RNA–Protein interactions for RNA: ENST00000584908.5

ERBB2-222, Transcript of erb-b2 receptor tyrosine kinase 2, human

TSL 1 (best)

Gene ERBB2, Length 1,316 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ERBB2-222	ENST00000584908	SLC25A22	Q9H936	323 aa		11.92	□□□□□ -0.5
ERBB2-222	ENST00000584908	DOK5	Q9P104	306 aa		11.92	□□□□□ -0.5
ERBB2-222	ENST00000584908	RNF24	Q9Y225	148 aa		11.92	□□□□□ -0.5
ERBB2-222	ENST00000584908	KNCN	A6PVL3	124 aa		11.91	□□□□□ -0.5
ERBB2-222	ENST00000584908	OR5G3	P0C626	314 aa		11.91	□□□□□ -0.5
ERBB2-222	ENST00000584908	PET100	P0DJ07	73 aa		11.91	□□□□□ -0.5
ERBB2-222	ENST00000584908	ID1	P41134	155 aa		11.91	□□□□□ -0.5
ERBB2-222	ENST00000584908	EWSR1	Q01844	656 aa	Known RBP eCLIP	11.91	□□□□□ -0.5
ERBB2-222	ENST00000584908	NHLH2	Q02577	135 aa		11.91	□□□□□ -0.5
ERBB2-222	ENST00000584908	BAX	Q07812	192 aa		11.91	□□□□□ -0.5
ERBB2-222	ENST00000584908	GATAD1	Q8WUU5	269 aa		11.91	□□□□□ -0.5
ERBB2-222	ENST00000584908	UHRF2	Q96PU4	802 aa		11.91	□□□□□ -0.5
ERBB2-222	ENST00000584908	ARV1	Q9H2C2	271 aa		11.91	□□□□□ -0.5
ERBB2-222	ENST00000584908	TENM2	Q9NT68	2774 aa		11.91	□□□□□ -0.5
ERBB2-222	ENST00000584908	ELOA3C	A0A087WX78	387 aa	Predicted RBP	11.9	□□□□□ -0.5
ERBB2-222	ENST00000584908	MPDU1	O75352	247 aa		11.9	□□□□□ -0.5
ERBB2-222	ENST00000584908	GIG44	P09565	113 aa	Predicted RBP	11.9	□□□□□ -0.5
ERBB2-222	ENST00000584908	SPP1	P10451	314 aa		11.9	□□□□□ -0.5
ERBB2-222	ENST00000584908	RPL7	P18124	248 aa	Known RBP	11.9	□□□□□ -0.5
ERBB2-222	ENST00000584908	RPL29	P47914	159 aa	Known RBP	11.9	□□□□□ -0.5
ERBB2-222	ENST00000584908	OPCML	Q14982	345 aa		11.9	□□□□□ -0.5
ERBB2-222	ENST00000584908	TMEM41B	Q5BJD5	291 aa		11.9	□□□□□ -0.5
ERBB2-222	ENST00000584908	MORN3	Q6PF18	240 aa	Predicted RBP	11.9	□□□□□ -0.5
ERBB2-222	ENST00000584908	UNQ5830/PRO19650/PRO19816	Q6UY13	95 aa		11.9	□□□□□ -0.5
ERBB2-222	ENST00000584908	TMEM37	Q8WXS4	190 aa		11.9	□□□□□ -0.5
ERBB2-222	ENST00000584908		A0A087X0K7	114 aa		11.89	□□□□□ -0.51
ERBB2-222	ENST00000584908	UBE2L5P	A0A1B0GUS4	154 aa		11.89	□□□□□ -0.51
ERBB2-222	ENST00000584908		H3BMM0	161 aa		11.89	□□□□□ -0.51
ERBB2-222	ENST00000584908	HLA-DRB4	P13762	266 aa		11.89	□□□□□ -0.51
ERBB2-222	ENST00000584908	CXCL3	P19876	107 aa		11.89	□□□□□ -0.51
ERBB2-222	ENST00000584908	ACTL10	Q5JWF8	245 aa		11.89	□□□□□ -0.51
ERBB2-222	ENST00000584908	OR5C1	Q8NGR4	320 aa		11.89	□□□□□ -0.51
ERBB2-222	ENST00000584908	RSG1	Q9BU20	258 aa		11.89	□□□□□ -0.51
ERBB2-222	ENST00000584908	HLA-DRB4	X5D2U9	266 aa		11.89	□□□□□ -0.51
ERBB2-222	ENST00000584908	MRPS12	O15235	138 aa	Known RBP	11.88	□□□□□ -0.51
ERBB2-222	ENST00000584908	CA1	P00915	261 aa	Predicted RBP	11.88	□□□□□ -0.51
ERBB2-222	ENST00000584908	LYL1	P12980	280 aa		11.88	□□□□□ -0.51
ERBB2-222	ENST00000584908	MIC13	Q5XKP0	118 aa		11.88	□□□□□ -0.51
ERBB2-222	ENST00000584908		Q6ZRG5	221 aa		11.88	□□□□□ -0.51
ERBB2-222	ENST00000584908	LINC00305	Q7Z4B0	112 aa		11.88	□□□□□ -0.51
ERBB2-222	ENST00000584908	CLUHP3	Q96NS8	147 aa		11.88	□□□□□ -0.51
ERBB2-222	ENST00000584908	COX7A2P2	O60397	106 aa		11.87	□□□□□ -0.51
ERBB2-222	ENST00000584908	FGF7	P21781	194 aa		11.87	□□□□□ -0.51
ERBB2-222	ENST00000584908	RGS21	Q2M5E4	152 aa		11.87	□□□□□ -0.51
ERBB2-222	ENST00000584908	CASC10	Q5T4H9	136 aa		11.87	□□□□□ -0.51
ERBB2-222	ENST00000584908	SPATA31B1P	Q5VZV4	182 aa		11.87	□□□□□ -0.51
ERBB2-222	ENST00000584908	FOXI2	Q6ZQN5	318 aa		11.87	□□□□□ -0.51
ERBB2-222	ENST00000584908	NPCDR1	Q9BY65	106 aa		11.87	□□□□□ -0.51
ERBB2-222	ENST00000584908	SAV1	Q9H4B6	383 aa	Predicted RBP	11.87	□□□□□ -0.51
ERBB2-222	ENST00000584908	DNAJC4	Q9NNZ3	241 aa		11.87	□□□□□ -0.51
ERBB2-222	ENST00000584908	SLC39A9	Q9NUM3	307 aa		11.87	□□□□□ -0.51
ERBB2-222	ENST00000584908	KMT2C	Q8NEZ4	4911 aa	Known RBP	11.87	□□□□□ -0.51
ERBB2-222	ENST00000584908	ATF4	P18848	351 aa	Predicted RBP	11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	B2M	P61769	119 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	OXA1L	Q15070	435 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	C10orf113	Q5VZT2	155 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	OR11H7	Q8NGC8	314 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	OR1L4	Q8NGR5	311 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	C16orf92	Q96LL3	132 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	PFDN5	Q99471	154 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	MED28	Q9H204	178 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	MBD2	Q9UBB5	411 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	HSPB11	Q9Y547	144 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	TRAV8-2	A0A0B4J237	113 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	C4BPB	P20851	252 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	FCN2	Q15485	313 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	GDF5OS	Q5U4N7	250 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	MORN5	Q5VZ52	161 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	CSNK1G2-AS1	Q8NCQ2	148 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	IL17D	Q8TAD2	202 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	ASB13	Q8WXK3	278 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	C20orf173	Q96LM9	149 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	LINC00052	Q96N35	136 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	RPRM	Q9NS64	109 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	PXMP4	Q9Y6I8	212 aa		11.86	□□□□□ -0.51
ERBB2-222	ENST00000584908	STARD9	Q9P2P6	4700 aa		11.85	□□□□□ -0.51
ERBB2-222	ENST00000584908		A0A0J9YX75	114 aa		11.85	□□□□□ -0.51
ERBB2-222	ENST00000584908		A8MTW9	85 aa		11.85	□□□□□ -0.51
ERBB2-222	ENST00000584908	CXCL2	P19875	107 aa		11.85	□□□□□ -0.51
ERBB2-222	ENST00000584908	RPL12	P30050	165 aa	Known RBP	11.85	□□□□□ -0.51
ERBB2-222	ENST00000584908	NUTF2	P61970	127 aa	Known RBP	11.85	□□□□□ -0.51
ERBB2-222	ENST00000584908	CLINT1	Q14677	625 aa		11.85	□□□□□ -0.51
ERBB2-222	ENST00000584908	BPIFA4P	Q86YQ2	179 aa		11.85	□□□□□ -0.51
ERBB2-222	ENST00000584908	ATP5S	Q99766	215 aa		11.85	□□□□□ -0.51
ERBB2-222	ENST00000584908	RARRES2	Q99969	163 aa		11.85	□□□□□ -0.51
ERBB2-222	ENST00000584908	WDR61	Q9GZS3	305 aa	Known RBP	11.85	□□□□□ -0.51
ERBB2-222	ENST00000584908	DEFB1	P60022	68 aa		11.84	□□□□□ -0.51
ERBB2-222	ENST00000584908	OR11H2	Q8NH07	326 aa		11.84	□□□□□ -0.51
ERBB2-222	ENST00000584908	THAP6	Q8TBB0	222 aa		11.84	□□□□□ -0.51
ERBB2-222	ENST00000584908	C1QTNF4	Q9BXJ3	329 aa		11.84	□□□□□ -0.51
ERBB2-222	ENST00000584908		A0A0J9YWU9	116 aa		11.83	□□□□□ -0.52
ERBB2-222	ENST00000584908	ZNF705E	A8MWA4	302 aa	Predicted RBP	11.83	□□□□□ -0.52
ERBB2-222	ENST00000584908	IGLC2	P0DOY2	106 aa		11.83	□□□□□ -0.52
ERBB2-222	ENST00000584908	LCN15	Q6UWW0	184 aa		11.83	□□□□□ -0.52
ERBB2-222	ENST00000584908	PARD6G	Q9BYG4	376 aa	Predicted RBP	11.83	□□□□□ -0.52
ERBB2-222	ENST00000584908	C11orf68	Q9H3H3	251 aa	Known RBP	11.83	□□□□□ -0.52
ERBB2-222	ENST00000584908	KCNIP2	Q9NS61	270 aa		11.83	□□□□□ -0.52
ERBB2-222	ENST00000584908	GIP	P09681	153 aa	Predicted RBP	11.82	□□□□□ -0.52
ERBB2-222	ENST00000584908	FGL1	Q08830	312 aa		11.82	□□□□□ -0.52
ERBB2-222	ENST00000584908	EBLN2	Q6P2I7	272 aa		11.82	□□□□□ -0.52

Retrieved 100 of 20,778 RNA–protein pairs in 38 ms