RNA–Protein interactions for RNA: ENST00000309546.7

LIME1-201, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIME1, Length 1,178 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-201ENST00000309546 TRAV12-2A0A075B6T6 113 aa13.9□□□□□ -0.18
LIME1-201ENST00000309546 BOLA2-SMG1P6H3BVE0 249 aa13.9□□□□□ -0.18
LIME1-201ENST00000309546 SNRPCP09234 159 aaKnown RBP13.9□□□□□ -0.18
LIME1-201ENST00000309546 CAV2P51636 162 aa13.9□□□□□ -0.18
LIME1-201ENST00000309546 RHOBP62745 196 aa13.9□□□□□ -0.18
LIME1-201ENST00000309546 PXDC1Q5TGL8 231 aa13.9□□□□□ -0.18
LIME1-201ENST00000309546 LINC00305Q7Z4B0 112 aa13.9□□□□□ -0.18
LIME1-201ENST00000309546 MGST2Q99735 147 aa13.9□□□□□ -0.18
LIME1-201ENST00000309546 GGACTQ9BVM4 153 aa13.9□□□□□ -0.18
LIME1-201ENST00000309546 RNF24Q9Y225 148 aa13.9□□□□□ -0.18
LIME1-201ENST00000309546 ZNF705GA8MUZ8 300 aaPredicted RBP13.89□□□□□ -0.19
LIME1-201ENST00000309546 CRXO43186 299 aaPredicted RBP13.89□□□□□ -0.19
LIME1-201ENST00000309546 COX7A2P2O60397 106 aa13.89□□□□□ -0.19
LIME1-201ENST00000309546 PRM2P04554 102 aa13.89□□□□□ -0.19
LIME1-201ENST00000309546 DAD1P61803 113 aa13.89□□□□□ -0.19
LIME1-201ENST00000309546 PSG3Q16557 428 aa13.89□□□□□ -0.19
LIME1-201ENST00000309546 POM121L12Q8N7R1 296 aa13.89□□□□□ -0.19
LIME1-201ENST00000309546 OR8A1Q8NGG7 326 aa13.89□□□□□ -0.19
LIME1-201ENST00000309546 CST7O76096 145 aa13.88□□□□□ -0.19
LIME1-201ENST00000309546 S100A10P60903 97 aa13.88□□□□□ -0.19
LIME1-201ENST00000309546 UBE2DNLQ8IWF7 75 aa13.88□□□□□ -0.19
LIME1-201ENST00000309546 C12orf45Q8N5I9 185 aaPredicted RBP13.88□□□□□ -0.19
LIME1-201ENST00000309546 CCDC32Q9BV29 185 aa13.88□□□□□ -0.19
LIME1-201ENST00000309546 FAM24AA6NFZ4 105 aa13.87□□□□□ -0.19
LIME1-201ENST00000309546 MRPS12O15235 138 aaKnown RBP13.87□□□□□ -0.19
LIME1-201ENST00000309546 H2AFB2P0C5Z0 115 aa13.87□□□□□ -0.19
LIME1-201ENST00000309546 OXA1LQ15070 435 aa13.87□□□□□ -0.19
LIME1-201ENST00000309546 LCN15Q6UWW0 184 aa13.87□□□□□ -0.19
LIME1-201ENST00000309546 RPUSD4Q96CM3 377 aaKnown RBP13.87□□□□□ -0.19
LIME1-201ENST00000309546 C2orf50Q96LR7 162 aa13.87□□□□□ -0.19
LIME1-201ENST00000309546 H3BTX0 84 aa13.86□□□□□ -0.19
LIME1-201ENST00000309546 PVALBP20472 110 aaPredicted RBP13.86□□□□□ -0.19
LIME1-201ENST00000309546 CAMLGP49069 296 aa13.86□□□□□ -0.19
LIME1-201ENST00000309546 C10orf113Q5VZT2 155 aa13.86□□□□□ -0.19
LIME1-201ENST00000309546 BPIFA4PQ86YQ2 179 aa13.86□□□□□ -0.19
LIME1-201ENST00000309546 SLC50A1Q9BRV3 221 aa13.86□□□□□ -0.19
LIME1-201ENST00000309546 HECTD4Q9Y4D8 3996 aa13.85□□□□□ -0.19
LIME1-201ENST00000309546 FAM240BA0A1B0GVZ2 78 aa13.85□□□□□ -0.19
LIME1-201ENST00000309546 M0R2N4 97 aa13.85□□□□□ -0.19
LIME1-201ENST00000309546 CXCL2P19875 107 aa13.85□□□□□ -0.19
LIME1-201ENST00000309546 B2MP61769 119 aa13.85□□□□□ -0.19
LIME1-201ENST00000309546 RAB31Q13636 194 aa13.85□□□□□ -0.19
LIME1-201ENST00000309546 OPCMLQ14982 345 aa13.85□□□□□ -0.19
LIME1-201ENST00000309546 MORN5Q5VZ52 161 aa13.85□□□□□ -0.19
LIME1-201ENST00000309546 NRARPQ7Z6K4 114 aa13.85□□□□□ -0.19
LIME1-201ENST00000309546 TMEM37Q8WXS4 190 aa13.85□□□□□ -0.19
LIME1-201ENST00000309546 FAM210BQ96KR6 192 aa13.85□□□□□ -0.19
LIME1-201ENST00000309546 LINC01587Q99440 93 aa13.85□□□□□ -0.19
LIME1-201ENST00000309546 ZNF331Q9NQX6 463 aaPredicted RBP13.85□□□□□ -0.19
LIME1-201ENST00000309546 UQCC1Q9NVA1 299 aa13.85□□□□□ -0.19
LIME1-201ENST00000309546 UBE2L5PA0A1B0GUS4 154 aa13.84□□□□□ -0.19
LIME1-201ENST00000309546 MIC13Q5XKP0 118 aa13.84□□□□□ -0.19
LIME1-201ENST00000309546 TMEM88Q6PEY1 159 aa13.84□□□□□ -0.19
LIME1-201ENST00000309546 Q6ZRG5 221 aa13.84□□□□□ -0.19
LIME1-201ENST00000309546 C11orf1Q9H5F2 150 aa13.84□□□□□ -0.19
LIME1-201ENST00000309546 SLC17A3O00476 420 aa13.83□□□□□ -0.2
LIME1-201ENST00000309546 DEFB130BP0DP73 79 aa13.83□□□□□ -0.2
LIME1-201ENST00000309546 DEFB130AP0DP74 79 aa13.83□□□□□ -0.2
LIME1-201ENST00000309546 HTN1P15515 57 aa13.83□□□□□ -0.2
LIME1-201ENST00000309546 AZU1P20160 251 aa13.83□□□□□ -0.2
LIME1-201ENST00000309546 BAXQ07812 192 aa13.83□□□□□ -0.2
LIME1-201ENST00000309546 MZT2BQ6NZ67 158 aa13.83□□□□□ -0.2
LIME1-201ENST00000309546 WDR83OSQ9Y284 106 aa13.83□□□□□ -0.2
LIME1-201ENST00000309546 LYRM9A8MSI8 78 aa13.82□□□□□ -0.2
LIME1-201ENST00000309546 CDKN1BP46527 198 aa13.82□□□□□ -0.2
LIME1-201ENST00000309546 SULT1A1P50225 295 aa13.82□□□□□ -0.2
LIME1-201ENST00000309546 RAB32Q13637 225 aa13.82□□□□□ -0.2
LIME1-201ENST00000309546 STX12Q86Y82 276 aa13.82□□□□□ -0.2
LIME1-201ENST00000309546 DNAJC4Q9NNZ3 241 aa13.82□□□□□ -0.2
LIME1-201ENST00000309546 LYRM2Q9NU23 88 aaPredicted RBP13.82□□□□□ -0.2
LIME1-201ENST00000309546 IGLV2-18A0A075B6J9 118 aa13.81□□□□□ -0.2
LIME1-201ENST00000309546 TRAV5A0A0B4J249 113 aa13.81□□□□□ -0.2
LIME1-201ENST00000309546 IGSF23A1L1A6 192 aa13.81□□□□□ -0.2
LIME1-201ENST00000309546 IGLC2P0DOY2 106 aa13.81□□□□□ -0.2
LIME1-201ENST00000309546 TSPOP30536 169 aa13.81□□□□□ -0.2
LIME1-201ENST00000309546 TMEM256Q8N2U0 113 aa13.81□□□□□ -0.2
LIME1-201ENST00000309546 OR1L4Q8NGR5 311 aa13.81□□□□□ -0.2
LIME1-201ENST00000309546 PARD6GQ9BYG4 376 aaPredicted RBP13.81□□□□□ -0.2
LIME1-201ENST00000309546 PRAC2D3DTV9 90 aa13.8□□□□□ -0.2
LIME1-201ENST00000309546 H3BQ15 152 aa13.8□□□□□ -0.2
LIME1-201ENST00000309546 TAS2R60P59551 318 aa13.8□□□□□ -0.2
LIME1-201ENST00000309546 HBG1P69891 147 aa13.8□□□□□ -0.2
LIME1-201ENST00000309546 HBG2P69892 147 aa13.8□□□□□ -0.2
LIME1-201ENST00000309546 FCN2Q15485 313 aa13.8□□□□□ -0.2
LIME1-201ENST00000309546 LINC00336Q6ZUF6 198 aa13.8□□□□□ -0.2
LIME1-201ENST00000309546 TMEM252Q8N6L7 170 aa13.8□□□□□ -0.2
LIME1-201ENST00000309546 OR10J6PQ8NGY7 276 aa13.8□□□□□ -0.2
LIME1-201ENST00000309546 PFDN5Q99471 154 aa13.8□□□□□ -0.2
LIME1-201ENST00000309546 SLC39A9Q9NUM3 307 aa13.8□□□□□ -0.2
LIME1-201ENST00000309546 PXMP4Q9Y6I8 212 aa13.8□□□□□ -0.2
LIME1-201ENST00000309546 PLAC8L1A1L4L8 177 aa13.79□□□□□ -0.2
LIME1-201ENST00000309546 FGF7P21781 194 aa13.79□□□□□ -0.2
LIME1-201ENST00000309546 S100A11P31949 105 aa13.79□□□□□ -0.2
LIME1-201ENST00000309546 VWC2Q2TAL6 325 aa13.79□□□□□ -0.2
LIME1-201ENST00000309546 S100ZQ8WXG8 99 aa13.79□□□□□ -0.2
LIME1-201ENST00000309546 C16orf74Q96GX8 76 aa13.79□□□□□ -0.2
LIME1-201ENST00000309546 GPN1Q9HCN4 374 aaPredicted RBP13.79□□□□□ -0.2
LIME1-201ENST00000309546 NACAE9PAV3 2078 aa13.78□□□□□ -0.2
LIME1-201ENST00000309546 F5H768 121 aa13.78□□□□□ -0.2
LIME1-201ENST00000309546 IL15RAQ13261 267 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms