RNA–Protein interactions for RNA: ENST00000597136.1

TRIM28-207, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 1,552 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-207ENST00000597136 S100A7AQ86SG5 101 aa11.33□□□□□ -0.6
TRIM28-207ENST00000597136 RNF141Q8WVD5 230 aa11.33□□□□□ -0.6
TRIM28-207ENST00000597136 SHANK2-AS3Q9BTD1 123 aa11.33□□□□□ -0.6
TRIM28-207ENST00000597136 AURKAIP1Q9NWT8 199 aaPredicted RBP11.33□□□□□ -0.6
TRIM28-207ENST00000597136 FUT9Q9Y231 359 aa11.33□□□□□ -0.6
TRIM28-207ENST00000597136 A0A1W2PPV4 95 aa11.32□□□□□ -0.6
TRIM28-207ENST00000597136 ZNF98A6NK75 572 aa11.32□□□□□ -0.6
TRIM28-207ENST00000597136 ZNF726P1Q15940 193 aa11.32□□□□□ -0.6
TRIM28-207ENST00000597136 MIR17HGQ75NE6 70 aa11.32□□□□□ -0.6
TRIM28-207ENST00000597136 FAM213BQ8TBF2 198 aa11.32□□□□□ -0.6
TRIM28-207ENST00000597136 RAB24Q969Q5 203 aa11.32□□□□□ -0.6
TRIM28-207ENST00000597136 PRR25Q96S07 402 aa11.32□□□□□ -0.6
TRIM28-207ENST00000597136 SCRT1Q9BWW7 348 aa11.32□□□□□ -0.6
TRIM28-207ENST00000597136 MRPL32Q9BYC8 188 aaKnown RBP11.32□□□□□ -0.6
TRIM28-207ENST00000597136 ACTR3CQ9C0K3 210 aaPredicted RBP11.32□□□□□ -0.6
TRIM28-207ENST00000597136 SLC25A22Q9H936 323 aa11.32□□□□□ -0.6
TRIM28-207ENST00000597136 UBQLN2Q9UHD9 624 aa11.32□□□□□ -0.6
TRIM28-207ENST00000597136 PFDN2Q9UHV9 154 aa11.32□□□□□ -0.6
TRIM28-207ENST00000597136 COL7A1Q02388 2944 aa11.31□□□□□ -0.6
TRIM28-207ENST00000597136 IGHV3-49A0A0A0MS15 119 aa11.31□□□□□ -0.6
TRIM28-207ENST00000597136 TRAV5A0A0B4J249 113 aa11.31□□□□□ -0.6
TRIM28-207ENST00000597136 IGHV7-4-1A0A0J9YVY3 117 aa11.31□□□□□ -0.6
TRIM28-207ENST00000597136 S100A7P31151 101 aa11.31□□□□□ -0.6
TRIM28-207ENST00000597136 CDC34P49427 236 aaPredicted RBP11.31□□□□□ -0.6
TRIM28-207ENST00000597136 LEMD1Q68G75 181 aa11.31□□□□□ -0.6
TRIM28-207ENST00000597136 SSX7Q7RTT5 188 aa11.31□□□□□ -0.6
TRIM28-207ENST00000597136 SIGLEC8Q9NYZ4 499 aa11.31□□□□□ -0.6
TRIM28-207ENST00000597136 SMPXQ9UHP9 88 aa11.31□□□□□ -0.6
TRIM28-207ENST00000597136 AGRNO00468 2067 aa11.31□□□□□ -0.6
TRIM28-207ENST00000597136 IGHV3OR16-13A0A075B7E8 117 aa11.3□□□□□ -0.6
TRIM28-207ENST00000597136 IGHV3-74A0A0B4J1X5 117 aa11.3□□□□□ -0.6
TRIM28-207ENST00000597136 IGHV3-66A0A0C4DH42 116 aa11.3□□□□□ -0.6
TRIM28-207ENST00000597136 CTXND1A0A1B0GTU2 59 aa11.3□□□□□ -0.6
TRIM28-207ENST00000597136 ZNF705EA8MWA4 302 aaPredicted RBP11.3□□□□□ -0.6
TRIM28-207ENST00000597136 BUB3O43684 328 aa11.3□□□□□ -0.6
TRIM28-207ENST00000597136 EIF3GO75821 320 aaKnown RBP eCLIP11.3□□□□□ -0.6
TRIM28-207ENST00000597136 C8orf88P0DMB2 117 aa11.3□□□□□ -0.6
TRIM28-207ENST00000597136 DEFB114Q30KQ6 69 aa11.3□□□□□ -0.6
TRIM28-207ENST00000597136 NARS2Q96I59 477 aaKnown RBP11.3□□□□□ -0.6
TRIM28-207ENST00000597136 MLXQ9UH92 298 aa11.3□□□□□ -0.6
TRIM28-207ENST00000597136 K7EIL1 84 aa11.29□□□□□ -0.6
TRIM28-207ENST00000597136 HMGB3O15347 200 aaKnown RBP11.29□□□□□ -0.6
TRIM28-207ENST00000597136 CD300EQ496F6 205 aaPredicted RBP11.29□□□□□ -0.6
TRIM28-207ENST00000597136 C1orf194Q5T5A4 169 aa11.29□□□□□ -0.6
TRIM28-207ENST00000597136 ZNF767PQ75MW2 155 aa11.29□□□□□ -0.6
TRIM28-207ENST00000597136 MARC2Q969Z3 335 aa11.29□□□□□ -0.6
TRIM28-207ENST00000597136 FAM167A-AS1Q96KT0 104 aa11.29□□□□□ -0.6
TRIM28-207ENST00000597136 RHPN1-AS1Q9BWJ2 59 aa11.29□□□□□ -0.6
TRIM28-207ENST00000597136 SLC25A2Q9BXI2 301 aa11.29□□□□□ -0.6
TRIM28-207ENST00000597136 TECRQ9NZ01 308 aaKnown RBP11.29□□□□□ -0.6
TRIM28-207ENST00000597136 A0A1W2PS18 150 aa11.28□□□□□ -0.6
TRIM28-207ENST00000597136 CHEK1O14757 476 aa11.28□□□□□ -0.6
TRIM28-207ENST00000597136 C16orf54Q6UWD8 224 aa11.28□□□□□ -0.6
TRIM28-207ENST00000597136 MBD3L1Q8WWY6 194 aa11.28□□□□□ -0.6
TRIM28-207ENST00000597136 SAT2Q96F10 170 aaPredicted RBP11.28□□□□□ -0.6
TRIM28-207ENST00000597136 RNF24Q9Y225 148 aa11.28□□□□□ -0.6
TRIM28-207ENST00000597136 ZNF256Q9Y2P7 627 aaPredicted RBP11.28□□□□□ -0.6
TRIM28-207ENST00000597136 ZNF785A8K8V0 405 aa11.28□□□□□ -0.6
TRIM28-207ENST00000597136 H2AFB1P0C5Y9 115 aa11.28□□□□□ -0.6
TRIM28-207ENST00000597136 STAG3L2P0CL84 134 aa11.28□□□□□ -0.6
TRIM28-207ENST00000597136 STAG3L3P0CL85 134 aa11.28□□□□□ -0.6
TRIM28-207ENST00000597136 TAS2R45P59539 299 aa11.28□□□□□ -0.6
TRIM28-207ENST00000597136 LCN15Q6UWW0 184 aa11.28□□□□□ -0.6
TRIM28-207ENST00000597136 OR8I2Q8N0Y5 310 aa11.28□□□□□ -0.6
TRIM28-207ENST00000597136 LRRC20Q8TCA0 184 aa11.28□□□□□ -0.6
TRIM28-207ENST00000597136 DYNLRB2Q8TF09 96 aa11.28□□□□□ -0.6
