RNA–Protein interactions for RNA: ENST00000607092.1

CUX1-220, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 559 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-220ENST00000607092 UCP1P25874 307 aa4.48□□□□□ -1.69
CUX1-220ENST00000607092 CCR6P51684 374 aa4.48□□□□□ -1.69
CUX1-220ENST00000607092 RND2P52198 227 aa4.48□□□□□ -1.69
CUX1-220ENST00000607092 PIGPP57054 158 aa4.48□□□□□ -1.69
CUX1-220ENST00000607092 UBE2MP61081 183 aaKnown RBP4.48□□□□□ -1.69
CUX1-220ENST00000607092 PSG9Q00887 426 aa4.48□□□□□ -1.69
CUX1-220ENST00000607092 SPINK9Q5DT21 86 aa4.48□□□□□ -1.69
CUX1-220ENST00000607092 PRSS54Q6PEW0 395 aa4.48□□□□□ -1.69
CUX1-220ENST00000607092 ZNF767PQ75MW2 155 aa4.48□□□□□ -1.69
CUX1-220ENST00000607092 S100A7AQ86SG5 101 aa4.48□□□□□ -1.69
CUX1-220ENST00000607092 C6orf223Q8N319 242 aa4.48□□□□□ -1.69
CUX1-220ENST00000607092 MAPKAPK5-AS1Q8N8E1 139 aa4.48□□□□□ -1.69
CUX1-220ENST00000607092 ARPC5LQ9BPX5 153 aa4.48□□□□□ -1.69
CUX1-220ENST00000607092 MAGT1Q9H0U3 335 aa4.48□□□□□ -1.69
CUX1-220ENST00000607092 C20orf85Q9H1P6 137 aa4.48□□□□□ -1.69
CUX1-220ENST00000607092 FNDC4Q9H6D8 234 aaPredicted RBP4.48□□□□□ -1.69
CUX1-220ENST00000607092 RPRMQ9NS64 109 aa4.48□□□□□ -1.69
CUX1-220ENST00000607092 PAIP2BQ9ULR5 123 aaKnown RBP4.48□□□□□ -1.69
CUX1-220ENST00000607092 U3KQ87 197 aa4.48□□□□□ -1.69
CUX1-220ENST00000607092 APOBP04114 4563 aaKnown RBP4.47□□□□□ -1.69
CUX1-220ENST00000607092 IGHV3OR16-12A0A075B7B8 117 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 NBDYA0A0U1RRE5 68 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 CEBPZOSA8MTT3 80 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 ADAP1O75689 374 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 CDS2O95674 445 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 ANXA3P12429 323 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 HTN3P15516 51 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 TSPOP30536 169 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 PAX9P55771 341 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 SUPT4H1P63272 117 aaKnown RBP4.47□□□□□ -1.69
CUX1-220ENST00000607092 CD300CQ08708 224 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 CLINT1Q14677 625 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 SURF2Q15527 256 aaPredicted RBP4.47□□□□□ -1.69
CUX1-220ENST00000607092 RNASE12Q5GAN4 147 aaKnown RBP4.47□□□□□ -1.69
CUX1-220ENST00000607092 TMEM88Q6PEY1 159 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 ZNF575Q86XF7 245 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 Q8N1X5 172 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 OR4B1Q8NGF8 309 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 OR51S1Q8NGJ8 323 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 TERB2Q8NHR7 220 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 RBPMSQ93062 196 aaKnown RBP4.47□□□□□ -1.69
CUX1-220ENST00000607092 RNF125Q96EQ8 232 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 IGF2BP2-AS1Q96M15 143 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 LINC00052Q96N35 136 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 GPR82Q96P67 336 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 TMEM222Q9H0R3 208 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 SLC45A2Q9UMX9 530 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 C14orf166Q9Y224 244 aaKnown RBP4.47□□□□□ -1.69
CUX1-220ENST00000607092 RNF24Q9Y225 148 aa4.47□□□□□ -1.69
CUX1-220ENST00000607092 YTHDF2Q9Y5A9 579 aaKnown RBP4.47□□□□□ -1.69
CUX1-220ENST00000607092 A0A0B4J2A0 478 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 TEX13DA0A0J9YY54 714 aaPredicted RBP4.46□□□□□ -1.7
CUX1-220ENST00000607092 ZFP92A6NM28 416 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 M0QYG6 137 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 SSNA1O43805 119 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 DUSP14O95147 198 aaKnown RBP4.46□□□□□ -1.7
CUX1-220ENST00000607092 INSP01308 110 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 ATP5G1P05496 136 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 PSG1P11464 419 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 GPX4P36969 197 aaPredicted RBP4.46□□□□□ -1.7
CUX1-220ENST00000607092 GALR1P47211 349 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 ATP5G3P48201 142 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 RAP2BP61225 183 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 FCN2Q15485 313 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 USF2Q15853 346 aaPredicted RBP4.46□□□□□ -1.7
CUX1-220ENST00000607092 NDUFA5Q16718 116 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 GGNBP1Q5YKI7 109 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 LHFPL1Q86WI0 220 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 OR8I2Q8N0Y5 310 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 TMEM256Q8N2U0 113 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 ZNF431Q8TF32 576 aaPredicted RBP4.46□□□□□ -1.7
CUX1-220ENST00000607092 NPIPB3Q92617 1050 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 IL22RA2Q969J5 263 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 ACY3Q96HD9 319 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 SLC35E1Q96K37 410 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 TP53RKQ96S44 253 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 PBDC1Q9BVG4 233 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 DOK5Q9P104 306 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 SHPKQ9UHJ6 478 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 KCNIP3Q9Y2W7 256 aa4.46□□□□□ -1.7
CUX1-220ENST00000607092 HERC1Q15751 4861 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 A0A0J9YX75 114 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 A0A1W2PPQ1 181 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 CBY3A6NI87 242 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 IGKV3-20P01619 116 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 GIPP09681 153 aaPredicted RBP4.45□□□□□ -1.7
CUX1-220ENST00000607092 OR4E1P0C645 316 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 SRPXP78539 464 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 IZUMO4Q1ZYL8 232 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 SCGB2B2Q4G0G5 96 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 TMEM128Q5BJH2 165 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 NMSQ5H8A3 153 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 FAM78BQ5VT40 261 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 LGI3Q8N145 548 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 C12orf45Q8N5I9 185 aaPredicted RBP4.45□□□□□ -1.7
CUX1-220ENST00000607092 OR11H7Q8NGC8 314 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 OR4D10Q8NGI6 311 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 OR4D5Q8NGN0 318 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 OR13C8Q8NGS7 320 aa4.45□□□□□ -1.7
CUX1-220ENST00000607092 OR10J6PQ8NGY7 276 aa4.45□□□□□ -1.7
Retrieved 100 of 20,778 RNA–protein pairs in 89.7 ms