RNA–Protein interactions for RNA: ENST00000560628.1

LDLR-214, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 535 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-214ENST00000560628 GOLT1BQ9Y3E0 138 aa7.31□□□□□ -1.24
LDLR-214ENST00000560628 RFNGQ9Y644 331 aa7.31□□□□□ -1.24
LDLR-214ENST00000560628 TRAV8-2A0A0B4J237 113 aa7.3□□□□□ -1.24
LDLR-214ENST00000560628 TMEM189A5PLL7 270 aa7.3□□□□□ -1.24
LDLR-214ENST00000560628 CENPXA8MT69 81 aa7.3□□□□□ -1.24
LDLR-214ENST00000560628 HYPMO75409 117 aa7.3□□□□□ -1.24
LDLR-214ENST00000560628 PRM2P04554 102 aa7.3□□□□□ -1.24
LDLR-214ENST00000560628 OR5G3P0C626 314 aa7.3□□□□□ -1.24
LDLR-214ENST00000560628 PRB4P10163 310 aaPredicted RBP7.3□□□□□ -1.24
LDLR-214ENST00000560628 HTN3P15516 51 aa7.3□□□□□ -1.24
LDLR-214ENST00000560628 BTCP35070 178 aa7.3□□□□□ -1.24
LDLR-214ENST00000560628 RAP2BP61225 183 aa7.3□□□□□ -1.24
LDLR-214ENST00000560628 IAH1Q2TAA2 248 aaPredicted RBP7.3□□□□□ -1.24
LDLR-214ENST00000560628 FAM222AQ5U5X8 452 aa7.3□□□□□ -1.24
LDLR-214ENST00000560628 SAMD13Q5VXD3 122 aa7.3□□□□□ -1.24
LDLR-214ENST00000560628 NDUFAF3Q9BU61 184 aa7.3□□□□□ -1.24
LDLR-214ENST00000560628 SLC25A39Q9BZJ4 359 aaPredicted RBP7.3□□□□□ -1.24
LDLR-214ENST00000560628 DKK2Q9UBU2 259 aa7.3□□□□□ -1.24
LDLR-214ENST00000560628 HIGD1AQ9Y241 93 aa7.3□□□□□ -1.24
LDLR-214ENST00000560628 LOC102723971A0A1B0GUV8 181 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 H3BRN7 92 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 HBE1P02100 147 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 AMBPP02760 352 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 LINC00869P0C866 280 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 IL7P13232 177 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 S100A7P31151 101 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 CNN1P51911 297 aaKnown RBP7.29□□□□□ -1.24
LDLR-214ENST00000560628 RRN3P1Q2M238 152 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 AMTNQ6UX39 209 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 TMEM14EPQ6UXP3 125 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 ZBTB8BQ8NAP8 495 aaPredicted RBP7.29□□□□□ -1.24
LDLR-214ENST00000560628 ZNF738Q8NE65 137 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 OR10P1Q8NGE3 313 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 GPR82Q96P67 336 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 UHRF2Q96PU4 802 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 NIPSNAP3BQ9BS92 247 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 SHANK2-AS3Q9BTD1 123 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 TMEM208Q9BTX3 173 aa7.29□□□□□ -1.24
LDLR-214ENST00000560628 YTHDF2Q9Y5A9 579 aaKnown RBP7.29□□□□□ -1.24
LDLR-214ENST00000560628 ZNF705GA8MUZ8 300 aaPredicted RBP7.28□□□□□ -1.24
LDLR-214ENST00000560628 M0R2N4 97 aa7.28□□□□□ -1.24
LDLR-214ENST00000560628 M0R2Z0 102 aa7.28□□□□□ -1.24
LDLR-214ENST00000560628 PLA2G10O15496 165 aa7.28□□□□□ -1.24
LDLR-214ENST00000560628 DUSP14O95147 198 aaKnown RBP7.28□□□□□ -1.24
LDLR-214ENST00000560628 SNRPCP09234 159 aaKnown RBP7.28□□□□□ -1.24
LDLR-214ENST00000560628 DLK1P80370 383 aa7.28□□□□□ -1.24
LDLR-214ENST00000560628 SLC38A11Q08AI6 406 aa7.28□□□□□ -1.24
LDLR-214ENST00000560628 ARL16Q0P5N6 197 aa7.28□□□□□ -1.24
LDLR-214ENST00000560628 SPINK13Q1W4C9 94 aa7.28□□□□□ -1.24
LDLR-214ENST00000560628 PATE2Q6UY27 113 aa7.28□□□□□ -1.24
LDLR-214ENST00000560628 POM121L12Q8N7R1 296 aa7.28□□□□□ -1.24
LDLR-214ENST00000560628 OR11H7Q8NGC8 314 aa7.28□□□□□ -1.24
LDLR-214ENST00000560628 IGF2BP2-AS1Q96M15 143 aa7.28□□□□□ -1.24
LDLR-214ENST00000560628 ARL6Q9H0F7 186 aa7.28□□□□□ -1.24
LDLR-214ENST00000560628 NPVFQ9HCQ7 196 aa7.28□□□□□ -1.24
LDLR-214ENST00000560628 MGAT4CQ9UBM8 478 aa7.28□□□□□ -1.24
LDLR-214ENST00000560628 FRAS1Q86XX4 4008 aa7.27□□□□□ -1.25
LDLR-214ENST00000560628 A8MTW9 85 aa7.27□□□□□ -1.25
LDLR-214ENST00000560628 CCSO14618 274 aa7.27□□□□□ -1.25
LDLR-214ENST00000560628 MBPP02686 304 aaPredicted RBP7.27□□□□□ -1.25
LDLR-214ENST00000560628 P0DMU3 169 aa7.27□□□□□ -1.25
LDLR-214ENST00000560628 FAM231AP0DMU4 169 aa7.27□□□□□ -1.25
LDLR-214ENST00000560628 FAM231CP0DMU5 169 aa7.27□□□□□ -1.25
LDLR-214ENST00000560628 RPL7P18124 248 aaKnown RBP7.27□□□□□ -1.25
LDLR-214ENST00000560628 PLP1P60201 277 aa7.27□□□□□ -1.25
LDLR-214ENST00000560628 SELENOTP62341 195 aa7.27□□□□□ -1.25
LDLR-214ENST00000560628 RHOBP62745 196 aa7.27□□□□□ -1.25
LDLR-214ENST00000560628 LRRC20Q8TCA0 184 aa7.27□□□□□ -1.25
LDLR-214ENST00000560628 MITD1Q8WV92 249 aa7.27□□□□□ -1.25
LDLR-214ENST00000560628 RCL1Q9Y2P8 373 aaKnown RBP7.27□□□□□ -1.25
LDLR-214ENST00000560628 VPS13DQ5THJ4 4388 aa7.26□□□□□ -1.25
LDLR-214ENST00000560628 TRAV12-2A0A075B6T6 113 aa7.26□□□□□ -1.25
LDLR-214ENST00000560628 TRAV6A0A075B6T7 132 aa7.26□□□□□ -1.25
LDLR-214ENST00000560628 C7orf66A4D0T2 115 aa7.26□□□□□ -1.25
LDLR-214ENST00000560628 FAM25EA8MYX2 175 aa7.26□□□□□ -1.25
LDLR-214ENST00000560628 GOSR2O14653 212 aa7.26□□□□□ -1.25
LDLR-214ENST00000560628 CRXO43186 299 aaPredicted RBP7.26□□□□□ -1.25
LDLR-214ENST00000560628 TSC22D2O75157 780 aa7.26□□□□□ -1.25
LDLR-214ENST00000560628 TAS2R30P59541 319 aa7.26□□□□□ -1.25
LDLR-214ENST00000560628 DAD1P61803 113 aa7.26□□□□□ -1.25
LDLR-214ENST00000560628 HIST1H1AQ02539 215 aaPredicted RBP7.26□□□□□ -1.25
LDLR-214ENST00000560628 PSG3Q16557 428 aa7.26□□□□□ -1.25
LDLR-214ENST00000560628 TEPPQ6URK8 271 aa7.26□□□□□ -1.25
LDLR-214ENST00000560628 BAP18Q8IXM2 172 aa7.26□□□□□ -1.25
LDLR-214ENST00000560628 C20orf85Q9H1P6 137 aa7.26□□□□□ -1.25
LDLR-214ENST00000560628 ARV1Q9H2C2 271 aa7.26□□□□□ -1.25
LDLR-214ENST00000560628 PPP1R14DQ9NXH3 145 aa7.26□□□□□ -1.25
LDLR-214ENST00000560628 IGLV2-18A0A075B6J9 118 aa7.25□□□□□ -1.25
LDLR-214ENST00000560628 TEX48A0A1B0GUV7 120 aa7.25□□□□□ -1.25
LDLR-214ENST00000560628 FNDC10F2Z333 226 aa7.25□□□□□ -1.25
LDLR-214ENST00000560628 L7N2F9 121 aa7.25□□□□□ -1.25
LDLR-214ENST00000560628 AGPAT2O15120 278 aa7.25□□□□□ -1.25
LDLR-214ENST00000560628 LYRM1O43325 122 aa7.25□□□□□ -1.25
LDLR-214ENST00000560628 INSP01308 110 aa7.25□□□□□ -1.25
LDLR-214ENST00000560628 TCRBP04435 133 aa7.25□□□□□ -1.25
LDLR-214ENST00000560628 CXCL3P19876 107 aa7.25□□□□□ -1.25
LDLR-214ENST00000560628 AZU1P20160 251 aa7.25□□□□□ -1.25
LDLR-214ENST00000560628 BCAP31P51572 246 aa7.25□□□□□ -1.25
LDLR-214ENST00000560628 VAMP2P63027 116 aa7.25□□□□□ -1.25
LDLR-214ENST00000560628 ZNF846Q147U1 533 aa7.25□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms