RNA–Protein interactions for RNA: ENST00000572019.1

NUP88-203, Transcript of nucleoporin 88, humanhuman

TSL 2

Gene NUP88, Length 580 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-203ENST00000572019 AP3S1Q92572 193 aa13.29□□□□□ -0.28
NUP88-203ENST00000572019 PAIP2BQ9ULR5 123 aaKnown RBP13.29□□□□□ -0.28
NUP88-203ENST00000572019 DMBT1Q9UGM3 2413 aaPredicted RBP13.28□□□□□ -0.28
NUP88-203ENST00000572019 BOLA2-SMG1P6H3BVE0 249 aa13.28□□□□□ -0.28
NUP88-203ENST00000572019 FABP1P07148 127 aa13.28□□□□□ -0.28
NUP88-203ENST00000572019 AKAIN1P0CW23 69 aa13.28□□□□□ -0.28
NUP88-203ENST00000572019 AKR1C4P17516 323 aa13.28□□□□□ -0.28
NUP88-203ENST00000572019 ORM2P19652 201 aa13.28□□□□□ -0.28
NUP88-203ENST00000572019 SSBP1Q04837 148 aaKnown RBP13.28□□□□□ -0.28
NUP88-203ENST00000572019 FGL1Q08830 312 aa13.28□□□□□ -0.28
NUP88-203ENST00000572019 KIR3DS1Q14943 382 aa13.28□□□□□ -0.28
NUP88-203ENST00000572019 SAMD13Q5VXD3 122 aa13.28□□□□□ -0.28
NUP88-203ENST00000572019 CLVS1Q8IUQ0 354 aaPredicted RBP13.28□□□□□ -0.28
NUP88-203ENST00000572019 LINC01587Q99440 93 aa13.28□□□□□ -0.28
NUP88-203ENST00000572019 DUSP14O95147 198 aaKnown RBP13.27□□□□□ -0.29
NUP88-203ENST00000572019 CLINT1Q14677 625 aa13.27□□□□□ -0.29
NUP88-203ENST00000572019 GPR141Q7Z602 305 aa13.27□□□□□ -0.29
NUP88-203ENST00000572019 NOP10Q9NPE3 64 aaKnown RBP13.27□□□□□ -0.29
NUP88-203ENST00000572019 CACFD1Q9UGQ2 172 aa13.27□□□□□ -0.29
NUP88-203ENST00000572019 A0A0J9YY99 117 aa13.26□□□□□ -0.29
NUP88-203ENST00000572019 HOXA5P20719 270 aa13.26□□□□□ -0.29
NUP88-203ENST00000572019 HIST1H1AQ02539 215 aaPredicted RBP13.26□□□□□ -0.29
NUP88-203ENST00000572019 ESRGQ1W209 222 aa13.26□□□□□ -0.29
NUP88-203ENST00000572019 ZNF738Q8NE65 137 aa13.26□□□□□ -0.29
NUP88-203ENST00000572019 OR1B1Q8NGR6 318 aa13.26□□□□□ -0.29
NUP88-203ENST00000572019 C15orf40Q8WUR7 153 aa13.26□□□□□ -0.29
NUP88-203ENST00000572019 PRRT1Q99946 306 aa13.26□□□□□ -0.29
NUP88-203ENST00000572019 Q9H3A6 140 aa13.26□□□□□ -0.29
NUP88-203ENST00000572019 KCNIP3Q9Y2W7 256 aa13.26□□□□□ -0.29
NUP88-203ENST00000572019 TRAV26-1A0A087WT03 109 aa13.25□□□□□ -0.29
NUP88-203ENST00000572019 RGS5O15539 181 aa13.25□□□□□ -0.29
NUP88-203ENST00000572019 ATP5IP56385 69 aaPredicted RBP13.25□□□□□ -0.29
NUP88-203ENST00000572019 OR4D5Q8NGN0 318 aa13.25□□□□□ -0.29
NUP88-203ENST00000572019 RNASE8Q8TDE3 154 aaKnown RBP13.25□□□□□ -0.29
NUP88-203ENST00000572019 SLC45A2Q9UMX9 530 aa13.25□□□□□ -0.29
NUP88-203ENST00000572019 ANKRD20A5PA0PJZ0 165 aa13.24□□□□□ -0.29
NUP88-203ENST00000572019 H3BRN7 92 aa13.24□□□□□ -0.29
NUP88-203ENST00000572019 TAS2R60P59551 318 aa13.24□□□□□ -0.29
NUP88-203ENST00000572019 OR5I1Q13606 314 aa13.24□□□□□ -0.29
NUP88-203ENST00000572019 GGNBP1Q5YKI7 109 aa13.24□□□□□ -0.29
NUP88-203ENST00000572019 OR8A1Q8NGG7 326 aa13.24□□□□□ -0.29
NUP88-203ENST00000572019 PARD6GQ9BYG4 376 aaPredicted RBP13.24□□□□□ -0.29
NUP88-203ENST00000572019 SMIM18P0DKX4 95 aa13.23□□□□□ -0.29
NUP88-203ENST00000572019 CXCL3P19876 107 aa13.23□□□□□ -0.29
NUP88-203ENST00000572019 B2MP61769 119 aa13.23□□□□□ -0.29
NUP88-203ENST00000572019 RAB11AP62491 216 aa13.23□□□□□ -0.29
NUP88-203ENST00000572019 RHOBP62745 196 aa13.23□□□□□ -0.29
NUP88-203ENST00000572019 MRPS10P82664 201 aaKnown RBP13.23□□□□□ -0.29
NUP88-203ENST00000572019 C16orf74Q96GX8 76 aa13.23□□□□□ -0.29
NUP88-203ENST00000572019 TMEM147Q9BVK8 224 aa13.23□□□□□ -0.29
NUP88-203ENST00000572019 ZNF586Q9NXT0 402 aa13.23□□□□□ -0.29
NUP88-203ENST00000572019 TIMM8BQ9Y5J9 83 aaPredicted RBP13.23□□□□□ -0.29
NUP88-203ENST00000572019 FLG2Q5D862 2391 aaPredicted RBP13.22□□□□□ -0.29
NUP88-203ENST00000572019 EPM2AB3EWF7 344 aa13.22□□□□□ -0.29
NUP88-203ENST00000572019 ZNF701M0R085 212 aaPredicted RBP13.22□□□□□ -0.29
NUP88-203ENST00000572019 BTF3P20290 206 aaKnown RBP13.22□□□□□ -0.29
NUP88-203ENST00000572019 SPCS2Q15005 226 aa13.22□□□□□ -0.29
NUP88-203ENST00000572019 Q6ZRN7 208 aaPredicted RBP13.22□□□□□ -0.29
NUP88-203ENST00000572019 TMEM144Q7Z5S9 345 aa13.22□□□□□ -0.29
NUP88-203ENST00000572019 LINC00612Q8N6U2 182 aa13.22□□□□□ -0.29
NUP88-203ENST00000572019 BPIFCQ8NFQ6 507 aa13.22□□□□□ -0.29
NUP88-203ENST00000572019 GNPNAT1Q96EK6 184 aaPredicted RBP13.22□□□□□ -0.29
NUP88-203ENST00000572019 SHANK2-AS3Q9BTD1 123 aa13.22□□□□□ -0.29
NUP88-203ENST00000572019 H3BP45 60 aa13.21□□□□□ -0.29
NUP88-203ENST00000572019 CTDSPLO15194 276 aa13.21□□□□□ -0.29
NUP88-203ENST00000572019 CFDP00746 253 aaPredicted RBP13.21□□□□□ -0.29
NUP88-203ENST00000572019 IL18Q14116 193 aa13.21□□□□□ -0.29
NUP88-203ENST00000572019 ACOT7LQ6ZUV0 252 aa13.21□□□□□ -0.29
NUP88-203ENST00000572019 TMEM256Q8N2U0 113 aa13.21□□□□□ -0.29
NUP88-203ENST00000572019 RXFP4Q8TDU9 374 aa13.21□□□□□ -0.29
NUP88-203ENST00000572019 UPK3BQ9BT76 320 aa13.21□□□□□ -0.29
NUP88-203ENST00000572019 MCUBQ9NWR8 336 aa13.21□□□□□ -0.29
NUP88-203ENST00000572019 WRBO00258 174 aa13.2□□□□□ -0.3
NUP88-203ENST00000572019 SNRPCP09234 159 aaKnown RBP13.2□□□□□ -0.3
NUP88-203ENST00000572019 XGP55808 180 aa13.2□□□□□ -0.3
NUP88-203ENST00000572019 LINC00315P59091 139 aa13.2□□□□□ -0.3
NUP88-203ENST00000572019 AKR1C1Q04828 323 aa13.2□□□□□ -0.3
NUP88-203ENST00000572019 TTC32Q5I0X7 151 aa13.2□□□□□ -0.3
NUP88-203ENST00000572019 TMEM263Q8WUH6 116 aaKnown RBP13.2□□□□□ -0.3
NUP88-203ENST00000572019 GPR82Q96P67 336 aa13.2□□□□□ -0.3
NUP88-203ENST00000572019 M6PRP20645 277 aa13.19□□□□□ -0.3
NUP88-203ENST00000572019 PSG3Q16557 428 aa13.19□□□□□ -0.3
NUP88-203ENST00000572019 SPANXN5Q5MJ07 72 aa13.19□□□□□ -0.3
NUP88-203ENST00000572019 DIRAS2Q96HU8 199 aa13.19□□□□□ -0.3
NUP88-203ENST00000572019 SCP2D1Q9UJQ7 156 aa13.19□□□□□ -0.3
NUP88-203ENST00000572019 MRPS16Q9Y3D3 137 aaKnown RBP13.19□□□□□ -0.3
NUP88-203ENST00000572019 GAGE12BA1L429 117 aa13.18□□□□□ -0.3
NUP88-203ENST00000572019 MRPS12O15235 138 aaKnown RBP13.18□□□□□ -0.3
NUP88-203ENST00000572019 CCNKO75909 580 aa13.18□□□□□ -0.3
NUP88-203ENST00000572019 GAGE7O76087 117 aa13.18□□□□□ -0.3
NUP88-203ENST00000572019 GAGE12FP0CL80 117 aa13.18□□□□□ -0.3
NUP88-203ENST00000572019 GAGE12GP0CL81 117 aa13.18□□□□□ -0.3
NUP88-203ENST00000572019 GAGE12IP0CL82 117 aa13.18□□□□□ -0.3
NUP88-203ENST00000572019 INAFM2P0DMQ5 153 aa13.18□□□□□ -0.3
NUP88-203ENST00000572019 SRPXP78539 464 aa13.18□□□□□ -0.3
NUP88-203ENST00000572019 CYP2G1PQ6ZSU1 146 aa13.18□□□□□ -0.3
NUP88-203ENST00000572019 TMED4Q7Z7H5 227 aa13.18□□□□□ -0.3
NUP88-203ENST00000572019 TNFRSF18Q9Y5U5 241 aa13.18□□□□□ -0.3
NUP88-203ENST00000572019 MYCBP2O75592 4640 aa13.17□□□□□ -0.3
NUP88-203ENST00000572019 A0A087X0K7 114 aa13.17□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 32.9 ms