RNA–Protein interactions for RNA: ENST00000359082.3

SHANK1-202, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 5 BASIC

Gene SHANK1, Length 6,459 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-202ENST00000359082 GAGE12JA6NER3 117 aa14.9□□□□□ -0.02
SHANK1-202ENST00000359082 C15orf62A8K5M9 175 aa14.9□□□□□ -0.02
SHANK1-202ENST00000359082 GAGE1Q13065 139 aa14.9□□□□□ -0.02
SHANK1-202ENST00000359082 GAGE4Q13068 117 aa14.9□□□□□ -0.02
SHANK1-202ENST00000359082 GAGE5Q13069 117 aa14.9□□□□□ -0.02
SHANK1-202ENST00000359082 MAJINQ3KP22 176 aa14.9□□□□□ -0.02
SHANK1-202ENST00000359082 SUMO4Q6EEV6 95 aa14.9□□□□□ -0.02
SHANK1-202ENST00000359082 LY6G5BQ8NDX9 201 aa14.9□□□□□ -0.02
SHANK1-202ENST00000359082 C9JAW5 83 aa14.9□□□□□ -0.02
SHANK1-202ENST00000359082 TMEM190Q8WZ59 177 aa14.9□□□□□ -0.02
SHANK1-202ENST00000359082 LIME1Q9H400 295 aa14.9□□□□□ -0.02
SHANK1-202ENST00000359082 TRPT1Q86TN4 253 aaKnown RBP14.9□□□□□ -0.02
SHANK1-202ENST00000359082 C3orf56Q8N813 242 aa14.9□□□□□ -0.02
SHANK1-202ENST00000359082 MAPK1IP1LQ8NDC0 245 aa14.9□□□□□ -0.02
SHANK1-202ENST00000359082 DAZ1Q9NQZ3 744 aaKnown RBP14.9□□□□□ -0.02
SHANK1-202ENST00000359082 RNASE2P10153 161 aaKnown RBP14.89□□□□□ -0.03
SHANK1-202ENST00000359082 CEACAM8P31997 349 aaPredicted RBP14.89□□□□□ -0.03
SHANK1-202ENST00000359082 ZC2HC1BQ5TFG8 222 aa14.89□□□□□ -0.03
SHANK1-202ENST00000359082 LYPD1Q8N2G4 141 aa14.89□□□□□ -0.03
SHANK1-202ENST00000359082 LINC00479Q96M42 142 aa14.89□□□□□ -0.03
SHANK1-202ENST00000359082 RNF223E7ERA6 249 aa14.89□□□□□ -0.03
SHANK1-202ENST00000359082 XCL2Q9UBD3 114 aa14.89□□□□□ -0.03
SHANK1-202ENST00000359082 MDS2Q8NDY4 140 aa14.88□□□□□ -0.03
SHANK1-202ENST00000359082 RNF114Q9Y508 228 aa14.88□□□□□ -0.03
SHANK1-202ENST00000359082 A0A0G2JRQ6 117 aa14.88□□□□□ -0.03
SHANK1-202ENST00000359082 PMVKQ15126 192 aa14.88□□□□□ -0.03
SHANK1-202ENST00000359082 MRPL52Q86TS9 123 aaKnown RBP14.88□□□□□ -0.03
SHANK1-202ENST00000359082 F5H768 121 aa14.88□□□□□ -0.03
SHANK1-202ENST00000359082 ARMS2P0C7Q2 107 aa14.88□□□□□ -0.03
SHANK1-202ENST00000359082 SNHG12Q9BXW3 62 aa14.88□□□□□ -0.03
SHANK1-202ENST00000359082 ICE1Q9Y2F5 2266 aa14.88□□□□□ -0.03
SHANK1-202ENST00000359082 IGKV1-16P04430 117 aa14.88□□□□□ -0.03
SHANK1-202ENST00000359082 LY96Q9Y6Y9 160 aa14.88□□□□□ -0.03
SHANK1-202ENST00000359082 ZNF561-AS1K7EIQ3 104 aa14.87□□□□□ -0.03
SHANK1-202ENST00000359082 TMEM213A2RRL7 107 aa14.87□□□□□ -0.03
SHANK1-202ENST00000359082 STPG4Q8N801 248 aa14.87□□□□□ -0.03
SHANK1-202ENST00000359082 TP53TG1Q9Y2A0 90 aa14.87□□□□□ -0.03
SHANK1-202ENST00000359082 SNRNP200O75643 2136 aaKnown RBP14.87□□□□□ -0.03
SHANK1-202ENST00000359082 RBMY1FQ15415 496 aaKnown RBP14.87□□□□□ -0.03
SHANK1-202ENST00000359082 ADAMTSL5Q6ZMM2 481 aa14.87□□□□□ -0.03
SHANK1-202ENST00000359082 CRIPAKQ8N1N5 446 aa14.87□□□□□ -0.03
SHANK1-202ENST00000359082 SHANK2-AS3Q9BTD1 123 aa14.87□□□□□ -0.03
SHANK1-202ENST00000359082 UNQ6494/PRO21346Q6UXR6 183 aa14.87□□□□□ -0.03
SHANK1-202ENST00000359082 SEC16AO15027 2179 aa14.86□□□□□ -0.03
SHANK1-202ENST00000359082 TCF15Q12870 199 aa14.86□□□□□ -0.03
SHANK1-202ENST00000359082 SPINK13Q1W4C9 94 aa14.86□□□□□ -0.03
SHANK1-202ENST00000359082 MRPL27Q9P0M9 148 aaKnown RBP14.86□□□□□ -0.03
SHANK1-202ENST00000359082 LINC01619G3V211 115 aa14.86□□□□□ -0.03
SHANK1-202ENST00000359082 ATP6V0E1O15342 81 aa14.86□□□□□ -0.03
SHANK1-202ENST00000359082 SLC25A16P16260 332 aa14.86□□□□□ -0.03
SHANK1-202ENST00000359082 E7EQL1 145 aa14.86□□□□□ -0.03
SHANK1-202ENST00000359082 ZNF664Q8N3J9 261 aa14.86□□□□□ -0.03
SHANK1-202ENST00000359082 DAD1P61803 113 aa14.85□□□□□ -0.03
SHANK1-202ENST00000359082 PFN2P35080 140 aa14.85□□□□□ -0.03
SHANK1-202ENST00000359082 TMEM75Q8N9X5 138 aa14.85□□□□□ -0.03
SHANK1-202ENST00000359082 GAGE12BA1L429 117 aa14.85□□□□□ -0.03
SHANK1-202ENST00000359082 TRBV6-6A0A0A6YYG2 114 aa14.85□□□□□ -0.03
SHANK1-202ENST00000359082 MBD3L4A6NDZ8 208 aaPredicted RBP14.85□□□□□ -0.03
SHANK1-202ENST00000359082 MBD3L3A6NE82 208 aaPredicted RBP14.85□□□□□ -0.03
SHANK1-202ENST00000359082 MBD3L5A6NJ08 208 aaPredicted RBP14.85□□□□□ -0.03
SHANK1-202ENST00000359082 HOXD3P31249 432 aaPredicted RBP14.85□□□□□ -0.03
SHANK1-202ENST00000359082 MBD3L2Q8NHZ7 208 aaPredicted RBP14.85□□□□□ -0.03
SHANK1-202ENST00000359082 CFHR2P36980 270 aa14.84□□□□□ -0.03
SHANK1-202ENST00000359082 B3GALT5-AS1P59052 145 aa14.84□□□□□ -0.03
SHANK1-202ENST00000359082 SPINK8P0C7L1 97 aa14.84□□□□□ -0.03
SHANK1-202ENST00000359082 AZU1P20160 251 aa14.84□□□□□ -0.03
SHANK1-202ENST00000359082 QRFPP83859 136 aa14.84□□□□□ -0.03
SHANK1-202ENST00000359082 GFRA4Q9GZZ7 299 aa14.84□□□□□ -0.03
SHANK1-202ENST00000359082 TMEM126AQ9H061 195 aa14.84□□□□□ -0.03
SHANK1-202ENST00000359082 LCTP09848 1927 aa14.84□□□□□ -0.03
SHANK1-202ENST00000359082 GATA4P43694 442 aa14.84□□□□□ -0.03
SHANK1-202ENST00000359082 GREB1Q4ZG55 1949 aa14.83□□□□□ -0.03
SHANK1-202ENST00000359082 IGHV3-38A0A0C4DH36 116 aa14.83□□□□□ -0.03
SHANK1-202ENST00000359082 NKAPP1Q8N9T2 125 aa14.83□□□□□ -0.03
SHANK1-202ENST00000359082 TRAV26-2A0A0B4J265 109 aa14.83□□□□□ -0.04
SHANK1-202ENST00000359082 SP5Q6BEB4 398 aaPredicted RBP14.83□□□□□ -0.04
SHANK1-202ENST00000359082 TRBV25-1A0A075B6N4 114 aa14.83□□□□□ -0.04
SHANK1-202ENST00000359082 A0A1W2PPI3 338 aa14.83□□□□□ -0.04
SHANK1-202ENST00000359082 RALGAPA1Q6GYQ0 2036 aa14.82□□□□□ -0.04
SHANK1-202ENST00000359082 CGB3P0DN86 165 aa14.82□□□□□ -0.04
SHANK1-202ENST00000359082 I3L3M4 83 aa14.81□□□□□ -0.04
SHANK1-202ENST00000359082 CD5LO43866 347 aa14.81□□□□□ -0.04
SHANK1-202ENST00000359082 PAX9P55771 341 aa14.81□□□□□ -0.04
SHANK1-202ENST00000359082 HS3ST6Q96QI5 342 aa14.81□□□□□ -0.04
SHANK1-202ENST00000359082 H3BMM0 161 aa14.81□□□□□ -0.04
SHANK1-202ENST00000359082 PRR30Q53SZ7 412 aaPredicted RBP14.81□□□□□ -0.04
SHANK1-202ENST00000359082 THAP8Q8NA92 274 aa14.81□□□□□ -0.04
SHANK1-202ENST00000359082 UBE2WQ96B02 151 aa14.81□□□□□ -0.04
SHANK1-202ENST00000359082 LTBP1Q14766 1721 aa14.81□□□□□ -0.04
SHANK1-202ENST00000359082 TRAV12-2A0A075B6T6 113 aa14.81□□□□□ -0.04
SHANK1-202ENST00000359082 Q96MF0 132 aa14.81□□□□□ -0.04
SHANK1-202ENST00000359082 GAGE7O76087 117 aa14.8□□□□□ -0.04
SHANK1-202ENST00000359082 GAGE12FP0CL80 117 aa14.8□□□□□ -0.04
SHANK1-202ENST00000359082 GAGE12GP0CL81 117 aa14.8□□□□□ -0.04
SHANK1-202ENST00000359082 GAGE12IP0CL82 117 aa14.8□□□□□ -0.04
SHANK1-202ENST00000359082 Q6ZRM9 215 aa14.8□□□□□ -0.04
SHANK1-202ENST00000359082 TRAV25A0A0B4J276 109 aa14.8□□□□□ -0.04
SHANK1-202ENST00000359082 MSMBP08118 114 aa14.8□□□□□ -0.04
SHANK1-202ENST00000359082 GAGE6Q13070 117 aa14.8□□□□□ -0.04
SHANK1-202ENST00000359082 SOCS3O14543 225 aa14.8□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms