RNA–Protein interactions for RNA: ENST00000578595.1

SS18-209, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 3

Gene SS18, Length 406 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-209ENST00000578595 RPL7P18124 248 aaKnown RBP14.31□□□□□ -0.12
SS18-209ENST00000578595 EWSR1Q01844 656 aaKnown RBP eCLIP14.31□□□□□ -0.12
SS18-209ENST00000578595 SAMD13Q5VXD3 122 aa14.31□□□□□ -0.12
SS18-209ENST00000578595 MIC13Q5XKP0 118 aa14.31□□□□□ -0.12
SS18-209ENST00000578595 SEPSECSQ9HD40 501 aaKnown RBP14.31□□□□□ -0.12
SS18-209ENST00000578595 A0A0J9YWU9 116 aa14.3□□□□□ -0.12
SS18-209ENST00000578595 ISLRO14498 428 aa14.3□□□□□ -0.12
SS18-209ENST00000578595 SPP1P10451 314 aa14.3□□□□□ -0.12
SS18-209ENST00000578595 DEFB1P60022 68 aa14.3□□□□□ -0.12
SS18-209ENST00000578595 PLP1P60201 277 aa14.3□□□□□ -0.12
SS18-209ENST00000578595 CLINT1Q14677 625 aa14.3□□□□□ -0.12
SS18-209ENST00000578595 ATP6V1FQ16864 119 aa14.3□□□□□ -0.12
SS18-209ENST00000578595 PXDC1Q5TGL8 231 aa14.3□□□□□ -0.12
SS18-209ENST00000578595 MORN3Q6PF18 240 aaPredicted RBP14.3□□□□□ -0.12
SS18-209ENST00000578595 Q6ZRG5 221 aa14.3□□□□□ -0.12
SS18-209ENST00000578595 OR5C1Q8NGR4 320 aa14.3□□□□□ -0.12
SS18-209ENST00000578595 LRRC20Q8TCA0 184 aa14.3□□□□□ -0.12
SS18-209ENST00000578595 RARRES2Q99969 163 aa14.3□□□□□ -0.12
SS18-209ENST00000578595 RNF24Q9Y225 148 aa14.3□□□□□ -0.12
SS18-209ENST00000578595 WDR83OSQ9Y284 106 aa14.3□□□□□ -0.12
SS18-209ENST00000578595 NHLH2Q02577 135 aa14.29□□□□□ -0.12
SS18-209ENST00000578595 CASC10Q5T4H9 136 aa14.29□□□□□ -0.12
SS18-209ENST00000578595 C10orf113Q5VZT2 155 aa14.29□□□□□ -0.12
SS18-209ENST00000578595 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa14.29□□□□□ -0.12
SS18-209ENST00000578595 LINC00305Q7Z4B0 112 aa14.29□□□□□ -0.12
SS18-209ENST00000578595 OR11H2Q8NH07 326 aa14.29□□□□□ -0.12
SS18-209ENST00000578595 GATAD1Q8WUU5 269 aa14.29□□□□□ -0.12
SS18-209ENST00000578595 H0YIZ8 118 aa14.28□□□□□ -0.12
SS18-209ENST00000578595 SOCS3O14543 225 aa14.28□□□□□ -0.12
SS18-209ENST00000578595 C4BPBP20851 252 aa14.28□□□□□ -0.12
SS18-209ENST00000578595 NUTF2P61970 127 aaKnown RBP14.28□□□□□ -0.12
SS18-209ENST00000578595 EBLN2Q6P2I7 272 aa14.28□□□□□ -0.12
SS18-209ENST00000578595 PATE2Q6UY27 113 aa14.28□□□□□ -0.12
SS18-209ENST00000578595 OR4B1Q8NGF8 309 aa14.28□□□□□ -0.12
SS18-209ENST00000578595 IL17DQ8TAD2 202 aa14.28□□□□□ -0.12
SS18-209ENST00000578595 THAP6Q8TBB0 222 aa14.28□□□□□ -0.12
SS18-209ENST00000578595 MED28Q9H204 178 aa14.28□□□□□ -0.12
SS18-209ENST00000578595 RPRMQ9NS64 109 aa14.28□□□□□ -0.12
SS18-209ENST00000578595 CLEC5AQ9NY25 188 aa14.28□□□□□ -0.12
SS18-209ENST00000578595 MPC2O95563 127 aa14.27□□□□□ -0.13
SS18-209ENST00000578595 HLA-DRB4P13762 266 aa14.27□□□□□ -0.13
SS18-209ENST00000578595 B2MP61769 119 aa14.27□□□□□ -0.13
SS18-209ENST00000578595 VWC2Q2TAL6 325 aa14.27□□□□□ -0.13
SS18-209ENST00000578595 TMEM41BQ5BJD5 291 aa14.27□□□□□ -0.13
SS18-209ENST00000578595 GDF5OSQ5U4N7 250 aa14.27□□□□□ -0.13
SS18-209ENST00000578595 OR1L4Q8NGR5 311 aa14.27□□□□□ -0.13
SS18-209ENST00000578595 MBD2Q9UBB5 411 aa14.27□□□□□ -0.13
SS18-209ENST00000578595 HLA-DRB4X5D2U9 266 aa14.27□□□□□ -0.13
SS18-209ENST00000578595 ELOA3CA0A087WX78 387 aaPredicted RBP14.26□□□□□ -0.13
SS18-209ENST00000578595 F6UB75 175 aa14.26□□□□□ -0.13
SS18-209ENST00000578595 H3BMM0 161 aa14.26□□□□□ -0.13
SS18-209ENST00000578595 PMS2P11Q13670 270 aa14.26□□□□□ -0.13
SS18-209ENST00000578595 OPCMLQ14982 345 aa14.26□□□□□ -0.13
SS18-209ENST00000578595 IGFL4Q6B9Z1 124 aa14.26□□□□□ -0.13
SS18-209ENST00000578595 FOXI2Q6ZQN5 318 aa14.26□□□□□ -0.13
SS18-209ENST00000578595 PFDN5Q99471 154 aa14.26□□□□□ -0.13
SS18-209ENST00000578595 SAV1Q9H4B6 383 aaPredicted RBP14.26□□□□□ -0.13
SS18-209ENST00000578595 PXMP4Q9Y6I8 212 aa14.26□□□□□ -0.13
SS18-209ENST00000578595 SNRPCP09234 159 aaKnown RBP14.25□□□□□ -0.13
SS18-209ENST00000578595 FXYD7P58549 80 aa14.25□□□□□ -0.13
SS18-209ENST00000578595 RGS21Q2M5E4 152 aa14.25□□□□□ -0.13
SS18-209ENST00000578595 BPIFA4PQ86YQ2 179 aa14.25□□□□□ -0.13
SS18-209ENST00000578595 C20orf173Q96LM9 149 aa14.25□□□□□ -0.13
SS18-209ENST00000578595 SLC39A9Q9NUM3 307 aa14.25□□□□□ -0.13
SS18-209ENST00000578595 XCL2Q9UBD3 114 aa14.25□□□□□ -0.13
SS18-209ENST00000578595 MPDU1O75352 247 aa14.24□□□□□ -0.13
SS18-209ENST00000578595 RPL29P47914 159 aaKnown RBP14.24□□□□□ -0.13
SS18-209ENST00000578595 RNF182Q8N6D2 247 aa14.24□□□□□ -0.13
SS18-209ENST00000578595 ZNF709Q8N972 641 aa14.24□□□□□ -0.13
SS18-209ENST00000578595 ZNF738Q8NE65 137 aa14.24□□□□□ -0.13
SS18-209ENST00000578595 TMEM37Q8WXS4 190 aa14.24□□□□□ -0.13
SS18-209ENST00000578595 C1QTNF4Q9BXJ3 329 aa14.24□□□□□ -0.13
SS18-209ENST00000578595 NPCDR1Q9BY65 106 aa14.24□□□□□ -0.13
SS18-209ENST00000578595 SMIM3Q9BZL3 60 aa14.24□□□□□ -0.13
SS18-209ENST00000578595 DNAJC4Q9NNZ3 241 aa14.24□□□□□ -0.13
SS18-209ENST00000578595 DNAH7Q8WXX0 4024 aa14.24□□□□□ -0.13
SS18-209ENST00000578595 CXorf65A6NEN9 183 aa14.23□□□□□ -0.13
SS18-209ENST00000578595 CXCL3P19876 107 aa14.23□□□□□ -0.13
SS18-209ENST00000578595 PRR20EP86478 221 aa14.23□□□□□ -0.13
SS18-209ENST00000578595 PRR20CP86479 221 aa14.23□□□□□ -0.13
SS18-209ENST00000578595 PRR20DP86480 221 aa14.23□□□□□ -0.13
SS18-209ENST00000578595 PRR20BP86481 221 aa14.23□□□□□ -0.13
SS18-209ENST00000578595 PRR20AP86496 221 aa14.23□□□□□ -0.13
SS18-209ENST00000578595 FCN2Q15485 313 aa14.23□□□□□ -0.13
SS18-209ENST00000578595 H3BTX0 84 aa14.22□□□□□ -0.13
SS18-209ENST00000578595 DEFB4AO15263 64 aa14.22□□□□□ -0.13
SS18-209ENST00000578595 RPL12P30050 165 aaKnown RBP14.22□□□□□ -0.13
SS18-209ENST00000578595 FAM78BQ5VT40 261 aa14.22□□□□□ -0.13
SS18-209ENST00000578595 MORN5Q5VZ52 161 aa14.22□□□□□ -0.13
SS18-209ENST00000578595 ATP5SQ99766 215 aa14.22□□□□□ -0.13
SS18-209ENST00000578595 RNF126Q9BV68 326 aa14.22□□□□□ -0.13
SS18-209ENST00000578595 KCNIP2Q9NS61 270 aa14.22□□□□□ -0.13
SS18-209ENST00000578595 HSPB11Q9Y547 144 aa14.22□□□□□ -0.13
SS18-209ENST00000578595 A0A087X0K7 114 aa14.21□□□□□ -0.13
SS18-209ENST00000578595 GIG44P09565 113 aaPredicted RBP14.21□□□□□ -0.13
SS18-209ENST00000578595 SPATA31B1PQ5VZV4 182 aa14.21□□□□□ -0.13
SS18-209ENST00000578595 LCN15Q6UWW0 184 aa14.21□□□□□ -0.13
SS18-209ENST00000578595 C17orf77Q96MU5 243 aa14.21□□□□□ -0.13
SS18-209ENST00000578595 TENM2Q9NT68 2774 aa14.21□□□□□ -0.14
SS18-209ENST00000578595 IGHV3OR16-12A0A075B7B8 117 aa14.2□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms