RNA–Protein interactions for RNA: ENST00000586435.1

LIG3-209, Transcript of DNA ligase 3, humanhuman

TSL 5

Gene LIG3, Length 588 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-209ENST00000586435 CNN1P51911 297 aaKnown RBP8.36□□□□□ -1.07
LIG3-209ENST00000586435 SLC25A22Q9H936 323 aa8.36□□□□□ -1.07
LIG3-209ENST00000586435 TRAV8-2A0A0B4J237 113 aa8.35□□□□□ -1.07
LIG3-209ENST00000586435 SYNGR2O43760 224 aa8.35□□□□□ -1.07
LIG3-209ENST00000586435 SPINK13Q1W4C9 94 aa8.35□□□□□ -1.07
LIG3-209ENST00000586435 ATG101Q9BSB4 218 aa8.35□□□□□ -1.07
LIG3-209ENST00000586435 TMEM147Q9BVK8 224 aa8.35□□□□□ -1.07
LIG3-209ENST00000586435 PAIP2BQ9ULR5 123 aaKnown RBP8.35□□□□□ -1.07
LIG3-209ENST00000586435 ABCA13Q86UQ4 5058 aa8.35□□□□□ -1.07
LIG3-209ENST00000586435 NBDYA0A0U1RRE5 68 aa8.34□□□□□ -1.07
LIG3-209ENST00000586435 PLAC8L1A1L4L8 177 aa8.34□□□□□ -1.07
LIG3-209ENST00000586435 ZNF705GA8MUZ8 300 aaPredicted RBP8.34□□□□□ -1.07
LIG3-209ENST00000586435 H3BRN7 92 aa8.34□□□□□ -1.07
LIG3-209ENST00000586435 M0R2Z0 102 aa8.34□□□□□ -1.07
LIG3-209ENST00000586435 ORM2P19652 201 aa8.34□□□□□ -1.07
LIG3-209ENST00000586435 TMBIM6P55061 237 aa8.34□□□□□ -1.07
LIG3-209ENST00000586435 AKR1C1Q04828 323 aa8.34□□□□□ -1.07
LIG3-209ENST00000586435 TMEM182Q6ZP80 229 aaPredicted RBP8.34□□□□□ -1.07
LIG3-209ENST00000586435 TMEM144Q7Z5S9 345 aa8.34□□□□□ -1.07
LIG3-209ENST00000586435 TMED4Q7Z7H5 227 aa8.34□□□□□ -1.07
LIG3-209ENST00000586435 ZNRF2Q8NHG8 242 aa8.34□□□□□ -1.07
LIG3-209ENST00000586435 DEDD2Q8WXF8 326 aa8.34□□□□□ -1.07
LIG3-209ENST00000586435 TRIM63Q969Q1 353 aa8.34□□□□□ -1.07
LIG3-209ENST00000586435 KRTAP4-5Q9BYR2 181 aa8.34□□□□□ -1.07
LIG3-209ENST00000586435 SLIRPQ9GZT3 109 aaKnown RBP8.34□□□□□ -1.07
LIG3-209ENST00000586435 FABP12A6NFH5 140 aa8.33□□□□□ -1.08
LIG3-209ENST00000586435 BOLA2-SMG1P6H3BVE0 249 aa8.33□□□□□ -1.08
LIG3-209ENST00000586435 WRBO00258 174 aa8.33□□□□□ -1.08
LIG3-209ENST00000586435 CDK2AP2O75956 126 aa8.33□□□□□ -1.08
LIG3-209ENST00000586435 RPL7P18124 248 aaKnown RBP8.33□□□□□ -1.08
LIG3-209ENST00000586435 VAMP1P23763 118 aa8.33□□□□□ -1.08
LIG3-209ENST00000586435 GATA2P23769 480 aaPredicted RBP8.33□□□□□ -1.08
LIG3-209ENST00000586435 TNFSF8P32971 234 aa8.33□□□□□ -1.08
LIG3-209ENST00000586435 AP3S2P59780 193 aa8.33□□□□□ -1.08
LIG3-209ENST00000586435 PLP1P60201 277 aa8.33□□□□□ -1.08
LIG3-209ENST00000586435 ACOT7LQ6ZUV0 252 aa8.33□□□□□ -1.08
LIG3-209ENST00000586435 BAP18Q8IXM2 172 aa8.33□□□□□ -1.08
LIG3-209ENST00000586435 TMEM256Q8N2U0 113 aa8.33□□□□□ -1.08
LIG3-209ENST00000586435 C6orf223Q8N319 242 aa8.33□□□□□ -1.08
LIG3-209ENST00000586435 SLC25A21Q9BQT8 299 aaPredicted RBP8.33□□□□□ -1.08
LIG3-209ENST00000586435 SHANK2-AS3Q9BTD1 123 aa8.33□□□□□ -1.08
LIG3-209ENST00000586435 SLC25A39Q9BZJ4 359 aaPredicted RBP8.33□□□□□ -1.08
LIG3-209ENST00000586435 HSPG2P98160 4391 aa8.32□□□□□ -1.08
LIG3-209ENST00000586435 A0A087X0K7 114 aa8.32□□□□□ -1.08
LIG3-209ENST00000586435 SFT2D2O95562 160 aa8.32□□□□□ -1.08
LIG3-209ENST00000586435 PRM2P04554 102 aa8.32□□□□□ -1.08
LIG3-209ENST00000586435 ATP5G1P05496 136 aa8.32□□□□□ -1.08
LIG3-209ENST00000586435 DEFB130BP0DP73 79 aa8.32□□□□□ -1.08
LIG3-209ENST00000586435 DEFB130AP0DP74 79 aa8.32□□□□□ -1.08
LIG3-209ENST00000586435 ATP5G3P48201 142 aa8.32□□□□□ -1.08
LIG3-209ENST00000586435 TNP2Q05952 138 aa8.32□□□□□ -1.08
LIG3-209ENST00000586435 SPANXN5Q5MJ07 72 aa8.32□□□□□ -1.08
LIG3-209ENST00000586435 IGFL4Q6B9Z1 124 aa8.32□□□□□ -1.08
LIG3-209ENST00000586435 TOMM5Q8N4H5 51 aa8.32□□□□□ -1.08
LIG3-209ENST00000586435 RNF182Q8N6D2 247 aa8.32□□□□□ -1.08
LIG3-209ENST00000586435 ZNF738Q8NE65 137 aa8.32□□□□□ -1.08
LIG3-209ENST00000586435 STRAPQ9Y3F4 350 aaKnown RBP8.32□□□□□ -1.08
LIG3-209ENST00000586435 CBY3A6NI87 242 aa8.31□□□□□ -1.08
LIG3-209ENST00000586435 C16orf90A8MZG2 172 aa8.31□□□□□ -1.08
LIG3-209ENST00000586435 F5H768 121 aa8.31□□□□□ -1.08
LIG3-209ENST00000586435 H3BP45 60 aa8.31□□□□□ -1.08
LIG3-209ENST00000586435 CXCL3P19876 107 aa8.31□□□□□ -1.08
LIG3-209ENST00000586435 AZU1P20160 251 aa8.31□□□□□ -1.08
LIG3-209ENST00000586435 CCL18P55774 89 aa8.31□□□□□ -1.08
LIG3-209ENST00000586435 TAS2R60P59551 318 aa8.31□□□□□ -1.08
LIG3-209ENST00000586435 RAP2BP61225 183 aa8.31□□□□□ -1.08
LIG3-209ENST00000586435 SELENOTP62341 195 aa8.31□□□□□ -1.08
LIG3-209ENST00000586435 FGL1Q08830 312 aa8.31□□□□□ -1.08
LIG3-209ENST00000586435 PPP1R1AQ13522 171 aa8.31□□□□□ -1.08
LIG3-209ENST00000586435 CYP2G1PQ6ZSU1 146 aa8.31□□□□□ -1.08
LIG3-209ENST00000586435 OR8A1Q8NGG7 326 aa8.31□□□□□ -1.08
LIG3-209ENST00000586435 C16orf74Q96GX8 76 aa8.31□□□□□ -1.08
LIG3-209ENST00000586435 HIGD1AQ9Y241 93 aa8.31□□□□□ -1.08
LIG3-209ENST00000586435 TRAV12-2A0A075B6T6 113 aa8.3□□□□□ -1.08
LIG3-209ENST00000586435 H3BMQ9 156 aa8.3□□□□□ -1.08
LIG3-209ENST00000586435 NUDT3O95989 172 aa8.3□□□□□ -1.08
LIG3-209ENST00000586435 IL5P05113 134 aa8.3□□□□□ -1.08
LIG3-209ENST00000586435 HOXB5P09067 269 aa8.3□□□□□ -1.08
LIG3-209ENST00000586435 LINC00869P0C866 280 aa8.3□□□□□ -1.08
LIG3-209ENST00000586435 UBE2MP61081 183 aaKnown RBP8.3□□□□□ -1.08
LIG3-209ENST00000586435 ID3Q02535 119 aa8.3□□□□□ -1.08
LIG3-209ENST00000586435 HIST1H1AQ02539 215 aaPredicted RBP8.3□□□□□ -1.08
LIG3-209ENST00000586435 ZNF493Q6ZR52 646 aa8.3□□□□□ -1.08
LIG3-209ENST00000586435 S100A7AQ86SG5 101 aa8.3□□□□□ -1.08
LIG3-209ENST00000586435 MCFD2Q8NI22 146 aa8.3□□□□□ -1.08
LIG3-209ENST00000586435 RNF24Q9Y225 148 aa8.3□□□□□ -1.08
LIG3-209ENST00000586435 LINC00588Q9Y4M8 146 aa8.3□□□□□ -1.08
LIG3-209ENST00000586435 V9GYH0 126 aa8.3□□□□□ -1.08
LIG3-209ENST00000586435 PMS2P5A8MQ11 134 aa8.29□□□□□ -1.08
LIG3-209ENST00000586435 FNDC10F2Z333 226 aa8.29□□□□□ -1.08
LIG3-209ENST00000586435 K7EPK0 472 aa8.29□□□□□ -1.08
LIG3-209ENST00000586435 NOL3O60936 208 aaKnown RBP8.29□□□□□ -1.08
LIG3-209ENST00000586435 HYPMO75409 117 aa8.29□□□□□ -1.08
LIG3-209ENST00000586435 CXCL2P19875 107 aa8.29□□□□□ -1.08
LIG3-209ENST00000586435 CDKN1BP46527 198 aa8.29□□□□□ -1.08
LIG3-209ENST00000586435 DLK1P80370 383 aa8.29□□□□□ -1.08
LIG3-209ENST00000586435 FCN2Q15485 313 aa8.29□□□□□ -1.08
LIG3-209ENST00000586435 PSG3Q16557 428 aa8.29□□□□□ -1.08
LIG3-209ENST00000586435 RNASE8Q8TDE3 154 aaKnown RBP8.29□□□□□ -1.08
LIG3-209ENST00000586435 TMEM263Q8WUH6 116 aaKnown RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 41.7 ms