RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 ARV1Q9H2C2 271 aa12.31□□□□□ -0.44
CCDC28A-202ENST00000611852 SRD5A3Q9H8P0 318 aa12.31□□□□□ -0.44
CCDC28A-202ENST00000611852 SLC25A22Q9H936 323 aa12.31□□□□□ -0.44
CCDC28A-202ENST00000611852 NRN1Q9NPD7 142 aa12.31□□□□□ -0.44
CCDC28A-202ENST00000611852 LEMD1Q68G75 181 aa12.3□□□□□ -0.44
CCDC28A-202ENST00000611852 TMEM37Q8WXS4 190 aa12.3□□□□□ -0.44
CCDC28A-202ENST00000611852 CITED4Q96RK1 184 aa12.3□□□□□ -0.44
CCDC28A-202ENST00000611852 SCRT1Q9BWW7 348 aa12.3□□□□□ -0.44
CCDC28A-202ENST00000611852 SMIM3Q9BZL3 60 aa12.3□□□□□ -0.44
CCDC28A-202ENST00000611852 WDR61Q9GZS3 305 aaKnown RBP12.3□□□□□ -0.44
CCDC28A-202ENST00000611852 BCL2L11O43521 198 aa12.29□□□□□ -0.44
CCDC28A-202ENST00000611852 CMC4P56277 68 aaPredicted RBP12.29□□□□□ -0.44
CCDC28A-202ENST00000611852 B2MP61769 119 aa12.29□□□□□ -0.44
CCDC28A-202ENST00000611852 LINC00322Q6ZN03 302 aaPredicted RBP12.29□□□□□ -0.44
CCDC28A-202ENST00000611852 Q6ZRG5 221 aa12.29□□□□□ -0.44
CCDC28A-202ENST00000611852 SBSPONQ8IVN8 264 aa12.29□□□□□ -0.44
CCDC28A-202ENST00000611852 SLC25A32Q9H2D1 315 aa12.29□□□□□ -0.44
CCDC28A-202ENST00000611852 MAP6D1Q9H9H5 199 aa12.29□□□□□ -0.44
CCDC28A-202ENST00000611852 SLC39A9Q9NUM3 307 aa12.29□□□□□ -0.44
CCDC28A-202ENST00000611852 PXMP4Q9Y6I8 212 aa12.29□□□□□ -0.44
CCDC28A-202ENST00000611852 ELOA3CA0A087WX78 387 aaPredicted RBP12.28□□□□□ -0.44
CCDC28A-202ENST00000611852 RBMY1BA6NDE4 496 aaKnown RBP12.28□□□□□ -0.44
CCDC28A-202ENST00000611852 RBMY1EA6NEQ0 496 aaKnown RBP12.28□□□□□ -0.44
CCDC28A-202ENST00000611852 COX7A2P2O60397 106 aa12.28□□□□□ -0.44
CCDC28A-202ENST00000611852 RBMY1DP0C7P1 496 aaKnown RBP12.28□□□□□ -0.44
CCDC28A-202ENST00000611852 ZNF767PQ75MW2 155 aa12.28□□□□□ -0.44
CCDC28A-202ENST00000611852 S100A7AQ86SG5 101 aa12.28□□□□□ -0.44
CCDC28A-202ENST00000611852 APRG1Q8IVJ8 170 aa12.28□□□□□ -0.44
CCDC28A-202ENST00000611852 ASCL2Q99929 193 aa12.28□□□□□ -0.44
CCDC28A-202ENST00000611852 ARPC5LQ9BPX5 153 aa12.28□□□□□ -0.44
CCDC28A-202ENST00000611852 WFDC1Q9HC57 220 aa12.28□□□□□ -0.44
CCDC28A-202ENST00000611852 C10orf113Q5VZT2 155 aa12.27□□□□□ -0.44
CCDC28A-202ENST00000611852 LINC00305Q7Z4B0 112 aa12.27□□□□□ -0.44
CCDC28A-202ENST00000611852 SLC51BQ86UW2 128 aa12.27□□□□□ -0.44
CCDC28A-202ENST00000611852 GPR82Q96P67 336 aa12.27□□□□□ -0.44
CCDC28A-202ENST00000611852 DNAJC4Q9NNZ3 241 aa12.27□□□□□ -0.44
CCDC28A-202ENST00000611852 IFNA7P01567 189 aa12.27□□□□□ -0.45
CCDC28A-202ENST00000611852 IFNA5P01569 189 aa12.27□□□□□ -0.45
CCDC28A-202ENST00000611852 GALR1P47211 349 aa12.27□□□□□ -0.45
CCDC28A-202ENST00000611852 DEFB131AP59861 70 aa12.27□□□□□ -0.45
CCDC28A-202ENST00000611852 ZNF124Q15973 351 aa12.27□□□□□ -0.45
CCDC28A-202ENST00000611852 TEX261Q6UWH6 196 aa12.27□□□□□ -0.45
CCDC28A-202ENST00000611852 OR1L4Q8NGR5 311 aa12.27□□□□□ -0.45
CCDC28A-202ENST00000611852 ZNF688P0C7X2 276 aa12.26□□□□□ -0.45
CCDC28A-202ENST00000611852 HAGHQ16775 308 aa12.26□□□□□ -0.45
CCDC28A-202ENST00000611852 MORN5Q5VZ52 161 aa12.26□□□□□ -0.45
CCDC28A-202ENST00000611852 ZNF709Q8N972 641 aa12.26□□□□□ -0.45
CCDC28A-202ENST00000611852 C17orf77Q96MU5 243 aa12.26□□□□□ -0.45
CCDC28A-202ENST00000611852 PFDN5Q99471 154 aa12.26□□□□□ -0.45
CCDC28A-202ENST00000611852 RSG1Q9BU20 258 aa12.26□□□□□ -0.45
CCDC28A-202ENST00000611852 PARD6GQ9BYG4 376 aaPredicted RBP12.26□□□□□ -0.45
CCDC28A-202ENST00000611852 RNF24Q9Y225 148 aa12.26□□□□□ -0.45
CCDC28A-202ENST00000611852 SOCS3O14543 225 aa12.25□□□□□ -0.45
CCDC28A-202ENST00000611852 TAAR5O14804 337 aa12.25□□□□□ -0.45
CCDC28A-202ENST00000611852 NHLRC4P0CG21 123 aaPredicted RBP12.25□□□□□ -0.45
CCDC28A-202ENST00000611852 RPL7P18124 248 aaKnown RBP12.25□□□□□ -0.45
CCDC28A-202ENST00000611852 SCGB1C1Q8TD33 95 aa12.25□□□□□ -0.45
CCDC28A-202ENST00000611852 ZNF471Q9BX82 626 aaPredicted RBP12.25□□□□□ -0.45
CCDC28A-202ENST00000611852 SEPSECSQ9HD40 501 aaKnown RBP12.25□□□□□ -0.45
CCDC28A-202ENST00000611852 KCNIP2Q9NS61 270 aa12.25□□□□□ -0.45
CCDC28A-202ENST00000611852 COL7A1Q02388 2944 aa12.25□□□□□ -0.45
CCDC28A-202ENST00000611852 C17orf112F2Z3M2 114 aa12.24□□□□□ -0.45
CCDC28A-202ENST00000611852 SNRPD3P62318 126 aaKnown RBP12.24□□□□□ -0.45
CCDC28A-202ENST00000611852 GCSAMLQ5JQS6 135 aa12.24□□□□□ -0.45
CCDC28A-202ENST00000611852 GATAD1Q8WUU5 269 aa12.24□□□□□ -0.45
CCDC28A-202ENST00000611852 LOC102724200A0A096LPH7 203 aaPredicted RBP12.23□□□□□ -0.45
CCDC28A-202ENST00000611852 MRPS12O15235 138 aaKnown RBP12.23□□□□□ -0.45
