RNA–Protein interactions for RNA: ENST00000570359.1

VPS53-206, Transcript of VPS53, GARP complex subunit, humanhuman

Gene VPS53, Length 2,781 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-206ENST00000570359 IGLV2-8P01709 118 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 PDLIM4P50479 330 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 COTL1Q14019 142 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 GOLT1AQ6ZVE7 132 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 PIP4P2Q8N4L2 257 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 ATG101Q9BSB4 218 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 SIRPDQ9H106 197 aa7.83□□□□□ -1.16
VPS53-206ENST00000570359 C9JCJ5 164 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 NUPR1O60356 82 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 ATP5J2P56134 94 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 LMO4P61968 165 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 PRNTQ86SH4 94 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 IGF2BP2-AS1Q96M15 143 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 NAT8BQ9UHF3 227 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 IGHV4-61A0A0C4DH41 118 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 ZNF207O43670 478 aaKnown RBP7.82□□□□□ -1.16
VPS53-206ENST00000570359 RPLP1P05386 114 aaKnown RBP7.82□□□□□ -1.16
VPS53-206ENST00000570359 CD99P14209 185 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 GP9P14770 177 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 CAMPP49913 170 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 IQCJQ1A5X6 159 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 SAPCD1Q5SSQ6 148 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 CCDC144NLQ6NUI1 221 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 UNQ5815/PRO19632Q6UWF5 114 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 CMTM2Q8TAZ6 248 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 ZNF586Q9NXT0 402 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 EPDR1Q9UM22 224 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 KIR2DL5BA0A0G2JN68 375 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 KIR2DL5BA0A0G2JPC4 375 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 AMY1AP04745 511 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 RPL15P61313 204 aaKnown RBP7.82□□□□□ -1.16
VPS53-206ENST00000570359 KIR2DL5AQ8N109 375 aa7.82□□□□□ -1.16
VPS53-206ENST00000570359 SSBP4Q9BWG4 385 aaPredicted RBP7.82□□□□□ -1.16
VPS53-206ENST00000570359 M0R3E3 92 aa7.81□□□□□ -1.16
VPS53-206ENST00000570359 ATP6V0E1O15342 81 aa7.81□□□□□ -1.16
VPS53-206ENST00000570359 GPR183P32249 361 aa7.81□□□□□ -1.16
VPS53-206ENST00000570359 C1orf194Q5T5A4 169 aa7.81□□□□□ -1.16
VPS53-206ENST00000570359 TCF24Q7RTU0 167 aa7.81□□□□□ -1.16
VPS53-206ENST00000570359 CIARTQ8N365 385 aaPredicted RBP7.81□□□□□ -1.16
VPS53-206ENST00000570359 RNF125Q96EQ8 232 aa7.81□□□□□ -1.16
VPS53-206ENST00000570359 FANCD2OSQ96PS1 177 aa7.81□□□□□ -1.16
VPS53-206ENST00000570359 TPPP3Q9BW30 176 aa7.81□□□□□ -1.16
VPS53-206ENST00000570359 FBXL7Q9UJT9 491 aa7.81□□□□□ -1.16
VPS53-206ENST00000570359 IGHV7-81A0A0B4J1V7 117 aa7.81□□□□□ -1.16
VPS53-206ENST00000570359 NDUFA3O95167 84 aa7.81□□□□□ -1.16
VPS53-206ENST00000570359 FAM106CPP0CH98 169 aa7.81□□□□□ -1.16
VPS53-206ENST00000570359 FOXL1Q12952 345 aa7.81□□□□□ -1.16
VPS53-206ENST00000570359 BTF3L4Q96K17 158 aa7.81□□□□□ -1.16
VPS53-206ENST00000570359 LINC00322Q6ZN03 302 aaPredicted RBP7.8□□□□□ -1.16
VPS53-206ENST00000570359 BAGE3Q86Y29 109 aa7.8□□□□□ -1.16
VPS53-206ENST00000570359 NUDT10Q8NFP7 164 aa7.8□□□□□ -1.16
VPS53-206ENST00000570359 NPBQ8NG41 125 aa7.8□□□□□ -1.16
VPS53-206ENST00000570359 NUDT11Q96G61 164 aa7.8□□□□□ -1.16
VPS53-206ENST00000570359 C21orf62Q9NYP8 219 aa7.8□□□□□ -1.16
VPS53-206ENST00000570359 CDC42EP3Q9UKI2 254 aa7.8□□□□□ -1.16
VPS53-206ENST00000570359 IGHV4-30-2A0A087WSY4 118 aa7.8□□□□□ -1.16
VPS53-206ENST00000570359 NPFFO15130 113 aa7.8□□□□□ -1.16
VPS53-206ENST00000570359 ZNF562Q6V9R5 426 aa7.8□□□□□ -1.16
VPS53-206ENST00000570359 Q8N9W7 124 aa7.8□□□□□ -1.16
VPS53-206ENST00000570359 CHRDL1Q9BU40 450 aa7.8□□□□□ -1.16
VPS53-206ENST00000570359 NAV2Q8IVL1 2488 aa7.8□□□□□ -1.16
VPS53-206ENST00000570359 CCDC168Q8NDH2 2452 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 CENPVL3A0A0U1RRI6 287 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 TYMSP04818 313 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 IGHV4-38-2P0DP08 117 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 MFAP4P55083 255 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 ZNF491Q8N8L2 437 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 RNF5Q99942 180 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 HLA-DRB1P01911 266 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 NPSP0C0P6 89 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 CRISP2P16562 243 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 COL8A1P27658 744 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 UBE2E1P51965 193 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 RPL19P84098 196 aaKnown RBP7.79□□□□□ -1.16
VPS53-206ENST00000570359 PAX2Q02962 417 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 C15orf32Q32M92 178 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 OR4F17Q8NGA8 305 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 PIMREGQ9BSJ6 248 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 FBN2P35556 2912 aa7.79□□□□□ -1.16
VPS53-206ENST00000570359 SONP18583 2426 aaKnown RBP7.78□□□□□ -1.16
VPS53-206ENST00000570359 IGLV11-55A0A075B6I3 123 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 TMSB15BA0A087X1C1 80 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 TCRAP04437 139 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 BRS3P32247 399 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 CLEC19AQ6UXS0 136 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 STXBP6Q8NFX7 210 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 TMEM18Q96B42 140 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 MUC21A0A0G2JKD1 596 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 MUC21A0A140T8X8 626 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 HIGD1CA8MV81 97 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 SERF1AO75920 110 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 SCGB1D1O95968 90 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 EGR2P11161 476 aaPredicted RBP7.78□□□□□ -1.16
VPS53-206ENST00000570359 HLA-DMBP28068 263 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 RHOGP84095 191 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 MUC21Q5SSG8 566 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 CLEC2AQ6UVW9 174 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 LCNL1Q6ZST4 164 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 BPIFA4PQ86YQ2 179 aa7.78□□□□□ -1.16
VPS53-206ENST00000570359 C5orf17Q8NAS9 161 aa7.78□□□□□ -1.16
Retrieved 100 of 20,778 RNA–protein pairs in 33.8 ms