TRIM28-207ENST00000597136 SFT2D1Q8WV19 159 aa11.28□□□□□ -0.6
TRIM28-207ENST00000597136 GRAMD2BQ96HH9 432 aa11.28□□□□□ -0.6
TRIM28-207ENST00000597136 MAP1LC3B2A6NCE7 125 aa11.27□□□□□ -0.61
TRIM28-207ENST00000597136 RGS13O14921 159 aa11.27□□□□□ -0.61
TRIM28-207ENST00000597136 BMI1P35226 326 aa11.27□□□□□ -0.61
TRIM28-207ENST00000597136 BLOC1S1P78537 153 aa11.27□□□□□ -0.61
TRIM28-207ENST00000597136 KHDC3LQ587J8 217 aa11.27□□□□□ -0.61
TRIM28-207ENST00000597136 GLMPQ8WWB7 406 aa11.27□□□□□ -0.61
TRIM28-207ENST00000597136 ZNF503Q96F45 646 aa11.27□□□□□ -0.61
TRIM28-207ENST00000597136 MAP1LC3BQ9GZQ8 125 aa11.27□□□□□ -0.61
TRIM28-207ENST00000597136 TMEM231Q9H6L2 316 aa11.27□□□□□ -0.61
TRIM28-207ENST00000597136 TRAV1-1A0A0B4J248 108 aa11.26□□□□□ -0.61
TRIM28-207ENST00000597136 ARL14EPLP0DKL9 152 aa11.26□□□□□ -0.61
TRIM28-207ENST00000597136 GP9P14770 177 aa11.26□□□□□ -0.61
TRIM28-207ENST00000597136 PQLC2Q6ZP29 291 aa11.26□□□□□ -0.61
TRIM28-207ENST00000597136 BPIFA4PQ86YQ2 179 aa11.26□□□□□ -0.61
TRIM28-207ENST00000597136 TMEM61Q8N0U2 210 aa11.26□□□□□ -0.61
TRIM28-207ENST00000597136 STXBP6Q8NFX7 210 aa11.26□□□□□ -0.61
TRIM28-207ENST00000597136 PCNPQ8WW12 178 aaKnown RBP11.26□□□□□ -0.61
TRIM28-207ENST00000597136 GPR82Q96P67 336 aa11.26□□□□□ -0.61
TRIM28-207ENST00000597136 TMEM14CQ9P0S9 112 aa11.26□□□□□ -0.61
TRIM28-207ENST00000597136 MRPS12O15235 138 aaKnown RBP11.25□□□□□ -0.61
TRIM28-207ENST00000597136 OR7C2O60412 319 aa11.25□□□□□ -0.61
TRIM28-207ENST00000597136 CXorf1O96002 111 aa11.25□□□□□ -0.61
TRIM28-207ENST00000597136 NMBP08949 121 aa11.25□□□□□ -0.61
TRIM28-207ENST00000597136 PYYP10082 97 aa11.25□□□□□ -0.61
TRIM28-207ENST00000597136 RPL7P18124 248 aaKnown RBP11.25□□□□□ -0.61
TRIM28-207ENST00000597136 FGF8P55075 233 aaPredicted RBP11.25□□□□□ -0.61
TRIM28-207ENST00000597136 PAXXQ9BUH6 204 aa11.25□□□□□ -0.61
TRIM28-207ENST00000597136 OR51M1Q9H341 326 aa11.25□□□□□ -0.61
TRIM28-207ENST00000597136 NBEAL2Q6ZNJ1 2754 aa11.25□□□□□ -0.61
TRIM28-207ENST00000597136 DEFB121Q5J5C9 76 aa11.24□□□□□ -0.61
TRIM28-207ENST00000597136 SIGLEC15Q6ZMC9 328 aa11.24□□□□□ -0.61
TRIM28-207ENST00000597136 LYPD6BQ8NI32 183 aa11.24□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms