RNA–Protein interactions for RNA: ENST00000563112.1

CLK3-210, Transcript of CDC like kinase 3, humanhuman

TSL 3

Gene CLK3, Length 665 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-210ENST00000563112 TEPPQ6URK8 271 aa12.17□□□□□ -0.46
CLK3-210ENST00000563112 ZNF431Q8TF32 576 aaPredicted RBP12.17□□□□□ -0.46
CLK3-210ENST00000563112 SLC25A39Q9BZJ4 359 aaPredicted RBP12.17□□□□□ -0.46
CLK3-210ENST00000563112 NUDT15Q9NV35 164 aa12.17□□□□□ -0.46
CLK3-210ENST00000563112 RNF24Q9Y225 148 aa12.17□□□□□ -0.46
CLK3-210ENST00000563112 RCL1Q9Y2P8 373 aaKnown RBP12.17□□□□□ -0.46
CLK3-210ENST00000563112 A0A0J9YX75 114 aa12.16□□□□□ -0.46
CLK3-210ENST00000563112 SMIM9A6NGZ8 99 aa12.16□□□□□ -0.46
CLK3-210ENST00000563112 IGLL5B9A064 214 aa12.16□□□□□ -0.46
CLK3-210ENST00000563112 H3BRN7 92 aa12.16□□□□□ -0.46
CLK3-210ENST00000563112 RPL7P18124 248 aaKnown RBP12.16□□□□□ -0.46
CLK3-210ENST00000563112 PLP1P60201 277 aa12.16□□□□□ -0.46
CLK3-210ENST00000563112 FGL1Q08830 312 aa12.16□□□□□ -0.46
CLK3-210ENST00000563112 FAM78BQ5VT40 261 aa12.16□□□□□ -0.46
CLK3-210ENST00000563112 GSG1LQ6UXU4 331 aa12.16□□□□□ -0.46
CLK3-210ENST00000563112 NEU1Q99519 415 aa12.16□□□□□ -0.46
CLK3-210ENST00000563112 SHANK2-AS3Q9BTD1 123 aa12.16□□□□□ -0.46
CLK3-210ENST00000563112 GGACTQ9BVM4 153 aa12.16□□□□□ -0.46
CLK3-210ENST00000563112 SCRT1Q9BWW7 348 aa12.16□□□□□ -0.46
CLK3-210ENST00000563112 IGHV3OR16-12A0A075B7B8 117 aa12.15□□□□□ -0.46
CLK3-210ENST00000563112 FAM240BA0A1B0GVZ2 78 aa12.15□□□□□ -0.46
CLK3-210ENST00000563112 C7orf66A4D0T2 115 aa12.15□□□□□ -0.46
CLK3-210ENST00000563112 TMEM189A5PLL7 270 aa12.15□□□□□ -0.46
CLK3-210ENST00000563112 C5orf51A6NDU8 294 aa12.15□□□□□ -0.46
CLK3-210ENST00000563112 F6UB75 175 aa12.15□□□□□ -0.46
CLK3-210ENST00000563112 CCSO14618 274 aa12.15□□□□□ -0.46
CLK3-210ENST00000563112 H2AFB2P0C5Z0 115 aa12.15□□□□□ -0.46
CLK3-210ENST00000563112 MZT2BQ6NZ67 158 aa12.15□□□□□ -0.46
CLK3-210ENST00000563112 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa12.15□□□□□ -0.46
CLK3-210ENST00000563112 ZNF705AQ6ZN79 300 aaPredicted RBP12.15□□□□□ -0.46
CLK3-210ENST00000563112 C12orf45Q8N5I9 185 aaPredicted RBP12.15□□□□□ -0.46
CLK3-210ENST00000563112 ARL6Q9H0F7 186 aa12.15□□□□□ -0.46
CLK3-210ENST00000563112 GOLT1BQ9Y3E0 138 aa12.15□□□□□ -0.46
CLK3-210ENST00000563112 LSM5Q9Y4Y9 91 aaKnown RBP12.15□□□□□ -0.46
CLK3-210ENST00000563112 BIRC6Q9NR09 4857 aa12.14□□□□□ -0.47
CLK3-210ENST00000563112 K7EPK0 472 aa12.14□□□□□ -0.47
CLK3-210ENST00000563112 GOSR2O14653 212 aa12.14□□□□□ -0.47
CLK3-210ENST00000563112 DEDDO75618 318 aa12.14□□□□□ -0.47
CLK3-210ENST00000563112 DUSP14O95147 198 aaKnown RBP12.14□□□□□ -0.47
CLK3-210ENST00000563112 BCAP31P51572 246 aa12.14□□□□□ -0.47
CLK3-210ENST00000563112 PXDC1Q5TGL8 231 aa12.14□□□□□ -0.47
CLK3-210ENST00000563112 Q6ZTC4 211 aa12.14□□□□□ -0.47
CLK3-210ENST00000563112 C20orf173Q96LM9 149 aa12.14□□□□□ -0.47
CLK3-210ENST00000563112 SEC22CQ9BRL7 303 aa12.14□□□□□ -0.47
CLK3-210ENST00000563112 SLC35B3Q9H1N7 401 aa12.14□□□□□ -0.47
CLK3-210ENST00000563112 ZNF705FA8MVS1 300 aaPredicted RBP12.13□□□□□ -0.47
CLK3-210ENST00000563112 ZNF705DP0CH99 300 aaPredicted RBP12.13□□□□□ -0.47
CLK3-210ENST00000563112 ZNF705BP0CI00 300 aaPredicted RBP12.13□□□□□ -0.47
CLK3-210ENST00000563112 PVALBP20472 110 aaPredicted RBP12.13□□□□□ -0.47
CLK3-210ENST00000563112 SLC38A11Q08AI6 406 aa12.13□□□□□ -0.47
CLK3-210ENST00000563112 ZNF546Q86UE3 836 aa12.13□□□□□ -0.47
CLK3-210ENST00000563112 ZNF709Q8N972 641 aa12.13□□□□□ -0.47
CLK3-210ENST00000563112 LRRC20Q8TCA0 184 aa12.13□□□□□ -0.47
CLK3-210ENST00000563112 C2orf50Q96LR7 162 aa12.13□□□□□ -0.47
CLK3-210ENST00000563112 C17orf77Q96MU5 243 aa12.13□□□□□ -0.47
CLK3-210ENST00000563112 RFNGQ9Y644 331 aa12.13□□□□□ -0.47
CLK3-210ENST00000563112 CAV2P51636 162 aa12.12□□□□□ -0.47
CLK3-210ENST00000563112 UHRF2Q96PU4 802 aa12.12□□□□□ -0.47
CLK3-210ENST00000563112 ARV1Q9H2C2 271 aa12.12□□□□□ -0.47
CLK3-210ENST00000563112 APLNQ9ULZ1 77 aa12.12□□□□□ -0.47
CLK3-210ENST00000563112 CELA1Q9UNI1 258 aa12.12□□□□□ -0.47
CLK3-210ENST00000563112 AGPAT2O15120 278 aa12.11□□□□□ -0.47
CLK3-210ENST00000563112 AMBPP02760 352 aa12.11□□□□□ -0.47
CLK3-210ENST00000563112 SPART-AS1P0CW21 52 aa12.11□□□□□ -0.47
CLK3-210ENST00000563112 EMP1P54849 157 aa12.11□□□□□ -0.47
CLK3-210ENST00000563112 ARL16Q0P5N6 197 aa12.11□□□□□ -0.47
CLK3-210ENST00000563112 RAB31Q13636 194 aa12.11□□□□□ -0.47
CLK3-210ENST00000563112 C12orf74Q32Q52 190 aa12.11□□□□□ -0.47
CLK3-210ENST00000563112 IGFL4Q6B9Z1 124 aa12.11□□□□□ -0.47
CLK3-210ENST00000563112 ZNF738Q8NE65 137 aa12.11□□□□□ -0.47
CLK3-210ENST00000563112 TMEM208Q9BTX3 173 aa12.11□□□□□ -0.47
CLK3-210ENST00000563112 DEFB131BA0A096LNP1 70 aa12.1□□□□□ -0.47
CLK3-210ENST00000563112 TRAV8-2A0A0B4J237 113 aa12.1□□□□□ -0.47
CLK3-210ENST00000563112 TEX48A0A1B0GUV7 120 aa12.1□□□□□ -0.47
CLK3-210ENST00000563112 HBE1P02100 147 aa12.1□□□□□ -0.47
CLK3-210ENST00000563112 CNN1P51911 297 aaKnown RBP12.1□□□□□ -0.47
CLK3-210ENST00000563112 PATE2Q6UY27 113 aa12.1□□□□□ -0.47
CLK3-210ENST00000563112 ZNF767PQ75MW2 155 aa12.1□□□□□ -0.47
CLK3-210ENST00000563112 RPP25LQ8N5L8 163 aaKnown RBP12.1□□□□□ -0.47
CLK3-210ENST00000563112 RNF182Q8N6D2 247 aa12.1□□□□□ -0.47
CLK3-210ENST00000563112 RNF126Q9BV68 326 aa12.1□□□□□ -0.47
CLK3-210ENST00000563112 IGHV4-4A0A075B6R2 117 aa12.09□□□□□ -0.47
CLK3-210ENST00000563112 A0A087X0K7 114 aa12.09□□□□□ -0.47
CLK3-210ENST00000563112 FAM24AA6NFZ4 105 aa12.09□□□□□ -0.47
CLK3-210ENST00000563112 A8MTW9 85 aa12.09□□□□□ -0.47
CLK3-210ENST00000563112 COX7A2P2O60397 106 aa12.09□□□□□ -0.47
CLK3-210ENST00000563112 S100A10P60903 97 aa12.09□□□□□ -0.47
CLK3-210ENST00000563112 ASAH1Q13510 395 aa12.09□□□□□ -0.47
CLK3-210ENST00000563112 RRN3P1Q2M238 152 aa12.09□□□□□ -0.47
CLK3-210ENST00000563112 LINC00305Q7Z4B0 112 aa12.09□□□□□ -0.47
CLK3-210ENST00000563112 IGF2BP2-AS1Q96M15 143 aa12.09□□□□□ -0.47
CLK3-210ENST00000563112 PPP1R14DQ9NXH3 145 aa12.09□□□□□ -0.47
CLK3-210ENST00000563112 CST7O76096 145 aa12.08□□□□□ -0.48
CLK3-210ENST00000563112 CAMLGP49069 296 aa12.08□□□□□ -0.48
CLK3-210ENST00000563112 AMTNQ6UX39 209 aa12.08□□□□□ -0.48
CLK3-210ENST00000563112 Q6ZRG5 221 aa12.08□□□□□ -0.48
CLK3-210ENST00000563112 C1orf158Q8N1D5 194 aa12.08□□□□□ -0.48
CLK3-210ENST00000563112 OR11H7Q8NGC8 314 aa12.08□□□□□ -0.48
CLK3-210ENST00000563112 ENKURQ8TC29 256 aa12.08□□□□□ -0.48
CLK3-210ENST00000563112 MGST2Q99735 147 aa12.08□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 53.8 ms