CCDC28A-202ENST00000611852 MEOX2P50222 304 aa12.23□□□□□ -0.45
CCDC28A-202ENST00000611852 PSMG4Q5JS54 123 aa12.23□□□□□ -0.45
CCDC28A-202ENST00000611852 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.23□□□□□ -0.45
CCDC28A-202ENST00000611852 ZNF680Q8NEM1 530 aa12.23□□□□□ -0.45
CCDC28A-202ENST00000611852 ATF4P18848 351 aaPredicted RBP12.22□□□□□ -0.45
CCDC28A-202ENST00000611852 PSMB3P49720 205 aa12.22□□□□□ -0.45
CCDC28A-202ENST00000611852 EIF5AP63241 154 aaKnown RBP12.22□□□□□ -0.45
CCDC28A-202ENST00000611852 ZNF266Q14584 549 aa12.22□□□□□ -0.45
CCDC28A-202ENST00000611852 SAMD13Q5VXD3 122 aa12.22□□□□□ -0.45
CCDC28A-202ENST00000611852 TM2D3Q9BRN9 247 aa12.22□□□□□ -0.45
CCDC28A-202ENST00000611852 TRAV5A0A0B4J249 113 aa12.21□□□□□ -0.45
CCDC28A-202ENST00000611852 ISLRO14498 428 aa12.21□□□□□ -0.45
CCDC28A-202ENST00000611852 TPT1P13693 172 aaKnown RBP12.21□□□□□ -0.45
CCDC28A-202ENST00000611852 ID1P41134 155 aa12.21□□□□□ -0.45
CCDC28A-202ENST00000611852 BPIFA4PQ86YQ2 179 aa12.21□□□□□ -0.45
CCDC28A-202ENST00000611852 STOML3Q8TAV4 291 aa12.21□□□□□ -0.45
CCDC28A-202ENST00000611852 DNAH9Q9NYC9 4486 aa12.21□□□□□ -0.45
CCDC28A-202ENST00000611852 A0A087X0K7 114 aa12.21□□□□□ -0.46
CCDC28A-202ENST00000611852 RPL35AP18077 110 aaKnown RBP12.21□□□□□ -0.46
CCDC28A-202ENST00000611852 PHYHIPLQ96FC7 376 aa12.21□□□□□ -0.46
CCDC28A-202ENST00000611852 C16orf92Q96LL3 132 aa12.21□□□□□ -0.46
CCDC28A-202ENST00000611852 RFNGQ9Y644 331 aa12.21□□□□□ -0.46
CCDC28A-202ENST00000611852 KNCNA6PVL3 124 aa12.2□□□□□ -0.46
CCDC28A-202ENST00000611852 FFAR4Q5NUL3 377 aa12.2□□□□□ -0.46
CCDC28A-202ENST00000611852 FAM78BQ5VT40 261 aa12.2□□□□□ -0.46
CCDC28A-202ENST00000611852 LINC00052Q96N35 136 aa12.2□□□□□ -0.46
CCDC28A-202ENST00000611852 TIMM9Q9Y5J7 89 aa12.2□□□□□ -0.46
CCDC28A-202ENST00000611852 AGRNO00468 2067 aa12.2□□□□□ -0.46
CCDC28A-202ENST00000611852 BORCS7-ASMTA0A0B4J1R7 106 aa12.19□□□□□ -0.46
CCDC28A-202ENST00000611852 KIR2DL5BA0A0G2JN68 375 aa12.19□□□□□ -0.46
CCDC28A-202ENST00000611852 KIR2DL5BA0A0G2JPC4 375 aa12.19□□□□□ -0.46
CCDC28A-202ENST00000611852 JTBO76095 146 aa12.19□□□□□ -0.46
CCDC28A-202ENST00000611852 APOC4P55056 127 aa12.19□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms