RNA–Protein interactions for RNA: ENST00000600012.5

UPF1-208, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 5

Gene UPF1, Length 501 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-208ENST00000600012 GATAD1Q8WUU5 269 aa9.63□□□□□ -0.87
UPF1-208ENST00000600012 SFT2D1Q8WV19 159 aa9.63□□□□□ -0.87
UPF1-208ENST00000600012 MBD3L1Q8WWY6 194 aa9.63□□□□□ -0.87
UPF1-208ENST00000600012 RCHY1Q96PM5 261 aa9.63□□□□□ -0.87
UPF1-208ENST00000600012 DNAJC4Q9NNZ3 241 aa9.63□□□□□ -0.87
UPF1-208ENST00000600012 HIGD1AQ9Y241 93 aa9.63□□□□□ -0.87
UPF1-208ENST00000600012 IGHV4OR15-8A0A075B7B6 117 aa9.62□□□□□ -0.87
UPF1-208ENST00000600012 A0A087WW49 117 aa9.62□□□□□ -0.87
UPF1-208ENST00000600012 OVOL1O14753 267 aa9.62□□□□□ -0.87
UPF1-208ENST00000600012 ZNF207O43670 478 aaKnown RBP9.62□□□□□ -0.87
UPF1-208ENST00000600012 GGCTO75223 188 aaKnown RBP9.62□□□□□ -0.87
UPF1-208ENST00000600012 FAM209BQ5JX69 171 aa9.62□□□□□ -0.87
UPF1-208ENST00000600012 LINC00305Q7Z4B0 112 aa9.62□□□□□ -0.87
UPF1-208ENST00000600012 RNF2Q99496 336 aa9.62□□□□□ -0.87
UPF1-208ENST00000600012 MRPL32Q9BYC8 188 aaKnown RBP9.62□□□□□ -0.87
UPF1-208ENST00000600012 MRPL27Q9P0M9 148 aaKnown RBP9.62□□□□□ -0.87
UPF1-208ENST00000600012 ELOA3CA0A087WX78 387 aaPredicted RBP9.61□□□□□ -0.87
UPF1-208ENST00000600012 H3BRN7 92 aa9.61□□□□□ -0.87
UPF1-208ENST00000600012 HBE1P02100 147 aa9.61□□□□□ -0.87
UPF1-208ENST00000600012 STAG3L2P0CL84 134 aa9.61□□□□□ -0.87
UPF1-208ENST00000600012 STAG3L3P0CL85 134 aa9.61□□□□□ -0.87
UPF1-208ENST00000600012 ARL14EPLP0DKL9 152 aa9.61□□□□□ -0.87
UPF1-208ENST00000600012 CCL20P78556 96 aa9.61□□□□□ -0.87
UPF1-208ENST00000600012 LEMD1Q68G75 181 aa9.61□□□□□ -0.87
UPF1-208ENST00000600012 UNQ9165/PRO28630Q6UXU0 137 aa9.61□□□□□ -0.87
UPF1-208ENST00000600012 COMMD7Q86VX2 200 aa9.61□□□□□ -0.87
UPF1-208ENST00000600012 SBSPONQ8IVN8 264 aa9.61□□□□□ -0.87
UPF1-208ENST00000600012 IQCF2Q8IXL9 164 aa9.61□□□□□ -0.87
UPF1-208ENST00000600012 LYPD6BQ8NI32 183 aa9.61□□□□□ -0.87
UPF1-208ENST00000600012 C20orf24Q9BUV8 137 aa9.61□□□□□ -0.87
UPF1-208ENST00000600012 SCRT1Q9BWW7 348 aa9.61□□□□□ -0.87
UPF1-208ENST00000600012 SLC25A2Q9BXI2 301 aa9.61□□□□□ -0.87
UPF1-208ENST00000600012 TMPRSS5Q9H3S3 457 aa9.61□□□□□ -0.87
UPF1-208ENST00000600012 LINC00862A6NCI5 91 aa9.6□□□□□ -0.87
UPF1-208ENST00000600012 NDUFA4O00483 81 aa9.6□□□□□ -0.87
UPF1-208ENST00000600012 SAP30O75446 220 aa9.6□□□□□ -0.87
UPF1-208ENST00000600012 C8orf88P0DMB2 117 aa9.6□□□□□ -0.87
UPF1-208ENST00000600012 RPEL1Q2QD12 228 aa9.6□□□□□ -0.87
UPF1-208ENST00000600012 FAM167A-AS1Q96KT0 104 aa9.6□□□□□ -0.87
UPF1-208ENST00000600012 SHANK2-AS3Q9BTD1 123 aa9.6□□□□□ -0.87
UPF1-208ENST00000600012 SLC25A39Q9BZJ4 359 aaPredicted RBP9.6□□□□□ -0.87
UPF1-208ENST00000600012 TECRQ9NZ01 308 aaKnown RBP9.6□□□□□ -0.87
UPF1-208ENST00000600012 PFDN2Q9UHV9 154 aa9.6□□□□□ -0.87
UPF1-208ENST00000600012 RABAC1Q9UI14 185 aa9.6□□□□□ -0.87
UPF1-208ENST00000600012 IGHV3-49A0A0A0MS15 119 aa9.59□□□□□ -0.87
UPF1-208ENST00000600012 TRAV1-1A0A0B4J248 108 aa9.59□□□□□ -0.87
UPF1-208ENST00000600012 LINC01619G3V211 115 aa9.59□□□□□ -0.87
UPF1-208ENST00000600012 OR7C2O60412 319 aa9.59□□□□□ -0.87
UPF1-208ENST00000600012 HSPB1P04792 205 aaKnown RBP9.59□□□□□ -0.87
UPF1-208ENST00000600012 FRMD6-AS1P0C7T7 363 aa9.59□□□□□ -0.87
UPF1-208ENST00000600012 TAS2R45P59539 299 aa9.59□□□□□ -0.87
UPF1-208ENST00000600012 KHDC3LQ587J8 217 aa9.59□□□□□ -0.87
UPF1-208ENST00000600012 SLC7A5P1Q8MH63 180 aa9.59□□□□□ -0.87
UPF1-208ENST00000600012 TMEM190Q8WZ59 177 aa9.59□□□□□ -0.87
UPF1-208ENST00000600012 DLX4Q92988 240 aaPredicted RBP9.59□□□□□ -0.87
UPF1-208ENST00000600012 ZNF503Q96F45 646 aa9.59□□□□□ -0.87
UPF1-208ENST00000600012 ZMAT4Q9H898 229 aa9.59□□□□□ -0.87
UPF1-208ENST00000600012 TENM2Q9NT68 2774 aa9.59□□□□□ -0.87
UPF1-208ENST00000600012 ZNF320A2RRD8 509 aa9.58□□□□□ -0.88
UPF1-208ENST00000600012 CXorf1O96002 111 aa9.58□□□□□ -0.88
UPF1-208ENST00000600012 PYYP10082 97 aa9.58□□□□□ -0.88
UPF1-208ENST00000600012 GP9P14770 177 aa9.58□□□□□ -0.88
UPF1-208ENST00000600012 GCHFRP30047 84 aa9.58□□□□□ -0.88
UPF1-208ENST00000600012 SLURP1P55000 103 aa9.58□□□□□ -0.88
UPF1-208ENST00000600012 IL34Q6ZMJ4 242 aa9.58□□□□□ -0.88
UPF1-208ENST00000600012 GNG13Q9P2W3 67 aa9.58□□□□□ -0.88
UPF1-208ENST00000600012 HUWE1Q7Z6Z7 4374 aaKnown RBP9.58□□□□□ -0.88
UPF1-208ENST00000600012 IGHV3OR16-13A0A075B7E8 117 aa9.57□□□□□ -0.88
UPF1-208ENST00000600012 IGHV3-74A0A0B4J1X5 117 aa9.57□□□□□ -0.88
UPF1-208ENST00000600012 IGHV3-66A0A0C4DH42 116 aa9.57□□□□□ -0.88
UPF1-208ENST00000600012 ZNF98A6NK75 572 aa9.57□□□□□ -0.88
UPF1-208ENST00000600012 APOHP02749 345 aaPredicted RBP9.57□□□□□ -0.88
UPF1-208ENST00000600012 SNRPCP09234 159 aaKnown RBP9.57□□□□□ -0.88
UPF1-208ENST00000600012 OR10J4P0C629 311 aa9.57□□□□□ -0.88
UPF1-208ENST00000600012 EDN2P20800 178 aa9.57□□□□□ -0.88
UPF1-208ENST00000600012 GPHB5Q86YW7 130 aa9.57□□□□□ -0.88
UPF1-208ENST00000600012 CITED4Q96RK1 184 aa9.57□□□□□ -0.88
UPF1-208ENST00000600012 METTL26Q96S19 204 aa9.57□□□□□ -0.88
UPF1-208ENST00000600012 PAXXQ9BUH6 204 aa9.57□□□□□ -0.88
UPF1-208ENST00000600012 MED9Q9NWA0 146 aa9.57□□□□□ -0.88
UPF1-208ENST00000600012 DNAH7Q8WXX0 4024 aa9.57□□□□□ -0.88
UPF1-208ENST00000600012 SYNJ2BPP57105 145 aa9.56□□□□□ -0.88
UPF1-208ENST00000600012 UBE2L3P68036 154 aaKnown RBP9.56□□□□□ -0.88
UPF1-208ENST00000600012 NDUFA5Q16718 116 aa9.56□□□□□ -0.88
UPF1-208ENST00000600012 HAGHQ16775 308 aa9.56□□□□□ -0.88
UPF1-208ENST00000600012 FAM106AQ4KMX7 169 aa9.56□□□□□ -0.88
UPF1-208ENST00000600012 TM4SF20Q53R12 229 aa9.56□□□□□ -0.88
UPF1-208ENST00000600012 TOR2AQ5JU69 321 aa9.56□□□□□ -0.88
UPF1-208ENST00000600012 PQLC2Q6ZP29 291 aa9.56□□□□□ -0.88
UPF1-208ENST00000600012 MARC2Q969Z3 335 aa9.56□□□□□ -0.88
UPF1-208ENST00000600012 OR51M1Q9H341 326 aa9.56□□□□□ -0.88
UPF1-208ENST00000600012 TMEM231Q9H6L2 316 aa9.56□□□□□ -0.88
UPF1-208ENST00000600012 DYNC2H1Q8NCM8 4307 aaKnown RBP9.55□□□□□ -0.88
UPF1-208ENST00000600012 RYR2Q92736 4967 aa9.55□□□□□ -0.88
UPF1-208ENST00000600012 LCE6AA0A183 80 aa9.55□□□□□ -0.88
UPF1-208ENST00000600012 H3BTX0 84 aa9.55□□□□□ -0.88
UPF1-208ENST00000600012 ZP3P21754 424 aa9.55□□□□□ -0.88
UPF1-208ENST00000600012 NPPCP23582 126 aa9.55□□□□□ -0.88
UPF1-208ENST00000600012 CRYBB3P26998 211 aa9.55□□□□□ -0.88
UPF1-208ENST00000600012 UBE2G2P60604 165 aa9.55□□□□□ -0.88
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms