 aaPredicted RBP11.09□□□□□ -0.63
COL4A1-201ENST00000375820 Q96MF0 132 aa11.09□□□□□ -0.63
COL4A1-201ENST00000375820 DAD1P61803 113 aa11.09□□□□□ -0.63
COL4A1-201ENST00000375820 MORN5Q5VZ52 161 aa11.09□□□□□ -0.63
COL4A1-201ENST00000375820 Q86TA4 180 aa11.09□□□□□ -0.63
COL4A1-201ENST00000375820 LHFPL1Q86WI0 220 aa11.09□□□□□ -0.63
COL4A1-201ENST00000375820 DOPEY2Q9Y3R5 2298 aa11.09□□□□□ -0.63
COL4A1-201ENST00000375820 KIAA2026Q5HYC2 2103 aa11.08□□□□□ -0.64
COL4A1-201ENST00000375820 FAM223BA6NKX1 122 aa11.08□□□□□ -0.64
COL4A1-201ENST00000375820 GAS1P54826 345 aa11.08□□□□□ -0.64
COL4A1-201ENST00000375820 SP5Q6BEB4 398 aaPredicted RBP11.08□□□□□ -0.64
COL4A1-201ENST00000375820 FAM223AQ8IWN6 122 aa11.08□□□□□ -0.64
COL4A1-201ENST00000375820 TRIOBPQ9H2D6 2365 aa11.08□□□□□ -0.64
COL4A1-201ENST00000375820 SPINK8P0C7L1 97 aa11.08□□□□□ -0.64
COL4A1-201ENST00000375820 RNASE2P10153 161 aaKnown RBP11.08□□□□□ -0.64
COL4A1-201ENST00000375820 ZNF124Q15973 351 aa11.08□□□□□ -0.64
COL4A1-201ENST00000375820 Q6ZRM9 215 aa11.08□□□□□ -0.64
COL4A1-201ENST00000375820 DAZ1Q9NQZ3 744 aaKnown RBP11.08□□□□□ -0.64
COL4A1-201ENST00000375820 SCN10AQ9Y5Y9 1956 aa11.08□□□□□ -0.64
COL4A1-201ENST00000375820 TRBV24-1A0A075B6N3 115 aa11.08□□□□□ -0.64
COL4A1-201ENST00000375820 RS1O15537 224 aa11.08□□□□□ -0.64
COL4A1-201ENST00000375820 TMEM14EPQ6UXP3 125 aa11.08□□□□□ -0.64
COL4A1-201ENST00000375820 CEACAM8P31997 349 aaPredicted RBP11.08□□□□□ -0.64
COL4A1-201ENST00000375820 LY6G5BQ8NDX9 201 aa11.08□□□□□ -0.64
COL4A1-201ENST00000375820 SCN5AQ14524 2016 aa11.07□□□□□ -0.64
COL4A1-201ENST00000375820 ANKHD1-EIF4EBP3H7C0V5 636 aaPredicted RBP11.07□□□□□ -0.64
COL4A1-201ENST00000375820 AZU1P20160 251 aa11.07□□□□□ -0.64
COL4A1-201ENST00000375820 CMC4P56277 68 aaPredicted RBP11.07□□□□□ -0.64
COL4A1-201ENST00000375820 DTX1Q86Y01 620 aa11.07□□□□□ -0.64
COL4A1-201ENST00000375820 RNF166Q96A37 237 aaPredicted RBP11.07□□□□□ -0.64
COL4A1-201ENST00000375820 TAF1LQ8IZX4 1826 aa11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 55.6 ms