RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 DOK5Q9P104 306 aa9.82□□□□□ -0.84
CLK3-213ENST00000563842 ELOA3CA0A087WX78 387 aaPredicted RBP9.81□□□□□ -0.84
CLK3-213ENST00000563842 A0A0J9YWU9 116 aa9.81□□□□□ -0.84
CLK3-213ENST00000563842 SIX6O95475 246 aa9.81□□□□□ -0.84
CLK3-213ENST00000563842 CAMLGP49069 296 aa9.81□□□□□ -0.84
CLK3-213ENST00000563842 Q6ZRG5 221 aa9.81□□□□□ -0.84
CLK3-213ENST00000563842 OR11H2Q8NH07 326 aa9.81□□□□□ -0.84
CLK3-213ENST00000563842 C16orf92Q96LL3 132 aa9.81□□□□□ -0.84
CLK3-213ENST00000563842 RSG1Q9BU20 258 aa9.81□□□□□ -0.84
CLK3-213ENST00000563842 ARV1Q9H2C2 271 aa9.81□□□□□ -0.84
CLK3-213ENST00000563842 RPRMQ9NS64 109 aa9.81□□□□□ -0.84
CLK3-213ENST00000563842 H3BMM0 161 aa9.8□□□□□ -0.84
CLK3-213ENST00000563842 SOCS3O14543 225 aa9.8□□□□□ -0.84
CLK3-213ENST00000563842 PTTG1O95997 202 aa9.8□□□□□ -0.84
CLK3-213ENST00000563842 PET100P0DJ07 73 aa9.8□□□□□ -0.84
CLK3-213ENST00000563842 HLA-DRB4P13762 266 aa9.8□□□□□ -0.84
CLK3-213ENST00000563842 VWC2Q2TAL6 325 aa9.8□□□□□ -0.84
CLK3-213ENST00000563842 EBLN2Q6P2I7 272 aa9.8□□□□□ -0.84
CLK3-213ENST00000563842 FOXI2Q6ZQN5 318 aa9.8□□□□□ -0.84
CLK3-213ENST00000563842 SCRT1Q9BWW7 348 aa9.8□□□□□ -0.84
CLK3-213ENST00000563842 SAV1Q9H4B6 383 aaPredicted RBP9.8□□□□□ -0.84
CLK3-213ENST00000563842 WDR83OSQ9Y284 106 aa9.8□□□□□ -0.84
CLK3-213ENST00000563842 HLA-DRB4X5D2U9 266 aa9.8□□□□□ -0.84
CLK3-213ENST00000563842 IGSF23A1L1A6 192 aa9.79□□□□□ -0.84
CLK3-213ENST00000563842 COX7A2P2O60397 106 aa9.79□□□□□ -0.84
CLK3-213ENST00000563842 MPDU1O75352 247 aa9.79□□□□□ -0.84
CLK3-213ENST00000563842 BAXQ07812 192 aa9.79□□□□□ -0.84
CLK3-213ENST00000563842 LRRC37A5PQ49AS3 106 aa9.79□□□□□ -0.84
CLK3-213ENST00000563842 OR1L4Q8NGR5 311 aa9.79□□□□□ -0.84
CLK3-213ENST00000563842 CLUHP3Q96NS8 147 aa9.79□□□□□ -0.84
CLK3-213ENST00000563842 MGST2Q99735 147 aa9.79□□□□□ -0.84
CLK3-213ENST00000563842 UBE2L5PA0A1B0GUS4 154 aa9.78□□□□□ -0.84
CLK3-213ENST00000563842 RPL29P47914 159 aaKnown RBP9.78□□□□□ -0.84
CLK3-213ENST00000563842 FGL1Q08830 312 aa9.78□□□□□ -0.84
CLK3-213ENST00000563842 C10orf113Q5VZT2 155 aa9.78□□□□□ -0.84
CLK3-213ENST00000563842 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.78□□□□□ -0.84
CLK3-213ENST00000563842 LINC00305Q7Z4B0 112 aa9.78□□□□□ -0.84
CLK3-213ENST00000563842 LRRC20Q8TCA0 184 aa9.78□□□□□ -0.84
CLK3-213ENST00000563842 CHAC2Q8WUX2 184 aa9.78□□□□□ -0.84
CLK3-213ENST00000563842 UHRF2Q96PU4 802 aa9.78□□□□□ -0.84
CLK3-213ENST00000563842 PFDN5Q99471 154 aa9.78□□□□□ -0.84
CLK3-213ENST00000563842 C11orf68Q9H3H3 251 aaKnown RBP9.78□□□□□ -0.84
CLK3-213ENST00000563842 DNAJC4Q9NNZ3 241 aa9.78□□□□□ -0.84
CLK3-213ENST00000563842 A0A087X0K7 114 aa9.77□□□□□ -0.85
CLK3-213ENST00000563842 C4BPBP20851 252 aa9.77□□□□□ -0.85
CLK3-213ENST00000563842 H2BFSP57053 126 aa9.77□□□□□ -0.85
CLK3-213ENST00000563842 EWSR1Q01844 656 aaKnown RBP eCLIP9.77□□□□□ -0.85
CLK3-213ENST00000563842 PATE2Q6UY27 113 aa9.77□□□□□ -0.85
CLK3-213ENST00000563842 BPIFA4PQ86YQ2 179 aa9.77□□□□□ -0.85
CLK3-213ENST00000563842 PPP1R1CQ8WVI7 109 aa9.77□□□□□ -0.85
CLK3-213ENST00000563842 GIG44P09565 113 aaPredicted RBP9.76□□□□□ -0.85
CLK3-213ENST00000563842 MIFP14174 115 aa9.76□□□□□ -0.85
CLK3-213ENST00000563842 CXCL2P19875 107 aa9.76□□□□□ -0.85
CLK3-213ENST00000563842 FGF7P21781 194 aa9.76□□□□□ -0.85
CLK3-213ENST00000563842 B2MP61769 119 aa9.76□□□□□ -0.85
CLK3-213ENST00000563842 PRR20EP86478 221 aa9.76□□□□□ -0.85
CLK3-213ENST00000563842 PRR20CP86479 221 aa9.76□□□□□ -0.85
CLK3-213ENST00000563842 PRR20DP86480 221 aa9.76□□□□□ -0.85
CLK3-213ENST00000563842 PRR20BP86481 221 aa9.76□□□□□ -0.85
CLK3-213ENST00000563842 PRR20AP86496 221 aa9.76□□□□□ -0.85
CLK3-213ENST00000563842 NHLH2Q02577 135 aa9.76□□□□□ -0.85
CLK3-213ENST00000563842 MIC13Q5XKP0 118 aa9.76□□□□□ -0.85
CLK3-213ENST00000563842 OR4B1Q8NGF8 309 aa9.76□□□□□ -0.85
CLK3-213ENST00000563842 OR5C1Q8NGR4 320 aa9.76□□□□□ -0.85
CLK3-213ENST00000563842 MFFQ9GZY8 342 aa9.76□□□□□ -0.85
CLK3-213ENST00000563842 OR5AC2Q9NZP5 309 aa9.76□□□□□ -0.85
CLK3-213ENST00000563842 TENM2Q9NT68 2774 aa9.75□□□□□ -0.85
CLK3-213ENST00000563842 A0A0J9YX75 114 aa9.75□□□□□ -0.85
CLK3-213ENST00000563842 CXorf65A6NEN9 183 aa9.75□□□□□ -0.85
CLK3-213ENST00000563842 NUPR2A6NF83 97 aa9.75□□□□□ -0.85
CLK3-213ENST00000563842 ZNF705EA8MWA4 302 aaPredicted RBP9.75□□□□□ -0.85
CLK3-213ENST00000563842 H0YIZ8 118 aa9.75□□□□□ -0.85
CLK3-213ENST00000563842 DUSP14O95147 198 aaKnown RBP9.75□□□□□ -0.85
CLK3-213ENST00000563842 MPC2O95563 127 aa9.75□□□□□ -0.85
CLK3-213ENST00000563842 OPCMLQ14982 345 aa9.75□□□□□ -0.85
CLK3-213ENST00000563842 GDF5OSQ5U4N7 250 aa9.75□□□□□ -0.85
CLK3-213ENST00000563842 LCN15Q6UWW0 184 aa9.75□□□□□ -0.85
CLK3-213ENST00000563842 TMEM37Q8WXS4 190 aa9.75□□□□□ -0.85
CLK3-213ENST00000563842 KCNIP2Q9NS61 270 aa9.75□□□□□ -0.85
CLK3-213ENST00000563842 SLC39A9Q9NUM3 307 aa9.75□□□□□ -0.85
CLK3-213ENST00000563842 CLEC5AQ9NY25 188 aa9.75□□□□□ -0.85
CLK3-213ENST00000563842 XCL2Q9UBD3 114 aa9.75□□□□□ -0.85
CLK3-213ENST00000563842 CSMD3Q7Z407 3707 aa9.74□□□□□ -0.85
CLK3-213ENST00000563842 IGKV3-20P01619 116 aa9.74□□□□□ -0.85
CLK3-213ENST00000563842 PSG9Q00887 426 aa9.74□□□□□ -0.85
CLK3-213ENST00000563842 FAM78BQ5VT40 261 aa9.74□□□□□ -0.85
CLK3-213ENST00000563842 ZNF709Q8N972 641 aa9.74□□□□□ -0.85
CLK3-213ENST00000563842 CSNK1G2-AS1Q8NCQ2 148 aa9.74□□□□□ -0.85
CLK3-213ENST00000563842 ZNF738Q8NE65 137 aa9.74□□□□□ -0.85
CLK3-213ENST00000563842 C20orf173Q96LM9 149 aa9.74□□□□□ -0.85
CLK3-213ENST00000563842 C17orf77Q96MU5 243 aa9.74□□□□□ -0.85
CLK3-213ENST00000563842 SLC50A1Q9BRV3 221 aa9.74□□□□□ -0.85
CLK3-213ENST00000563842 NPCDR1Q9BY65 106 aa9.74□□□□□ -0.85
CLK3-213ENST00000563842 ALG5Q9Y673 324 aa9.74□□□□□ -0.85
CLK3-213ENST00000563842 PXMP4Q9Y6I8 212 aa9.74□□□□□ -0.85
CLK3-213ENST00000563842 C17orf112F2Z3M2 114 aa9.73□□□□□ -0.85
CLK3-213ENST00000563842 MRPS12O15235 138 aaKnown RBP9.73□□□□□ -0.85
CLK3-213ENST00000563842 JTBO76095 146 aa9.73□□□□□ -0.85
CLK3-213ENST00000563842 AMBPP02760 352 aa9.73□□□□□ -0.85
CLK3-213ENST00000563842 PMS2P11Q13670 270 aa9.73□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34.6 ms