RNA–Protein interactions for RNA: ENST00000594862.1

SHKBP1-204, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 623 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-204ENST00000594862 CCNKO75909 580 aa12.91□□□□□ -0.34
SHKBP1-204ENST00000594862 OR5G3P0C626 314 aa12.91□□□□□ -0.34
SHKBP1-204ENST00000594862 S100A10P60903 97 aa12.91□□□□□ -0.34
SHKBP1-204ENST00000594862 EWSR1Q01844 656 aaKnown RBP eCLIP12.91□□□□□ -0.34
SHKBP1-204ENST00000594862 TMEM182Q6ZP80 229 aaPredicted RBP12.91□□□□□ -0.34
SHKBP1-204ENST00000594862 STX12Q86Y82 276 aa12.91□□□□□ -0.34
SHKBP1-204ENST00000594862 Q8NAQ8 132 aa12.91□□□□□ -0.34
SHKBP1-204ENST00000594862 RSG1Q9BU20 258 aa12.91□□□□□ -0.34
SHKBP1-204ENST00000594862 HRH4Q9H3N8 390 aa12.91□□□□□ -0.34
SHKBP1-204ENST00000594862 DOK5Q9P104 306 aa12.91□□□□□ -0.34
SHKBP1-204ENST00000594862 HBG1P69891 147 aa12.9□□□□□ -0.34
SHKBP1-204ENST00000594862 HBG2P69892 147 aa12.9□□□□□ -0.34
SHKBP1-204ENST00000594862 SLC38A11Q08AI6 406 aa12.9□□□□□ -0.34
SHKBP1-204ENST00000594862 CSNK1G2-AS1Q8NCQ2 148 aa12.9□□□□□ -0.34
SHKBP1-204ENST00000594862 SCRT1Q9BWW7 348 aa12.9□□□□□ -0.34
SHKBP1-204ENST00000594862 LYRM2Q9NU23 88 aaPredicted RBP12.9□□□□□ -0.34
SHKBP1-204ENST00000594862 AGRNO00468 2067 aa12.89□□□□□ -0.35
SHKBP1-204ENST00000594862 AGPAT2O15120 278 aa12.89□□□□□ -0.35
SHKBP1-204ENST00000594862 SULT1A1P50225 295 aa12.89□□□□□ -0.35
SHKBP1-204ENST00000594862 PHLDA1Q8WV24 401 aaPredicted RBP12.89□□□□□ -0.35
SHKBP1-204ENST00000594862 ARL6Q9H0F7 186 aa12.89□□□□□ -0.35
SHKBP1-204ENST00000594862 BIRC6Q9NR09 4857 aa12.89□□□□□ -0.35
SHKBP1-204ENST00000594862 ELOA3CA0A087WX78 387 aaPredicted RBP12.88□□□□□ -0.35
SHKBP1-204ENST00000594862 IGHV4-28A0A0C4DH34 117 aa12.88□□□□□ -0.35
SHKBP1-204ENST00000594862 S100A11P31949 105 aa12.88□□□□□ -0.35
SHKBP1-204ENST00000594862 ARL16Q0P5N6 197 aa12.88□□□□□ -0.35
SHKBP1-204ENST00000594862 IL15RAQ13261 267 aa12.88□□□□□ -0.35
SHKBP1-204ENST00000594862 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.88□□□□□ -0.35
SHKBP1-204ENST00000594862 ARV1Q9H2C2 271 aa12.88□□□□□ -0.35
SHKBP1-204ENST00000594862 C11orf1Q9H5F2 150 aa12.88□□□□□ -0.35
SHKBP1-204ENST00000594862 UQCC1Q9NVA1 299 aa12.88□□□□□ -0.35
SHKBP1-204ENST00000594862 CLEC5AQ9NY25 188 aa12.88□□□□□ -0.35
SHKBP1-204ENST00000594862 X6R8D5 127 aa12.88□□□□□ -0.35
SHKBP1-204ENST00000594862 A0A087X0K7 114 aa12.87□□□□□ -0.35
SHKBP1-204ENST00000594862 A0A0J9YX75 114 aa12.87□□□□□ -0.35
SHKBP1-204ENST00000594862 C11orf94C9JXX5 98 aa12.87□□□□□ -0.35
SHKBP1-204ENST00000594862 COX7A2P2O60397 106 aa12.87□□□□□ -0.35
SHKBP1-204ENST00000594862 DUSP14O95147 198 aaKnown RBP12.87□□□□□ -0.35
SHKBP1-204ENST00000594862 CYCSP99999 105 aaKnown RBP12.87□□□□□ -0.35
SHKBP1-204ENST00000594862 OR4B1Q8NGF8 309 aa12.87□□□□□ -0.35
SHKBP1-204ENST00000594862 XCL2Q9UBD3 114 aa12.87□□□□□ -0.35
SHKBP1-204ENST00000594862 SMIM9A6NGZ8 99 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 INMT-MINDY4F8WBC2 141 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 CST7O76096 145 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 AMBPP02760 352 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 RLN2P04090 185 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 CXCL2P19875 107 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 CAMLGP49069 296 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 TCTAP57738 103 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 PSG9Q00887 426 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 RAB32Q13637 225 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 ATP6V1FQ16864 119 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 VWC2Q2TAL6 325 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 GDF5OSQ5U4N7 250 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 Q6ZRG5 221 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 NRARPQ7Z6K4 114 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 UHRF2Q96PU4 802 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 NEU1Q99519 415 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 MGST2Q99735 147 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 WDR83OSQ9Y284 106 aa12.86□□□□□ -0.35
SHKBP1-204ENST00000594862 TMEM189A5PLL7 270 aa12.85□□□□□ -0.35
SHKBP1-204ENST00000594862 FAM24AA6NFZ4 105 aa12.85□□□□□ -0.35
SHKBP1-204ENST00000594862 DEFB4AO15263 64 aa12.85□□□□□ -0.35
SHKBP1-204ENST00000594862 NANOS2P60321 138 aaKnown RBP12.85□□□□□ -0.35
SHKBP1-204ENST00000594862 FGL1Q08830 312 aa12.85□□□□□ -0.35
SHKBP1-204ENST00000594862 FAM78BQ5VT40 261 aa12.85□□□□□ -0.35
SHKBP1-204ENST00000594862 ZNF705AQ6ZN79 300 aaPredicted RBP12.85□□□□□ -0.35
SHKBP1-204ENST00000594862 LINC00305Q7Z4B0 112 aa12.85□□□□□ -0.35
SHKBP1-204ENST00000594862 TMEM252Q8N6L7 170 aa12.85□□□□□ -0.35
SHKBP1-204ENST00000594862 OR1L4Q8NGR5 311 aa12.85□□□□□ -0.35
SHKBP1-204ENST00000594862 LINC00476Q8WZB0 136 aa12.85□□□□□ -0.35
SHKBP1-204ENST00000594862 PFDN5Q99471 154 aa12.85□□□□□ -0.35
SHKBP1-204ENST00000594862 MARVELD1Q9BSK0 173 aa12.85□□□□□ -0.35
SHKBP1-204ENST00000594862 NMES1Q9C002 83 aa12.85□□□□□ -0.35
SHKBP1-204ENST00000594862 GOLT1BQ9Y3E0 138 aa12.85□□□□□ -0.35
SHKBP1-204ENST00000594862 A8MTW9 85 aa12.84□□□□□ -0.35
SHKBP1-204ENST00000594862 MPDU1O75352 247 aa12.84□□□□□ -0.35
SHKBP1-204ENST00000594862 IGKV3-20P01619 116 aa12.84□□□□□ -0.35
SHKBP1-204ENST00000594862 IFITM3Q01628 133 aa12.84□□□□□ -0.35
SHKBP1-204ENST00000594862 C10orf113Q5VZT2 155 aa12.84□□□□□ -0.35
SHKBP1-204ENST00000594862 LCN15Q6UWW0 184 aa12.84□□□□□ -0.35
SHKBP1-204ENST00000594862 BPIFA4PQ86YQ2 179 aa12.84□□□□□ -0.35
SHKBP1-204ENST00000594862 LRRC20Q8TCA0 184 aa12.84□□□□□ -0.35
SHKBP1-204ENST00000594862 SLC50A1Q9BRV3 221 aa12.84□□□□□ -0.35
SHKBP1-204ENST00000594862 SLC25A31Q9H0C2 315 aa12.84□□□□□ -0.35
SHKBP1-204ENST00000594862 TEX48A0A1B0GUV7 120 aa12.83□□□□□ -0.36
SHKBP1-204ENST00000594862 ZNF705FA8MVS1 300 aaPredicted RBP12.83□□□□□ -0.36
SHKBP1-204ENST00000594862 E5RGE8 158 aa12.83□□□□□ -0.36
SHKBP1-204ENST00000594862 ZNF705DP0CH99 300 aaPredicted RBP12.83□□□□□ -0.36
SHKBP1-204ENST00000594862 ZNF705BP0CI00 300 aaPredicted RBP12.83□□□□□ -0.36
SHKBP1-204ENST00000594862 RBMY1A1P0DJD3 496 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-204ENST00000594862 RBMY1CP0DJD4 496 aa12.83□□□□□ -0.36
SHKBP1-204ENST00000594862 BAXQ07812 192 aa12.83□□□□□ -0.36
SHKBP1-204ENST00000594862 RBMY1FQ15415 496 aaKnown RBP12.83□□□□□ -0.36
SHKBP1-204ENST00000594862 PATE2Q6UY27 113 aa12.83□□□□□ -0.36
SHKBP1-204ENST00000594862 ZNF709Q8N972 641 aa12.83□□□□□ -0.36
SHKBP1-204ENST00000594862 ZNF738Q8NE65 137 aa12.83□□□□□ -0.36
SHKBP1-204ENST00000594862 C2CD4CQ8TF44 421 aa12.83□□□□□ -0.36
SHKBP1-204ENST00000594862 CHAC2Q8WUX2 184 aa12.83□□□□□ -0.36
SHKBP1-204ENST00000594862 C20orf173Q96LM9 149 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms