RNA–Protein interactions for RNA: ENST00000599538.5

VRK3-217, Transcript of vaccinia related kinase 3, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VRK3, Length 2,126 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-217ENST00000599538 IGLC2P0DOY2 106 aa11.29□□□□□ -0.6
VRK3-217ENST00000599538 C5orf17Q8NAS9 161 aa11.29□□□□□ -0.6
VRK3-217ENST00000599538 TMEM68Q96MH6 324 aa11.29□□□□□ -0.6
VRK3-217ENST00000599538 ATG101Q9BSB4 218 aa11.29□□□□□ -0.6
VRK3-217ENST00000599538 KLF12Q9Y4X4 402 aa11.29□□□□□ -0.6
VRK3-217ENST00000599538 TRBV19A0A075B6N1 114 aa11.28□□□□□ -0.6
VRK3-217ENST00000599538 A0A1B0GUS0 222 aa11.28□□□□□ -0.6
VRK3-217ENST00000599538 XKRY2A2RUG3 117 aa11.28□□□□□ -0.6
VRK3-217ENST00000599538 COL8A1P27658 744 aa11.28□□□□□ -0.6
VRK3-217ENST00000599538 UBE2G1P62253 170 aa11.28□□□□□ -0.6
VRK3-217ENST00000599538 RHOGP84095 191 aa11.28□□□□□ -0.6
VRK3-217ENST00000599538 LINC00322Q6ZN03 302 aaPredicted RBP11.28□□□□□ -0.6
VRK3-217ENST00000599538 BPIFA4PQ86YQ2 179 aa11.28□□□□□ -0.6
VRK3-217ENST00000599538 MS4A10Q96PG2 267 aa11.28□□□□□ -0.6
VRK3-217ENST00000599538 PITPNC1Q9UKF7 332 aa11.28□□□□□ -0.6
VRK3-217ENST00000599538 ZNF705GA8MUZ8 300 aaPredicted RBP11.27□□□□□ -0.6
VRK3-217ENST00000599538 NUDT10Q8NFP7 164 aa11.27□□□□□ -0.6
VRK3-217ENST00000599538 NUDT11Q96G61 164 aa11.27□□□□□ -0.6
VRK3-217ENST00000599538 ASCL2Q99929 193 aa11.27□□□□□ -0.6
VRK3-217ENST00000599538 HIF1ANQ9NWT6 349 aa11.27□□□□□ -0.6
VRK3-217ENST00000599538 GAR1Q9NY12 217 aaKnown RBP11.27□□□□□ -0.6
VRK3-217ENST00000599538 SMIM6P0DI80 62 aa11.27□□□□□ -0.61
VRK3-217ENST00000599538 FABP4P15090 132 aa11.27□□□□□ -0.61
VRK3-217ENST00000599538 GPR183P32249 361 aa11.27□□□□□ -0.61
VRK3-217ENST00000599538 LY6EQ16553 131 aa11.27□□□□□ -0.61
VRK3-217ENST00000599538 MAPK1IP1LQ8NDC0 245 aa11.27□□□□□ -0.61
VRK3-217ENST00000599538 OR10D4PQ8NGN7 298 aa11.27□□□□□ -0.61
VRK3-217ENST00000599538 BTF3L4Q96K17 158 aa11.27□□□□□ -0.61
VRK3-217ENST00000599538 TCEAL7Q9BRU2 100 aa11.27□□□□□ -0.61
VRK3-217ENST00000599538 MLST8Q9BVC4 326 aa11.27□□□□□ -0.61
VRK3-217ENST00000599538 TRBV9A0A0B4J1U6 114 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 IER3P46695 156 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 KRTAP10-9P60411 292 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 PYY3Q5JQD4 70 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 CDPF1Q6NVV7 123 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 SIGLEC15Q6ZMC9 328 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 ZNF502Q8TBZ5 544 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 MEGF9Q9H1U4 602 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 OTORQ9NRC9 128 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 IGLV2-11P01706 119 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 S100A9P06702 114 aaKnown RBP11.26□□□□□ -0.61
VRK3-217ENST00000599538 GOLT1AQ6ZVE7 132 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 TMEM183AQ8IXX5 376 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 OR4F17Q8NGA8 305 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 MBD6Q96DN6 1003 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 CCDC140Q96MF4 163 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 GPR82Q96P67 336 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 HIST1H2BLQ99880 126 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 MOB4Q9Y3A3 225 aa11.26□□□□□ -0.61
VRK3-217ENST00000599538 SMIM27A0A1W2PRY6 76 aa11.25□□□□□ -0.61
VRK3-217ENST00000599538 M0R3E3 92 aa11.25□□□□□ -0.61
VRK3-217ENST00000599538 CLEC3BP05452 202 aa11.25□□□□□ -0.61
VRK3-217ENST00000599538 COX6B1P14854 86 aa11.25□□□□□ -0.61
VRK3-217ENST00000599538 TRAV9-1A0A075B6T8 112 aa11.24□□□□□ -0.61
VRK3-217ENST00000599538 H3BUX3 64 aa11.24□□□□□ -0.61
VRK3-217ENST00000599538 LTAP01374 205 aa11.24□□□□□ -0.61
VRK3-217ENST00000599538 KLK9Q2XQG4 91 aa11.24□□□□□ -0.61
VRK3-217ENST00000599538 COA6Q5JTJ3 125 aaKnown RBP11.24□□□□□ -0.61
VRK3-217ENST00000599538 VN1R17PQ8TDU5 208 aa11.24□□□□□ -0.61
VRK3-217ENST00000599538 NIT2Q9NQR4 276 aa11.24□□□□□ -0.61
VRK3-217ENST00000599538 KLK9Q9UKQ9 250 aa11.24□□□□□ -0.61
VRK3-217ENST00000599538 GRIFINA4D1Z8 144 aa11.24□□□□□ -0.61
VRK3-217ENST00000599538 SNURFLB1AK76 121 aa11.24□□□□□ -0.61
VRK3-217ENST00000599538 S100A2P29034 98 aa11.24□□□□□ -0.61
VRK3-217ENST00000599538 C9orf152Q5JTZ5 239 aa11.24□□□□□ -0.61
VRK3-217ENST00000599538 MRPL54Q6P161 138 aaKnown RBP11.24□□□□□ -0.61
VRK3-217ENST00000599538 CLEC19AQ6UXS0 136 aa11.24□□□□□ -0.61
VRK3-217ENST00000599538 FAM231DQ6ZW35 169 aa11.24□□□□□ -0.61
VRK3-217ENST00000599538 CIARTQ8N365 385 aaPredicted RBP11.24□□□□□ -0.61
VRK3-217ENST00000599538 FMC1Q96HJ9 113 aa11.24□□□□□ -0.61
VRK3-217ENST00000599538 MRPL18Q9H0U6 180 aaKnown RBP11.24□□□□□ -0.61
VRK3-217ENST00000599538 A0A096LNT2 108 aa11.23□□□□□ -0.61
VRK3-217ENST00000599538 B4DSR2 109 aa11.23□□□□□ -0.61
VRK3-217ENST00000599538 GATCO43716 136 aaKnown RBP11.23□□□□□ -0.61
VRK3-217ENST00000599538 NUPR1O60356 82 aa11.23□□□□□ -0.61
VRK3-217ENST00000599538 Q6ZS46 218 aa11.23□□□□□ -0.61
VRK3-217ENST00000599538 TMEM256Q8N2U0 113 aa11.23□□□□□ -0.61
VRK3-217ENST00000599538 CMTM2Q8TAZ6 248 aa11.23□□□□□ -0.61
VRK3-217ENST00000599538 TXN2Q99757 166 aa11.23□□□□□ -0.61
VRK3-217ENST00000599538 ZNF785A8K8V0 405 aa11.23□□□□□ -0.61
VRK3-217ENST00000599538 AMBPP02760 352 aa11.23□□□□□ -0.61
VRK3-217ENST00000599538 C19orf54Q5BKX5 351 aa11.23□□□□□ -0.61
VRK3-217ENST00000599538 TOMM20LQ6UXN7 152 aa11.23□□□□□ -0.61
VRK3-217ENST00000599538 PRNTQ86SH4 94 aa11.23□□□□□ -0.61
VRK3-217ENST00000599538 Q86TA4 180 aa11.23□□□□□ -0.61
VRK3-217ENST00000599538 SMAD5-AS1Q9Y6J3 95 aa11.23□□□□□ -0.61
VRK3-217ENST00000599538 PAX1P15863 534 aa11.22□□□□□ -0.61
VRK3-217ENST00000599538 NOL4LQ96MY1 436 aaPredicted RBP11.22□□□□□ -0.61
VRK3-217ENST00000599538 ZFAND3Q9H8U3 227 aa11.22□□□□□ -0.61
VRK3-217ENST00000599538 TRAV41A0A0B4J266 112 aa11.21□□□□□ -0.61
VRK3-217ENST00000599538 BLCAPP62952 87 aa11.21□□□□□ -0.61
VRK3-217ENST00000599538 IGFL4Q6B9Z1 124 aa11.21□□□□□ -0.61
VRK3-217ENST00000599538 TMEM136Q6ZRR5 245 aa11.21□□□□□ -0.61
VRK3-217ENST00000599538 PACRGQ96M98 296 aaPredicted RBP11.21□□□□□ -0.61
VRK3-217ENST00000599538 GNB4Q9HAV0 340 aa11.21□□□□□ -0.61
VRK3-217ENST00000599538 TP53TG3Q9ULZ0 132 aa11.21□□□□□ -0.61
VRK3-217ENST00000599538 NAV2Q8IVL1 2488 aa11.21□□□□□ -0.61
VRK3-217ENST00000599538 C19orf71A6NCJ1 209 aa11.21□□□□□ -0.62
VRK3-217ENST00000599538 A6NDX4 124 aa11.21□□□□□ -0.62
VRK3-217ENST00000599538 KIAA1644Q3SXP7 199 aa11.21□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms