RNA–Protein interactions for RNA: ENST00000564468.5

CLK3-216, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 929 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-216ENST00000564468 C1QTNF4Q9BXJ3 329 aa9.82□□□□□ -0.84
CLK3-216ENST00000564468 SLC25A31Q9H0C2 315 aa9.82□□□□□ -0.84
CLK3-216ENST00000564468 SLC25A32Q9H2D1 315 aa9.82□□□□□ -0.84
CLK3-216ENST00000564468 UQCC1Q9NVA1 299 aa9.82□□□□□ -0.84
CLK3-216ENST00000564468 DOK5Q9P104 306 aa9.82□□□□□ -0.84
CLK3-216ENST00000564468 SACSQ9NZJ4 4579 aa9.82□□□□□ -0.84
CLK3-216ENST00000564468 ELOA3CA0A087WX78 387 aaPredicted RBP9.81□□□□□ -0.84
CLK3-216ENST00000564468 A0A0J9YWU9 116 aa9.81□□□□□ -0.84
CLK3-216ENST00000564468 SIX6O95475 246 aa9.81□□□□□ -0.84
CLK3-216ENST00000564468 CAMLGP49069 296 aa9.81□□□□□ -0.84
CLK3-216ENST00000564468 Q6ZRG5 221 aa9.81□□□□□ -0.84
CLK3-216ENST00000564468 OR11H2Q8NH07 326 aa9.81□□□□□ -0.84
CLK3-216ENST00000564468 C16orf92Q96LL3 132 aa9.81□□□□□ -0.84
CLK3-216ENST00000564468 RSG1Q9BU20 258 aa9.81□□□□□ -0.84
CLK3-216ENST00000564468 ARV1Q9H2C2 271 aa9.81□□□□□ -0.84
CLK3-216ENST00000564468 RPRMQ9NS64 109 aa9.81□□□□□ -0.84
CLK3-216ENST00000564468 H3BMM0 161 aa9.8□□□□□ -0.84
CLK3-216ENST00000564468 SOCS3O14543 225 aa9.8□□□□□ -0.84
CLK3-216ENST00000564468 PTTG1O95997 202 aa9.8□□□□□ -0.84
CLK3-216ENST00000564468 PET100P0DJ07 73 aa9.8□□□□□ -0.84
CLK3-216ENST00000564468 HLA-DRB4P13762 266 aa9.8□□□□□ -0.84
CLK3-216ENST00000564468 VWC2Q2TAL6 325 aa9.8□□□□□ -0.84
CLK3-216ENST00000564468 EBLN2Q6P2I7 272 aa9.8□□□□□ -0.84
CLK3-216ENST00000564468 FOXI2Q6ZQN5 318 aa9.8□□□□□ -0.84
CLK3-216ENST00000564468 SCRT1Q9BWW7 348 aa9.8□□□□□ -0.84
CLK3-216ENST00000564468 SAV1Q9H4B6 383 aaPredicted RBP9.8□□□□□ -0.84
CLK3-216ENST00000564468 WDR83OSQ9Y284 106 aa9.8□□□□□ -0.84
CLK3-216ENST00000564468 HLA-DRB4X5D2U9 266 aa9.8□□□□□ -0.84
CLK3-216ENST00000564468 IGSF23A1L1A6 192 aa9.79□□□□□ -0.84
CLK3-216ENST00000564468 COX7A2P2O60397 106 aa9.79□□□□□ -0.84
CLK3-216ENST00000564468 MPDU1O75352 247 aa9.79□□□□□ -0.84
CLK3-216ENST00000564468 BAXQ07812 192 aa9.79□□□□□ -0.84
CLK3-216ENST00000564468 LRRC37A5PQ49AS3 106 aa9.79□□□□□ -0.84
CLK3-216ENST00000564468 OR1L4Q8NGR5 311 aa9.79□□□□□ -0.84
CLK3-216ENST00000564468 CLUHP3Q96NS8 147 aa9.79□□□□□ -0.84
CLK3-216ENST00000564468 MGST2Q99735 147 aa9.79□□□□□ -0.84
CLK3-216ENST00000564468 LYSTQ99698 3801 aa9.79□□□□□ -0.84
CLK3-216ENST00000564468 UBE2L5PA0A1B0GUS4 154 aa9.78□□□□□ -0.84
CLK3-216ENST00000564468 RPL29P47914 159 aaKnown RBP9.78□□□□□ -0.84
CLK3-216ENST00000564468 FGL1Q08830 312 aa9.78□□□□□ -0.84
CLK3-216ENST00000564468 C10orf113Q5VZT2 155 aa9.78□□□□□ -0.84
CLK3-216ENST00000564468 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.78□□□□□ -0.84
CLK3-216ENST00000564468 LINC00305Q7Z4B0 112 aa9.78□□□□□ -0.84
CLK3-216ENST00000564468 LRRC20Q8TCA0 184 aa9.78□□□□□ -0.84
CLK3-216ENST00000564468 CHAC2Q8WUX2 184 aa9.78□□□□□ -0.84
CLK3-216ENST00000564468 UHRF2Q96PU4 802 aa9.78□□□□□ -0.84
CLK3-216ENST00000564468 PFDN5Q99471 154 aa9.78□□□□□ -0.84
CLK3-216ENST00000564468 C11orf68Q9H3H3 251 aaKnown RBP9.78□□□□□ -0.84
CLK3-216ENST00000564468 DNAJC4Q9NNZ3 241 aa9.78□□□□□ -0.84
CLK3-216ENST00000564468 DNAH1Q9P2D7 4330 aa9.78□□□□□ -0.84
CLK3-216ENST00000564468 A0A087X0K7 114 aa9.77□□□□□ -0.85
CLK3-216ENST00000564468 C4BPBP20851 252 aa9.77□□□□□ -0.85
CLK3-216ENST00000564468 H2BFSP57053 126 aa9.77□□□□□ -0.85
CLK3-216ENST00000564468 EWSR1Q01844 656 aaKnown RBP eCLIP9.77□□□□□ -0.85
CLK3-216ENST00000564468 PATE2Q6UY27 113 aa9.77□□□□□ -0.85
CLK3-216ENST00000564468 BPIFA4PQ86YQ2 179 aa9.77□□□□□ -0.85
CLK3-216ENST00000564468 PPP1R1CQ8WVI7 109 aa9.77□□□□□ -0.85
CLK3-216ENST00000564468 GIG44P09565 113 aaPredicted RBP9.76□□□□□ -0.85
CLK3-216ENST00000564468 MIFP14174 115 aa9.76□□□□□ -0.85
CLK3-216ENST00000564468 CXCL2P19875 107 aa9.76□□□□□ -0.85
CLK3-216ENST00000564468 FGF7P21781 194 aa9.76□□□□□ -0.85
CLK3-216ENST00000564468 B2MP61769 119 aa9.76□□□□□ -0.85
CLK3-216ENST00000564468 PRR20EP86478 221 aa9.76□□□□□ -0.85
CLK3-216ENST00000564468 PRR20CP86479 221 aa9.76□□□□□ -0.85
CLK3-216ENST00000564468 PRR20DP86480 221 aa9.76□□□□□ -0.85
CLK3-216ENST00000564468 PRR20BP86481 221 aa9.76□□□□□ -0.85
CLK3-216ENST00000564468 PRR20AP86496 221 aa9.76□□□□□ -0.85
CLK3-216ENST00000564468 NHLH2Q02577 135 aa9.76□□□□□ -0.85
CLK3-216ENST00000564468 MIC13Q5XKP0 118 aa9.76□□□□□ -0.85
CLK3-216ENST00000564468 OR4B1Q8NGF8 309 aa9.76□□□□□ -0.85
CLK3-216ENST00000564468 OR5C1Q8NGR4 320 aa9.76□□□□□ -0.85
CLK3-216ENST00000564468 MFFQ9GZY8 342 aa9.76□□□□□ -0.85
CLK3-216ENST00000564468 OR5AC2Q9NZP5 309 aa9.76□□□□□ -0.85
CLK3-216ENST00000564468 A0A0J9YX75 114 aa9.75□□□□□ -0.85
CLK3-216ENST00000564468 CXorf65A6NEN9 183 aa9.75□□□□□ -0.85
CLK3-216ENST00000564468 NUPR2A6NF83 97 aa9.75□□□□□ -0.85
CLK3-216ENST00000564468 ZNF705EA8MWA4 302 aaPredicted RBP9.75□□□□□ -0.85
CLK3-216ENST00000564468 H0YIZ8 118 aa9.75□□□□□ -0.85
CLK3-216ENST00000564468 JTBO76095 146 aa9.75□□□□□ -0.85
CLK3-216ENST00000564468 DUSP14O95147 198 aaKnown RBP9.75□□□□□ -0.85
CLK3-216ENST00000564468 MPC2O95563 127 aa9.75□□□□□ -0.85
CLK3-216ENST00000564468 OPCMLQ14982 345 aa9.75□□□□□ -0.85
CLK3-216ENST00000564468 GDF5OSQ5U4N7 250 aa9.75□□□□□ -0.85
CLK3-216ENST00000564468 LCN15Q6UWW0 184 aa9.75□□□□□ -0.85
CLK3-216ENST00000564468 TMEM37Q8WXS4 190 aa9.75□□□□□ -0.85
CLK3-216ENST00000564468 KCNIP2Q9NS61 270 aa9.75□□□□□ -0.85
CLK3-216ENST00000564468 SLC39A9Q9NUM3 307 aa9.75□□□□□ -0.85
CLK3-216ENST00000564468 CLEC5AQ9NY25 188 aa9.75□□□□□ -0.85
CLK3-216ENST00000564468 XCL2Q9UBD3 114 aa9.75□□□□□ -0.85
CLK3-216ENST00000564468 CSMD3Q7Z407 3707 aa9.74□□□□□ -0.85
CLK3-216ENST00000564468 IGKV3-20P01619 116 aa9.74□□□□□ -0.85
CLK3-216ENST00000564468 PSG9Q00887 426 aa9.74□□□□□ -0.85
CLK3-216ENST00000564468 FAM78BQ5VT40 261 aa9.74□□□□□ -0.85
CLK3-216ENST00000564468 ZNF709Q8N972 641 aa9.74□□□□□ -0.85
CLK3-216ENST00000564468 CSNK1G2-AS1Q8NCQ2 148 aa9.74□□□□□ -0.85
CLK3-216ENST00000564468 ZNF738Q8NE65 137 aa9.74□□□□□ -0.85
CLK3-216ENST00000564468 C20orf173Q96LM9 149 aa9.74□□□□□ -0.85
CLK3-216ENST00000564468 C17orf77Q96MU5 243 aa9.74□□□□□ -0.85
CLK3-216ENST00000564468 SLC50A1Q9BRV3 221 aa9.74□□□□□ -0.85
CLK3-216ENST00000564468 NPCDR1Q9BY65 106 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 91.1 ms