RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 C20orf173Q96LM9 149 aa11.36□□□□□ -0.59
VPS39-203ENST00000561797 UHRF2Q96PU4 802 aa11.36□□□□□ -0.59
VPS39-203ENST00000561797 SHANK2-AS3Q9BTD1 123 aa11.36□□□□□ -0.59
VPS39-203ENST00000561797 C1QTNF4Q9BXJ3 329 aa11.36□□□□□ -0.59
VPS39-203ENST00000561797 ARL6Q9H0F7 186 aa11.36□□□□□ -0.59
VPS39-203ENST00000561797 DYNC2H1Q8NCM8 4307 aaKnown RBP11.36□□□□□ -0.59
VPS39-203ENST00000561797 ZNF705EA8MWA4 302 aaPredicted RBP11.35□□□□□ -0.59
VPS39-203ENST00000561797 GOSR2O14653 212 aa11.35□□□□□ -0.59
VPS39-203ENST00000561797 DEDDO75618 318 aa11.35□□□□□ -0.59
VPS39-203ENST00000561797 CST7O76096 145 aa11.35□□□□□ -0.59
VPS39-203ENST00000561797 PLP1P60201 277 aa11.35□□□□□ -0.59
VPS39-203ENST00000561797 IFITM3Q01628 133 aa11.35□□□□□ -0.59
VPS39-203ENST00000561797 IGFL4Q6B9Z1 124 aa11.35□□□□□ -0.59
VPS39-203ENST00000561797 EBLN2Q6P2I7 272 aa11.35□□□□□ -0.59
VPS39-203ENST00000561797 C17orf77Q96MU5 243 aa11.35□□□□□ -0.59
VPS39-203ENST00000561797 GPR82Q96P67 336 aa11.35□□□□□ -0.59
VPS39-203ENST00000561797 MFFQ9GZY8 342 aa11.35□□□□□ -0.59
VPS39-203ENST00000561797 RPRMQ9NS64 109 aa11.35□□□□□ -0.59
VPS39-203ENST00000561797 AGPAT2O15120 278 aa11.34□□□□□ -0.59
VPS39-203ENST00000561797 LY6G6CO95867 125 aa11.34□□□□□ -0.59
VPS39-203ENST00000561797 PVALBP20472 110 aaPredicted RBP11.34□□□□□ -0.59
VPS39-203ENST00000561797 RAB32Q13637 225 aa11.34□□□□□ -0.59
VPS39-203ENST00000561797 SAMD13Q5VXD3 122 aa11.34□□□□□ -0.59
VPS39-203ENST00000561797 PATE2Q6UY27 113 aa11.34□□□□□ -0.59
VPS39-203ENST00000561797 GGACTQ9BVM4 153 aa11.34□□□□□ -0.59
VPS39-203ENST00000561797 C11orf1Q9H5F2 150 aa11.34□□□□□ -0.59
VPS39-203ENST00000561797 GPN1Q9HCN4 374 aaPredicted RBP11.34□□□□□ -0.59
VPS39-203ENST00000561797 ELOA3CA0A087WX78 387 aaPredicted RBP11.33□□□□□ -0.6
VPS39-203ENST00000561797 FAM78BQ5VT40 261 aa11.33□□□□□ -0.6
VPS39-203ENST00000561797 ZNF546Q86UE3 836 aa11.33□□□□□ -0.6
VPS39-203ENST00000561797 LINC00476Q8WZB0 136 aa11.33□□□□□ -0.6
VPS39-203ENST00000561797 MGST2Q99735 147 aa11.33□□□□□ -0.6
VPS39-203ENST00000561797 SLC35B3Q9H1N7 401 aa11.33□□□□□ -0.6
VPS39-203ENST00000561797 ARV1Q9H2C2 271 aa11.33□□□□□ -0.6
VPS39-203ENST00000561797 IGHV3OR16-12A0A075B7B8 117 aa11.32□□□□□ -0.6
VPS39-203ENST00000561797 A0A0J9YX75 114 aa11.32□□□□□ -0.6
VPS39-203ENST00000561797 SIX6O95475 246 aa11.32□□□□□ -0.6
VPS39-203ENST00000561797 RPL7P18124 248 aaKnown RBP11.32□□□□□ -0.6
VPS39-203ENST00000561797 PSG9Q00887 426 aa11.32□□□□□ -0.6
VPS39-203ENST00000561797 IL15RAQ13261 267 aa11.32□□□□□ -0.6
VPS39-203ENST00000561797 SPATA31B1PQ5VZV4 182 aa11.32□□□□□ -0.6
VPS39-203ENST00000561797 NRARPQ7Z6K4 114 aa11.32□□□□□ -0.6
VPS39-203ENST00000561797 S100A7AQ86SG5 101 aa11.32□□□□□ -0.6
VPS39-203ENST00000561797 RNF182Q8N6D2 247 aa11.32□□□□□ -0.6
VPS39-203ENST00000561797 LYSTQ99698 3801 aa11.31□□□□□ -0.6
VPS39-203ENST00000561797 TRAV8-2A0A0B4J237 113 aa11.31□□□□□ -0.6
VPS39-203ENST00000561797 IGSF23A1L1A6 192 aa11.31□□□□□ -0.6
VPS39-203ENST00000561797 PXDC1Q5TGL8 231 aa11.31□□□□□ -0.6
VPS39-203ENST00000561797 ZNF709Q8N972 641 aa11.31□□□□□ -0.6
VPS39-203ENST00000561797 CLUHP3Q96NS8 147 aa11.31□□□□□ -0.6
VPS39-203ENST00000561797 INMT-MINDY4F8WBC2 141 aa11.3□□□□□ -0.6
VPS39-203ENST00000561797 COX7A2P2O60397 106 aa11.3□□□□□ -0.6
VPS39-203ENST00000561797 ZNF705DP0CH99 300 aaPredicted RBP11.3□□□□□ -0.6
VPS39-203ENST00000561797 ZNF705BP0CI00 300 aaPredicted RBP11.3□□□□□ -0.6
VPS39-203ENST00000561797 HLA-DMBP28068 263 aa11.3□□□□□ -0.6
VPS39-203ENST00000561797 CAMLGP49069 296 aa11.3□□□□□ -0.6
VPS39-203ENST00000561797 SULT1A1P50225 295 aa11.3□□□□□ -0.6
VPS39-203ENST00000561797 RAB31Q13636 194 aa11.3□□□□□ -0.6
VPS39-203ENST00000561797 LINC00305Q7Z4B0 112 aa11.3□□□□□ -0.6
VPS39-203ENST00000561797 TMEM252Q8N6L7 170 aa11.3□□□□□ -0.6
VPS39-203ENST00000561797 LRRC20Q8TCA0 184 aa11.3□□□□□ -0.6
VPS39-203ENST00000561797 LYRM2Q9NU23 88 aaPredicted RBP11.3□□□□□ -0.6
VPS39-203ENST00000561797 UQCC1Q9NVA1 299 aa11.3□□□□□ -0.6
VPS39-203ENST00000561797 RYR2Q92736 4967 aa11.29□□□□□ -0.6
VPS39-203ENST00000561797 UBE2L5PA0A1B0GUS4 154 aa11.29□□□□□ -0.6
VPS39-203ENST00000561797 SNRPCP09234 159 aaKnown RBP11.29□□□□□ -0.6
VPS39-203ENST00000561797 C10orf113Q5VZT2 155 aa11.29□□□□□ -0.6
VPS39-203ENST00000561797 MIC13Q5XKP0 118 aa11.29□□□□□ -0.6
VPS39-203ENST00000561797 ZNF705AQ6ZN79 300 aaPredicted RBP11.29□□□□□ -0.6
VPS39-203ENST00000561797 ZNF767PQ75MW2 155 aa11.29□□□□□ -0.6
VPS39-203ENST00000561797 STX12Q86Y82 276 aa11.29□□□□□ -0.6
VPS39-203ENST00000561797 ZNF738Q8NE65 137 aa11.29□□□□□ -0.6
VPS39-203ENST00000561797 TMEM37Q8WXS4 190 aa11.29□□□□□ -0.6
VPS39-203ENST00000561797 HRH4Q9H3N8 390 aa11.29□□□□□ -0.6
VPS39-203ENST00000561797 BATF3Q9NR55 127 aa11.29□□□□□ -0.6
VPS39-203ENST00000561797 CELA1Q9UNI1 258 aa11.29□□□□□ -0.6
VPS39-203ENST00000561797 WDR83OSQ9Y284 106 aa11.29□□□□□ -0.6
VPS39-203ENST00000561797 A0A087X0K7 114 aa11.28□□□□□ -0.6
VPS39-203ENST00000561797 PRAF2O60831 178 aa11.28□□□□□ -0.6
VPS39-203ENST00000561797 PRB4P10163 310 aaPredicted RBP11.28□□□□□ -0.6
VPS39-203ENST00000561797 S100A11P31949 105 aa11.28□□□□□ -0.6
VPS39-203ENST00000561797 HBG1P69891 147 aa11.28□□□□□ -0.6
VPS39-203ENST00000561797 HBG2P69892 147 aa11.28□□□□□ -0.6
VPS39-203ENST00000561797 BAXQ07812 192 aa11.28□□□□□ -0.6
VPS39-203ENST00000561797 MORN5Q5VZ52 161 aa11.28□□□□□ -0.6
VPS39-203ENST00000561797 C2CD4CQ8TF44 421 aa11.28□□□□□ -0.6
VPS39-203ENST00000561797 RNF24Q9Y225 148 aa11.28□□□□□ -0.6
VPS39-203ENST00000561797 ZNF705FA8MVS1 300 aaPredicted RBP11.27□□□□□ -0.61
VPS39-203ENST00000561797 IGLL5B9A064 214 aa11.27□□□□□ -0.61
VPS39-203ENST00000561797 MRPS12O15235 138 aaKnown RBP11.27□□□□□ -0.61
VPS39-203ENST00000561797 DUSP14O95147 198 aaKnown RBP11.27□□□□□ -0.61
VPS39-203ENST00000561797 CNN1P51911 297 aaKnown RBP11.27□□□□□ -0.61
VPS39-203ENST00000561797 EMP1P54849 157 aa11.27□□□□□ -0.61
VPS39-203ENST00000561797 DEFA1P59665 94 aa11.27□□□□□ -0.61
VPS39-203ENST00000561797 DEFA3P59666 94 aa11.27□□□□□ -0.61
VPS39-203ENST00000561797 VWC2Q2TAL6 325 aa11.27□□□□□ -0.61
VPS39-203ENST00000561797 LRRC37A5PQ49AS3 106 aa11.27□□□□□ -0.61
VPS39-203ENST00000561797 AMTNQ6UX39 209 aa11.27□□□□□ -0.61
VPS39-203ENST00000561797 Q6ZRG5 221 aa11.27□□□□□ -0.61
VPS39-203ENST00000561797 Q6ZTC4 211 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms