RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 PVALBP20472 110 aaPredicted RBP7.19□□□□□ -1.26
CLN3-220ENST00000566040 S100A11P31949 105 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 BMI1P35226 326 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 RPL29P47914 159 aaKnown RBP7.19□□□□□ -1.26
CLN3-220ENST00000566040 CLINT1Q14677 625 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 DEFB135Q30KP9 77 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 PSMG4Q5JS54 123 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 SPATA31B1PQ5VZV4 182 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 IGFL4Q6B9Z1 124 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 STX12Q86Y82 276 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 KIR2DL5AQ8N109 375 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 CSNK1G2-AS1Q8NCQ2 148 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 KIR2DL5BQ8NHK3 375 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 THAP6Q8TBB0 222 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 WWC2-AS2Q96NR7 200 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 SLC25A22Q9H936 323 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 SEPSECSQ9HD40 501 aaKnown RBP7.19□□□□□ -1.26
CLN3-220ENST00000566040 HIGD1AQ9Y241 93 aa7.19□□□□□ -1.26
CLN3-220ENST00000566040 RYR2Q92736 4967 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 F6UB75 175 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 H3BMM0 161 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 H3BQ15 152 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 DNASE2O00115 360 aaPredicted RBP7.18□□□□□ -1.26
CLN3-220ENST00000566040 HYPMO75409 117 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 GIPP09681 153 aaPredicted RBP7.18□□□□□ -1.26
CLN3-220ENST00000566040 IGLC2P0DOY2 106 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 FGF7P21781 194 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 RPL12P30050 165 aaKnown RBP7.18□□□□□ -1.26
CLN3-220ENST00000566040 PSMB3P49720 205 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 RPL11P62913 178 aaKnown RBP7.18□□□□□ -1.26
CLN3-220ENST00000566040 BAXQ07812 192 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 ATP6V1FQ16864 119 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 AMTNQ6UX39 209 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 ZNF709Q8N972 641 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 RNF183Q96D59 192 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 FAM167A-AS1Q96KT0 104 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 WDR61Q9GZS3 305 aaKnown RBP7.18□□□□□ -1.26
CLN3-220ENST00000566040 MED28Q9H204 178 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 SLC39A9Q9NUM3 307 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 PXMP4Q9Y6I8 212 aa7.18□□□□□ -1.26
CLN3-220ENST00000566040 SNRPCP09234 159 aaKnown RBP7.17□□□□□ -1.26
CLN3-220ENST00000566040 OR5G3P0C626 314 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 HLA-DRB4P13762 266 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 NUP62P37198 522 aaPredicted RBP7.17□□□□□ -1.26
CLN3-220ENST00000566040 AP2S1P53680 142 aaPredicted RBP7.17□□□□□ -1.26
CLN3-220ENST00000566040 PAFAH1B2P68402 229 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 HBG1P69891 147 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 HBG2P69892 147 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 PXDC1Q5TGL8 231 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 Q6ZWC4 215 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 LINC00305Q7Z4B0 112 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 OR8I2Q8N0Y5 310 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 RNF182Q8N6D2 247 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 SAT2Q96F10 170 aaPredicted RBP7.17□□□□□ -1.26
CLN3-220ENST00000566040 ZNF503Q96F45 646 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 NARS2Q96I59 477 aaKnown RBP7.17□□□□□ -1.26
CLN3-220ENST00000566040 ATP5SQ99766 215 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 RSG1Q9BU20 258 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 SMIM3Q9BZL3 60 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 SAV1Q9H4B6 383 aaPredicted RBP7.17□□□□□ -1.26
CLN3-220ENST00000566040 FBXL17Q9UF56 701 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 TP53TG1Q9Y2A0 90 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 HLA-DRB4X5D2U9 266 aa7.17□□□□□ -1.26
CLN3-220ENST00000566040 VPS13DQ5THJ4 4388 aa7.16□□□□□ -1.26
CLN3-220ENST00000566040 A0A0J9YX75 114 aa7.16□□□□□ -1.26
CLN3-220ENST00000566040 SMLR1H3BR10 107 aa7.16□□□□□ -1.26
CLN3-220ENST00000566040 H3BTX0 84 aa7.16□□□□□ -1.26
CLN3-220ENST00000566040 ISLRO14498 428 aa7.16□□□□□ -1.26
CLN3-220ENST00000566040 B2MP61769 119 aa7.16□□□□□ -1.26
CLN3-220ENST00000566040 ACTL10Q5JWF8 245 aa7.16□□□□□ -1.26
CLN3-220ENST00000566040 AQP10Q96PS8 301 aa7.16□□□□□ -1.26
CLN3-220ENST00000566040 SLC25A2Q9BXI2 301 aa7.16□□□□□ -1.26
CLN3-220ENST00000566040 SLC25A31Q9H0C2 315 aa7.16□□□□□ -1.26
CLN3-220ENST00000566040 HYDINQ4G0P3 5121 aa7.16□□□□□ -1.26
CLN3-220ENST00000566040 PRAC2D3DTV9 90 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 COX7A2P2O60397 106 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 MPDU1O75352 247 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 EIF3GO75821 320 aaKnown RBP eCLIP7.15□□□□□ -1.26
CLN3-220ENST00000566040 NDUFB4O95168 129 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 RLN2P04090 185 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 APOC4P55056 127 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 CMC4P56277 68 aaPredicted RBP7.15□□□□□ -1.26
CLN3-220ENST00000566040 RAP2BP61225 183 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 C10orf113Q5VZT2 155 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 OR11H4Q8NGC9 324 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 PPP1R14BQ96C90 147 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 CLUHP3Q96NS8 147 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 GPR82Q96P67 336 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 PARD6GQ9BYG4 376 aaPredicted RBP7.15□□□□□ -1.26
CLN3-220ENST00000566040 CSTL1Q9H114 145 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 ZMAT4Q9H898 229 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 DNAJC4Q9NNZ3 241 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 ZNF331Q9NQX6 463 aaPredicted RBP7.15□□□□□ -1.26
CLN3-220ENST00000566040 ZNF586Q9NXT0 402 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 TNFSF18Q9UNG2 199 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 X6R8D5 127 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 DNAH6Q9C0G6 4158 aa7.15□□□□□ -1.26
CLN3-220ENST00000566040 ZNF705EA8MWA4 302 aaPredicted RBP7.14□□□□□ -1.27
CLN3-220ENST00000566040 UBE2CO00762 179 aa7.14□□□□□ -1.27
CLN3-220ENST00000566040 SPRY2O43597 315 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 49 ms