RNA–Protein interactions for RNA: ENST00000599322.5

LIG1-218, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-218ENST00000599322 FOXI2Q6ZQN5 318 aa10.35□□□□□ -0.75
LIG1-218ENST00000599322 Q6ZRG5 221 aa10.35□□□□□ -0.75
LIG1-218ENST00000599322 OR4B1Q8NGF8 309 aa10.35□□□□□ -0.75
LIG1-218ENST00000599322 C11orf45Q8TAV5 145 aa10.35□□□□□ -0.75
LIG1-218ENST00000599322 SLC25A39Q9BZJ4 359 aaPredicted RBP10.35□□□□□ -0.75
LIG1-218ENST00000599322 SLC25A32Q9H2D1 315 aa10.35□□□□□ -0.75
LIG1-218ENST00000599322 H3BMM0 161 aa10.34□□□□□ -0.75
LIG1-218ENST00000599322 COX7A2P2O60397 106 aa10.34□□□□□ -0.75
LIG1-218ENST00000599322 CCNKO75909 580 aa10.34□□□□□ -0.75
LIG1-218ENST00000599322 CST7O76096 145 aa10.34□□□□□ -0.75
LIG1-218ENST00000599322 HLA-DRB4P13762 266 aa10.34□□□□□ -0.75
LIG1-218ENST00000599322 PLP1P60201 277 aa10.34□□□□□ -0.75
LIG1-218ENST00000599322 ATP6V1FQ16864 119 aa10.34□□□□□ -0.75
LIG1-218ENST00000599322 SHANK2-AS3Q9BTD1 123 aa10.34□□□□□ -0.75
LIG1-218ENST00000599322 C11orf68Q9H3H3 251 aaKnown RBP10.34□□□□□ -0.75
LIG1-218ENST00000599322 UQCC1Q9NVA1 299 aa10.34□□□□□ -0.75
LIG1-218ENST00000599322 HLA-DRB4X5D2U9 266 aa10.34□□□□□ -0.75
LIG1-218ENST00000599322 ELOA3CA0A087WX78 387 aaPredicted RBP10.33□□□□□ -0.76
LIG1-218ENST00000599322 FAM24AA6NFZ4 105 aa10.33□□□□□ -0.76
LIG1-218ENST00000599322 AGPAT2O15120 278 aa10.33□□□□□ -0.76
LIG1-218ENST00000599322 SSNA1O43805 119 aa10.33□□□□□ -0.76
LIG1-218ENST00000599322 IGKV3-20P01619 116 aa10.33□□□□□ -0.76
LIG1-218ENST00000599322 CAMLGP49069 296 aa10.33□□□□□ -0.76
LIG1-218ENST00000599322 SULT1A1P50225 295 aa10.33□□□□□ -0.76
LIG1-218ENST00000599322 RAB32Q13637 225 aa10.33□□□□□ -0.76
LIG1-218ENST00000599322 TMEM182Q6ZP80 229 aaPredicted RBP10.33□□□□□ -0.76
LIG1-218ENST00000599322 NRARPQ7Z6K4 114 aa10.33□□□□□ -0.76
LIG1-218ENST00000599322 SLC25A31Q9H0C2 315 aa10.33□□□□□ -0.76
LIG1-218ENST00000599322 ARV1Q9H2C2 271 aa10.33□□□□□ -0.76
LIG1-218ENST00000599322 SAV1Q9H4B6 383 aaPredicted RBP10.33□□□□□ -0.76
LIG1-218ENST00000599322 XCL2Q9UBD3 114 aa10.33□□□□□ -0.76
LIG1-218ENST00000599322 H3BRN7 92 aa10.32□□□□□ -0.76
LIG1-218ENST00000599322 DUSP14O95147 198 aaKnown RBP10.32□□□□□ -0.76
LIG1-218ENST00000599322 CEMP1Q6PRD7 247 aaPredicted RBP10.32□□□□□ -0.76
LIG1-218ENST00000599322 OR1L4Q8NGR5 311 aa10.32□□□□□ -0.76
LIG1-218ENST00000599322 SCRT1Q9BWW7 348 aa10.32□□□□□ -0.76
LIG1-218ENST00000599322 LYRM2Q9NU23 88 aaPredicted RBP10.32□□□□□ -0.76
LIG1-218ENST00000599322 PPP1R14DQ9NXH3 145 aa10.32□□□□□ -0.76
LIG1-218ENST00000599322 E5RGE8 158 aa10.31□□□□□ -0.76
LIG1-218ENST00000599322 PSG9Q00887 426 aa10.31□□□□□ -0.76
LIG1-218ENST00000599322 BAXQ07812 192 aa10.31□□□□□ -0.76
LIG1-218ENST00000599322 C10orf113Q5VZT2 155 aa10.31□□□□□ -0.76
LIG1-218ENST00000599322 LINC00305Q7Z4B0 112 aa10.31□□□□□ -0.76
LIG1-218ENST00000599322 BPIFA4PQ86YQ2 179 aa10.31□□□□□ -0.76
LIG1-218ENST00000599322 TMEM252Q8N6L7 170 aa10.31□□□□□ -0.76
LIG1-218ENST00000599322 CLUHP3Q96NS8 147 aa10.31□□□□□ -0.76
LIG1-218ENST00000599322 PFDN5Q99471 154 aa10.31□□□□□ -0.76
LIG1-218ENST00000599322 NMES1Q9C002 83 aa10.31□□□□□ -0.76
LIG1-218ENST00000599322 CLEC5AQ9NY25 188 aa10.31□□□□□ -0.76
LIG1-218ENST00000599322 SOCS3O14543 225 aa10.3□□□□□ -0.76
LIG1-218ENST00000599322 AMBPP02760 352 aa10.3□□□□□ -0.76
LIG1-218ENST00000599322 PET100P0DJ07 73 aa10.3□□□□□ -0.76
LIG1-218ENST00000599322 C4BPBP20851 252 aa10.3□□□□□ -0.76
LIG1-218ENST00000599322 ARL16Q0P5N6 197 aa10.3□□□□□ -0.76
LIG1-218ENST00000599322 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa10.3□□□□□ -0.76
LIG1-218ENST00000599322 PHLDA1Q8WV24 401 aaPredicted RBP10.3□□□□□ -0.76
LIG1-218ENST00000599322 UHRF2Q96PU4 802 aa10.3□□□□□ -0.76
LIG1-218ENST00000599322 MARVELD1Q9BSK0 173 aa10.3□□□□□ -0.76
LIG1-218ENST00000599322 GOLT1BQ9Y3E0 138 aa10.3□□□□□ -0.76
LIG1-218ENST00000599322 IGHV4-28A0A0C4DH34 117 aa10.29□□□□□ -0.76
LIG1-218ENST00000599322 UBE2L5PA0A1B0GUS4 154 aa10.29□□□□□ -0.76
LIG1-218ENST00000599322 ZNF705EA8MWA4 302 aaPredicted RBP10.29□□□□□ -0.76
LIG1-218ENST00000599322 DEFB4AO15263 64 aa10.29□□□□□ -0.76
LIG1-218ENST00000599322 MPDU1O75352 247 aa10.29□□□□□ -0.76
LIG1-218ENST00000599322 LRRC37A5PQ49AS3 106 aa10.29□□□□□ -0.76
LIG1-218ENST00000599322 FAM78BQ5VT40 261 aa10.29□□□□□ -0.76
LIG1-218ENST00000599322 ZNF709Q8N972 641 aa10.29□□□□□ -0.76
LIG1-218ENST00000599322 ZNF738Q8NE65 137 aa10.29□□□□□ -0.76
LIG1-218ENST00000599322 MGST2Q99735 147 aa10.29□□□□□ -0.76
LIG1-218ENST00000599322 DNAJC4Q9NNZ3 241 aa10.29□□□□□ -0.76
LIG1-218ENST00000599322 WDR83OSQ9Y284 106 aa10.29□□□□□ -0.76
LIG1-218ENST00000599322 ALMS1Q8TCU4 4167 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 IGHV3OR16-12A0A075B7B8 117 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 A0A0J9YX75 114 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 TMEM189A5PLL7 270 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 SMIM9A6NGZ8 99 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 C11orf94C9JXX5 98 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 SIX6O95475 246 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 GIG44P09565 113 aaPredicted RBP10.28□□□□□ -0.76
LIG1-218ENST00000599322 CXCL2P19875 107 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 FGF7P21781 194 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 FXYD7P58549 80 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 NANOS2P60321 138 aaKnown RBP10.28□□□□□ -0.76
LIG1-218ENST00000599322 IFITM3Q01628 133 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 IL15RAQ13261 267 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 GDF5OSQ5U4N7 250 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 LCN15Q6UWW0 184 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 TMEM208Q9BTX3 173 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 HRH4Q9H3N8 390 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 KCNIP2Q9NS61 270 aa10.28□□□□□ -0.76
LIG1-218ENST00000599322 A0A087X0K7 114 aa10.27□□□□□ -0.77
LIG1-218ENST00000599322 IGSF23A1L1A6 192 aa10.27□□□□□ -0.77
LIG1-218ENST00000599322 RPL29P47914 159 aaKnown RBP10.27□□□□□ -0.77
LIG1-218ENST00000599322 B2MP61769 119 aa10.27□□□□□ -0.77
LIG1-218ENST00000599322 RHOBP62745 196 aa10.27□□□□□ -0.77
LIG1-218ENST00000599322 EWSR1Q01844 656 aaKnown RBP eCLIP10.27□□□□□ -0.77
LIG1-218ENST00000599322 Q8NAQ8 132 aa10.27□□□□□ -0.77
LIG1-218ENST00000599322 CSNK1G2-AS1Q8NCQ2 148 aa10.27□□□□□ -0.77
LIG1-218ENST00000599322 SLC50A1Q9BRV3 221 aa10.27□□□□□ -0.77
LIG1-218ENST00000599322 C11orf1Q9H5F2 150 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 29.8 ms